Genome sequence data availability
for species in the
Japanese Red List
(version 2020 from Ministry of the Environment, Japan)

Updated on 2024-05-02

This page shows the availability of genome data for all species listed in the Japanese Red List, 2020 edition. We used data from: Japanese Red List, NCBI Taxonomy, and NCBI Datasets (details). This page is placed in the public domain.

A few photos of the rare species can be seen in the gallery.

Contributors: Kirill Kryukov, Shigehiro Kuraku, and Naoyuki Nakahama.

Show the list by taxonomic group: Mammals | Birds | Reptiles | Amphibians | Brackish and freshwater fishes | Insects | Molluscs | Other invertebrates | Vascular plants | Algae | Bryophytes | Lichen | Fungi | All
Show the list by taxonomic group: 哺乳類鳥類爬虫類両生類汽水・淡水魚類昆虫類貝類その他無脊椎動物維管束植物藻類蘚苔類地衣類菌類総計

Show the list by conservation status: EX | EW | CR | EN | CR+EN | VU | NT | DD | LP | All
Show the list by conservation status: 絶滅野生絶滅絶滅危惧IA類絶滅危惧IB類絶滅危惧I類絶滅危惧II類準絶滅危惧情報不足絶滅のおそれのある地域個体群総計


Statistics

Summary by conservation status (tsv)

Conservation StatusNumber
of entries
How many
are registered in
any taxonomy
(NCBI/GBIF/iNat)
How many have
sequenced genomes
EX
絶滅
11094 (85.5%)
0 (0.0%)
EW
野生絶滅
1413 (92.9%)
0 (0.0%)
CR
絶滅危惧IA類
762702 (92.1%)
27 (3.5%)
EN
絶滅危惧IB類
785745 (94.9%)
19 (2.4%)
CR+EN
絶滅危惧I類
563480 (85.3%)
10 (1.8%)
VU
絶滅危惧II類
1,6061,482 (92.3%)
37 (2.3%)
NT
準絶滅危惧
1,3641,246 (91.3%)
23 (1.7%)
DD
情報不足
544480 (88.2%)
11 (2.0%)
LP
絶滅のおそれのある地域個体群
4944 (89.8%)
7 (14.3%)
Total
総計
5,7975,286 (91.2%)
134 (2.3%)

Summary by taxonomic group (tsv)

GroupNumber
of entries
How many
are registered in
any taxonomy
(NCBI/GBIF/iNat)
How many have
sequenced genomes
Mammals
哺乳類
7568 (90.7%)
16 (21.3%)
Birds
鳥類
154148 (96.1%)
30 (19.5%)
Reptiles
爬虫類
6261 (98.4%)
6 (9.7%)
Amphibians
両生類
6767 (100.0%)
0 (0.0%)
Brackish and freshwater fishes
汽水・淡水魚類
260238 (91.5%)
21 (8.1%)
Insects
昆虫類
877779 (88.8%)
5 (0.6%)
Molluscs
貝類
1,190971 (81.6%)
8 (0.7%)
Other invertebrates
その他無脊椎動物
152143 (94.1%)
5 (3.3%)
Vascular plants
維管束植物
2,1632,087 (96.5%)
23 (1.1%)
Algae
藻類
202153 (75.7%)
3 (1.5%)
Bryophytes
蘚苔類
282281 (99.6%)
1 (0.4%)
Lichen
地衣類
154141 (91.6%)
3 (1.9%)
Fungi
菌類
159149 (93.7%)
13 (8.2%)
Total
総計
5,7975,286 (91.2%)
134 (2.3%)

Comparison of taxonomies (tsv)

GroupNumber
of entries
How many
are registered in
NCBI taxonomy
How many
are registered in
GBIF taxonomy
How many
are registered in
iNat taxonomy
How many
are registered in
any taxonomy
(NCBI/GBIF/iNat)
Mammals
哺乳類
7550 (66.7%)
66 (88.0%)
65 (86.7%)
68 (90.7%)
Birds
鳥類
154125 (81.2%)
144 (93.5%)
137 (89.0%)
148 (96.1%)
Reptiles
爬虫類
6244 (71.0%)
60 (96.8%)
58 (93.5%)
61 (98.4%)
Amphibians
両生類
6765 (97.0%)
65 (97.0%)
65 (97.0%)
67 (100.0%)
Brackish and freshwater fishes
汽水・淡水魚類
260216 (83.1%)
225 (86.5%)
200 (76.9%)
238 (91.5%)
Insects
昆虫類
877343 (39.1%)
702 (80.0%)
511 (58.3%)
779 (88.8%)
Molluscs
貝類
1,190491 (41.3%)
960 (80.7%)
498 (41.8%)
971 (81.6%)
Other invertebrates
その他無脊椎動物
15289 (58.6%)
139 (91.4%)
81 (53.3%)
143 (94.1%)
Vascular plants
維管束植物
2,1631,443 (66.7%)
2,060 (95.2%)
1,326 (61.3%)
2,087 (96.5%)
Algae
藻類
202126 (62.4%)
128 (63.4%)
69 (34.2%)
153 (75.7%)
Bryophytes
蘚苔類
282198 (70.2%)
280 (99.3%)
137 (48.6%)
281 (99.6%)
Lichen
地衣類
15476 (49.4%)
140 (90.9%)
75 (48.7%)
141 (91.6%)
Fungi
菌類
15977 (48.4%)
147 (92.5%)
59 (37.1%)
149 (93.7%)
Total
総計
5,7973,343 (57.7%)
5,116 (88.3%)
3,281 (56.6%)
5,286 (91.2%)

NCBI taxonomy coverage (tsv)

GroupNumber
of entries
How many
have complete name
registered in
NCBI taxonomy
How many
have species
registered in
NCBI taxonomy
How many
have genus
registered in
NCBI taxonomy
Mammals
哺乳類
7550 (66.7%)
69 (92.0%)
75 (100.0%)
Birds
鳥類
154125 (81.2%)
152 (98.7%)
153 (99.4%)
Reptiles
爬虫類
6244 (71.0%)
56 (90.3%)
62 (100.0%)
Amphibians
両生類
6765 (97.0%)
65 (97.0%)
67 (100.0%)
Brackish and freshwater fishes
汽水・淡水魚類
260216 (83.1%)
223 (85.8%)
258 (99.2%)
Insects
昆虫類
877343 (39.1%)
423 (48.2%)
778 (88.7%)
Molluscs
貝類
1,190491 (41.3%)
545 (45.8%)
1,016 (85.4%)
Other invertebrates
その他無脊椎動物
15289 (58.6%)
89 (58.6%)
134 (88.2%)
Vascular plants
維管束植物
2,1631,443 (66.7%)
1,742 (80.5%)
2,153 (99.5%)
Algae
藻類
202126 (62.4%)
154 (76.2%)
201 (99.5%)
Bryophytes
蘚苔類
282198 (70.2%)
206 (73.0%)
280 (99.3%)
Lichen
地衣類
15476 (49.4%)
78 (50.6%)
150 (97.4%)
Fungi
菌類
15977 (48.4%)
80 (50.3%)
147 (92.5%)
Total
総計
5,7973,343 (57.7%)
3,882 (67.0%)
5,474 (94.4%)

Changes of sequenced genome availability over time

20 most recent genomes

Conservation
Status
Taxonomic
Group
OrganismAccessionDateSubmitter
NT
準絶滅危惧
Molluscs
貝類
Corbicula japonica
ヤマトシジミ
GCA_038501625.12024-04-26ChungAng University
VU
絶滅危惧II類
Birds
鳥類
Anas formosa
トモエガモ
GCA_038406215.12024-04-22Iridian Genomes
VU
絶滅危惧II類
Other invertebrates
その他無脊椎動物
Ryuthela nishihirai sensu lato
オキナワキムラグモ(広義)
GCA_038380435.12024-04-17Trier University
LP
絶滅のおそれの
ある地域個体群
Mammals
哺乳類
Cervus nippon
馬毛島のニホンジカ
GCA_038088365.12024-04-12northwestern polytechnology university
DD
情報不足
Fungi
菌類
Boletus edulis Bull.
ヤマドリタケ
GCA_038093215.12024-04-12University of Utah
DD
情報不足
Fungi
菌類
Boletus edulis Bull.
ヤマドリタケ
GCA_038089135.12024-04-12University of Utah
CR
絶滅危惧IA類
Mammals
哺乳類
Apodemus agrarius
セスジネズミ
GCA_964023405.12024-04-12Centro Nacional de Análisis Genómico
EN
絶滅危惧IB類
Birds
鳥類
Platalea minor
クロツラヘラサギ
GCA_037975005.12024-04-05The Chinese University of Hong Kong
EN
絶滅危惧IB類
Brackish and freshwater fishes
汽水・淡水魚類
Anguilla japonica
ニホンウナギ
GCA_037790555.12024-03-29University of Chinese Academy of Sciences
EN
絶滅危惧IB類
Vascular plants
維管束植物
Vitis amurensis
シラガブドウ
GCA_037355405.12024-03-20Shandong Academy of Agricultural Sciences
VU
絶滅危惧II類
Vascular plants
維管束植物
Ottelia alismoides
ミズオオバコ
GCA_037367405.12024-03-19South China Botanical Garden, Chinese Academy of Sciences
CR
絶滅危惧IA類
Brackish and freshwater fishes
汽水・淡水魚類
Yarica hyalosoma
カガミテンジクダイ
GCA_037367295.12024-03-19Iridian Genomes
NT
準絶滅危惧
Mammals
哺乳類
Eumetopias jubatus
トド
GCA_037043125.12024-03-07Canada's Genomic Enterprise
NT
準絶滅危惧
Mammals
哺乳類
Eumetopias jubatus
トド
GCA_037043055.12024-03-06Canada's Genomic Enterprise
VU
絶滅危惧II類
Mammals
哺乳類
Nyctalus aviator
ヤマコウモリ
GCA_036971965.12024-03-06Northeast Normal University
NT
準絶滅危惧
Brackish and freshwater fishes
汽水・淡水魚類
Oncorhynchus masou masou
サクラマス(ヤマメ)
GCA_036934945.22024-03-01University of Victoria
CR
絶滅危惧IA類
Brackish and freshwater fishes
汽水・淡水魚類
Rhyacichthys aspro
ツバサハゼ
GCA_036850595.12024-02-26Academia Sinica, Taiwan
NT
準絶滅危惧
Vascular plants
維管束植物
Cornus suecica
エゾゴゼンタチバナ
GCA_963922005.12024-02-09WELLCOME SANGER INSTITUTE
DD
情報不足
Mammals
哺乳類
Vespertilio murinus
ヒメヒナコウモリ
GCA_963924695.12024-01-30WELLCOME SANGER INSTITUTE
DD
情報不足
Mammals
哺乳類
Vespertilio murinus
ヒメヒナコウモリ
GCA_963924515.12024-01-29WELLCOME SANGER INSTITUTE

Submitters of sequenced genomes

Links