Genome sequence data availability
for the Japanese Red Lists
Updated on 2024-10-01
This page shows all entries from the list. This table is also available in TSV format.
This page shows all entries from the list. This table is also available in TSV format.
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Pteropus loochoensis オキナワオオコウモリ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | — |
| EX 絶滅 | Rhinolophus pumilus miyakonis ミヤココキクガシラコウモリ | — | — | — | — | — | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| EX 絶滅 | Pipistrellus sturdeei オガサワラアブラコウモリ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 48 | 4/77 (5.2%) | 29/892 (3.3%) | — |
| EX 絶滅 | Canis lupus hattai エゾオオカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 30 | 31 | 52 | 2/29 (6.9%) | 12/65 (18.5%) | — |
| EX 絶滅 | Canis lupus hodophilax ニホンオオカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 30 | 31 | 52 | 2/29 (6.9%) | 12/65 (18.5%) | — |
| EX 絶滅 | Lutra lutra nippon ニホンカワウソ（本州以南亜種） | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 64 | 1/4 (25.0%) | 20/70 (28.6%) | — |
| EX 絶滅 | Lutra lutra whiteleyi ニホンカワウソ（北海道亜種） | — | — | — | ✓ | ✓ | No | — | — | — | 2 | 2 | 64 | 1/4 (25.0%) | 20/70 (28.6%) | — |
| CR 絶滅危惧IA類 | Mogera uchidai センカクモグラ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/10 (0.0%) | 6/106 (5.7%) | — |
| CR 絶滅危惧IA類 | Pteropus dasymallus daitoensis ダイトウオオコウモリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | — |
| CR 絶滅危惧IA類 | Pteropus dasymallus dasymallus エラブオオコウモリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | — |
| CR 絶滅危惧IA類 | Myotis formosus クロアカコウモリ | NT | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| CR 絶滅危惧IA類 | Myotis yanbarensis ヤンバルホオヒゲコウモリ | CR | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| CR 絶滅危惧IA類 | Apodemus agrarius セスジネズミ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.61 Gbp 70.0x | 242 35.2 Mbp | 1 | 5 | 138 | 3/36 (8.3%) | 37/1165 (3.2%) | 2024-04-12 |
| CR 絶滅危惧IA類 | Tokudaia muenninki オキナワトゲネズミ | CR | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 2.66 Gbp 100.0x | 1,777 19.7 Mbp | 2 | 5 | 138 | 3/3 (100.0%) | 37/1165 (3.2%) | 2023-09-08 |
| CR 絶滅危惧IA類 | Prionailurus bengalensis euptilurus ツシマヤマネコ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 2.42 Gbp 100.0x | 319,281 20.4 kbp | 3 | 7 | 57 | 3/5 (60.0%) | 22/54 (40.7%) | 2020-09-15 |
| CR 絶滅危惧IA類 | Prionailurus bengalensis iriomotensis イリオモテヤマネコ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.38 Gbp 87.0x | 194,533 27.8 kbp | 1 | 7 | 57 | 3/5 (60.0%) | 22/54 (40.7%) | 2021-03-31 |
| CR 絶滅危惧IA類 | Enhydra lutris ラッコ | EN | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 2.46 Gbp 110.0x | 29,591 245 kbp | 2 | 2 | 64 | 1/1 (100.0%) | 20/70 (28.6%) | 2017-09-11 |
| CR 絶滅危惧IA類 | Zalophus japonicus ニホンアシカ | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 13 | 1/3 (33.3%) | 5/16 (31.2%) | — |
| CR 絶滅危惧IA類 | Dugong dugon ジュゴン | VU | ✓ | ✓ | ✓ | ✓ | Yes (5) | Chromosome, Reference | 3.16 Gbp 32.0x | 294 57.6 Mbp | 5 | 5 | 6 | 1/1 (100.0%) | 2/2 (100.0%) | 2020-08-31 |
| EN 絶滅危惧IB類 | Crocidura orii オリイジネズミ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/306 (0.3%) | 8/532 (1.5%) | — |
| EN 絶滅危惧IB類 | Mogera etigo エチゴモグラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/10 (0.0%) | 6/106 (5.7%) | — |
| EN 絶滅危惧IB類 | Pteropus pselaphon オガサワラオオコウモリ | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.93 Gbp 119.0x | 16,738 395 kbp | 1 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | 2020-08-23 |
| EN 絶滅危惧IB類 | Rhinolophus cornutus orii オリイコキクガシラコウモリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| EN 絶滅危惧IB類 | Rhinolophus pumilus pumilus オキナワコキクガシラコウモリ | — | — | — | — | — | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| EN 絶滅危惧IB類 | Murina ryukyuana リュウキュウテングコウモリ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 48 | 1/69 (1.4%) | 29/892 (3.3%) | — |
| EN 絶滅危惧IB類 | Nyctalus furvus コヤマコウモリ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 48 | 2/8 (25.0%) | 29/892 (3.3%) | — |
| EN 絶滅危惧IB類 | Miniopterus fuscus リュウキュウユビナガコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 4 | 2/73 (2.7%) | 2/73 (2.7%) | — |
| EN 絶滅危惧IB類 | Diplothrix legata ケナガネズミ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 138 | 0/1 (0.0%) | 37/1165 (3.2%) | — |
| EN 絶滅危惧IB類 | Tokudaia osimensis アマミトゲネズミ | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.44 Gbp 170.0x | 111,287 52.4 kbp | 1 | 5 | 138 | 3/3 (100.0%) | 37/1165 (3.2%) | 2022-11-01 |
| EN 絶滅危惧IB類 | Tokudaia tokunoshimensis トクノシマトゲネズミ | EN | ✓ | ✓ | ✓ | — | Yes (2) | Scaffold, Reference | 2.48 Gbp 135.0x | 569 13.6 Mbp | 2 | 5 | 138 | 3/3 (100.0%) | 37/1165 (3.2%) | 2023-09-08 |
| EN 絶滅危惧IB類 | Pentalagus furnessi アマミノクロウサギ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/1 (0.0%) | 9/135 (6.7%) | — |
| EN 絶滅危惧IB類 | Mustela sibirica シベリアイタチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 35 | 64 | 6/20 (30.0%) | 20/70 (28.6%) | — |
| VU 絶滅危惧II類 | Sorex minutissimus hawkeri トウキョウトガリネズミ | — | — | — | — | — | No | — | — | — | 0 | 9 | 13 | 5/70 (7.1%) | 8/532 (1.5%) | — |
| VU 絶滅危惧II類 | Rhinolophus perditus ヤエヤマコキクガシラコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| VU 絶滅危惧II類 | Eptesicus japonensis クビワコウモリ | VU | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 5 | 48 | 2/43 (4.7%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Myotis gracilis ウスリホオヒゲコウモリ | — | ✓ | — | — | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Myotis nattereri bombinus ホンドノレンコウモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Myotis pruinosus クロホオヒゲコウモリ | EN | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Nyctalus aviator ヤマコウモリ | NT | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 1.78 Gbp 380.0x | 337 61.2 Mbp | 1 | 3 | 48 | 2/8 (25.0%) | 29/892 (3.3%) | 2024-05-31 |
| VU 絶滅危惧II類 | Pipistrellus endoi モリアブラコウモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 48 | 4/77 (5.2%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Tadarida insignis オヒキコウモリ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 10 | 1/8 (12.5%) | 4/145 (2.8%) | — |
| NT 準絶滅危惧 | Crocidura shantungensis コジネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/306 (0.3%) | 8/532 (1.5%) | — |
| NT 準絶滅危惧 | Crocidura watasei ワタセジネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/306 (0.3%) | 8/532 (1.5%) | — |
| NT 準絶滅危惧 | Sorex hosonoi アズミトガリネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 13 | 5/70 (7.1%) | 8/532 (1.5%) | — |
| NT 準絶滅危惧 | Sorex shinto shikokensis シコクトガリネズミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 13 | 5/70 (7.1%) | 8/532 (1.5%) | — |
| NT 準絶滅危惧 | Euroscaptor mizura ミズラモグラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 6/106 (5.7%) | — |
| NT 準絶滅危惧 | Mogera tokudae サドモグラ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/10 (0.0%) | 6/106 (5.7%) | — |
| NT 準絶滅危惧 | Myodes rex montanus ミヤマムクゲネズミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 76 | 0/2 (0.0%) | 38/1112 (3.4%) | — |
| NT 準絶滅危惧 | Myodes rex rex リシリムクゲネズミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 76 | 0/2 (0.0%) | 38/1112 (3.4%) | — |
| NT 準絶滅危惧 | Ochotona hyperborea yesoensis エゾナキウサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 2/65 (3.1%) | 2/66 (3.0%) | — |
| NT 準絶滅危惧 | Lepus brachyurus lyoni サドノウサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 19 | 6/95 (6.3%) | 9/135 (6.7%) | — |
| NT 準絶滅危惧 | Martes melampus tsuensis ツシマテン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 64 | 4/9 (44.4%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Martes zibellina brachyura エゾクロテン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 8 | 64 | 4/9 (44.4%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Mustela erminea nippon ホンドオコジョ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 35 | 64 | 6/20 (30.0%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Mustela erminea orientalis エゾオコジョ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 35 | 64 | 6/20 (30.0%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Mustela nivalis namiyei ニホンイイズナ（本州亜種） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 35 | 64 | 6/20 (30.0%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Phoca vitulina ゼニガタアザラシ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.36 Gbp 45.0x | 21,601 284 kbp | 1 | 1 | 11 | 1/4 (25.0%) | 8/19 (42.1%) | 2019-02-11 |
| NT 準絶滅危惧 | Eumetopias jubatus トド | NT | ✓ | ✓ | ✓ | ✓ | Yes (3) | Scaffold, Reference | 2.42 Gbp 34.7x | 24,746 242 kbp | 3 | 3 | 13 | 1/1 (100.0%) | 5/16 (31.2%) | 2019-01-15 |
| DD 情報不足 | Hypsugo alaschanicus オオアブラコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 48 | 0/25 (0.0%) | 29/892 (3.3%) | — |
| DD 情報不足 | Murina tenebrosa クチバテングコウモリ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 48 | 1/69 (1.4%) | 29/892 (3.3%) | — |
| DD 情報不足 | Vespertilio murinus ヒメヒナコウモリ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 1.93 Gbp 44.0x | 1,157 3.32 Mbp | 2 | 2 | 48 | 1/2 (50.0%) | 29/892 (3.3%) | 2024-01-29 |
| DD 情報不足 | Tadarida latouchei スミイロオヒキコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 10 | 1/8 (12.5%) | 4/145 (2.8%) | — |
| DD 情報不足 | Tamias sibiricus lineatus エゾシマリス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 1 | 31 | 1/26 (3.8%) | 17/310 (5.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Chimarrogale platycephala 九州地方のカワネズミ | LC | ✓ | ✓ | — | ✓ | No | — | — | — | 0 | 0 | 13 | 0/6 (0.0%) | 8/532 (1.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Hipposideros turpis 波照間島のカグラコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 6 | 4/126 (3.2%) | 5/144 (3.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Barbastella leucomelas 四国のチチブコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 48 | 0/7 (0.0%) | 29/892 (3.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Myotis ikonnikovi hosonoi 紀伊半島のシナノホオヒゲコウモリ | — | — | — | — | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Plecotus sacrimontis 近畿地方以西のウサギコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 48 | 1/29 (3.4%) | 29/892 (3.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Macaca fuscata fuscata 北奥羽・北上山系のホンドザル | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Contig, Reference | 2.93 Gbp 42.0x | 90,905 94.9 kbp | 2 | 47 | 146 | 15/33 (45.5%) | 84/196 (42.9%) | 2018-04-04 |
| LP 絶滅のおそれの ある地域個体群 | Sciurus lis 九州地方のニホンリス | LC | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 31 | 3/14 (21.4%) | 17/310 (5.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ursus arctos yesoensis 石狩西部のエゾヒグマ | — | — | — | — | — | No | — | — | — | 3 | 11 | 17 | 4/13 (30.8%) | 7/20 (35.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ursus thibetanus japonicus 西中国地域のツキノワグマ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 2.21 Gbp 87.0x | 127,776 39.8 kbp | 2 | 11 | 17 | 4/13 (30.8%) | 7/20 (35.0%) | 2020-08-23 |
| LP 絶滅のおそれの ある地域個体群 | Cervus nippon 馬毛島のニホンジカ | LC | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 2.78 Gbp 37.0x | 51 89.6 Mbp | 3 | 9 | 55 | 5/7 (71.4%) | 23/171 (13.5%) | 2023-12-07 |
| LP 絶滅のおそれの ある地域個体群 | Sus scrofa riukiuanus 徳之島のリュウキュウイノシシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 39 | 40 | 43 | 2/16 (12.5%) | 4/27 (14.8%) | — |
| LP 絶滅のおそれの ある地域個体群 | Capricornis crispus 九州地方のカモシカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 250 | 1/12 (8.3%) | 73/234 (31.2%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Tadorna cristata カンムリツクシガモ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 111 | 0/6 (0.0%) | 59/199 (29.6%) | — |
| EX 絶滅 | Columba jouyi リュウキュウカラスバト | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 22 | 3/39 (7.7%) | 9/353 (2.5%) | — |
| EX 絶滅 | Columba versicolor オガサワラカラスバト | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 22 | 3/39 (7.7%) | 9/353 (2.5%) | — |
| EX 絶滅 | Nycticorax caledonicus crassirostris ハシブトゴイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/2 (50.0%) | 6/66 (9.1%) | — |
| EX 絶滅 | Porzana cinerea brevipes マミジロクイナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 18 | 0/1 (0.0%) | 12/141 (8.5%) | — |
| EX 絶滅 | Buteo buteo oshiroi ダイトウノスリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 3 | 20 | 163 | 16/29 (55.2%) | 134/274 (48.9%) | — |
| EX 絶滅 | Todiramphus miyakoensis ミヤコショウビン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 27 | 4/30 (13.3%) | 27/114 (23.7%) | — |
| EX 絶滅 | Dryocopus javensis richardsi キタタキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/6 (0.0%) | 8/222 (3.6%) | — |
| EX 絶滅 | Falco peregrinus furuitii シマハヤブサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 9 | 55 | 65 | 26/39 (66.7%) | 36/67 (53.7%) | — |
| EX 絶滅 | Poecile varius orii ダイトウヤマガラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/5 (0.0%) | 7/83 (8.4%) | — |
| EX 絶滅 | Apalopteron familiare familiare メグロ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 7/128 (5.5%) | — |
| EX 絶滅 | Troglodytes troglodytes orii ダイトウミソサザイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 7 | 0/17 (0.0%) | 7/116 (6.0%) | — |
| EX 絶滅 | Cichlopasser terrestris オガサワラガビチョウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Luscinia komadori subrufus ウスアカヒゲ | — | — | — | — | — | No | — | — | — | 0 | 0 | 24 | 0/6 (0.0%) | 23/291 (7.9%) | — |
| EX 絶滅 | Chaunoproctus ferreorostris オガサワラマシコ | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 46 | 0/1 (0.0%) | 39/288 (13.5%) | — |
| CR 絶滅危惧IA類 | Anser caerulescens caerulescens ハクガン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 111 | 4/15 (26.7%) | 59/199 (29.6%) | — |
| CR 絶滅危惧IA類 | Branta hutchinsii leucopareia シジュウカラガン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 2 | 111 | 2/9 (22.2%) | 59/199 (29.6%) | — |
| CR 絶滅危惧IA類 | Columba janthina nitens アカガシラカラスバト | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.08 Gbp 60.0x | 32,051 110 kbp | 1 | 10 | 22 | 3/39 (7.7%) | 9/353 (2.5%) | 2020-08-22 |
| CR 絶滅危惧IA類 | Puffinus bryani オガサワラヒメミズナギドリ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/33 (3.0%) | 4/114 (3.5%) | — |
| CR 絶滅危惧IA類 | Oceanodroma castro クロコシジロウミツバメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| CR 絶滅危惧IA類 | Ciconia boyciana コウノトリ | EN | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 1.24 Gbp 81.0x | 429 35.8 Mbp | 3 | 12 | 16 | 7/8 (87.5%) | 11/66 (16.7%) | 2019-05-08 |
| CR 絶滅危惧IA類 | Phalacrocorax urile チシマウガラス | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 9 | 6/21 (28.6%) | 6/43 (14.0%) | — |
| CR 絶滅危惧IA類 | Ixobrychus eurhythmus オオヨシゴイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/9 (0.0%) | 6/66 (9.1%) | — |
| CR 絶滅危惧IA類 | Nipponia nippon トキ | EN | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 1.22 Gbp 105.0x | 130,029 29.1 kbp | 2 | 2 | 8 | 1/1 (100.0%) | 6/29 (20.7%) | 2014-06-16 |
| CR 絶滅危惧IA類 | Gallirallus okinawae ヤンバルクイナ | EN | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 1.18 Gbp 100.0x | 440 20.7 Mbp | 2 | 3 | 18 | 2/10 (20.0%) | 12/141 (8.5%) | 2019-05-11 |
| CR 絶滅危惧IA類 | Eurynorhynchus pygmeus ヘラシギ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 38.0x | 44,335 189 kbp | 1 | 9 | 34 | 6/24 (25.0%) | 30/87 (34.5%) | 2018-10-30 |
| CR 絶滅危惧IA類 | Tringa guttifer カラフトアオアシシギ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 34 | 2/16 (12.5%) | 30/87 (34.5%) | — |
| CR 絶滅危惧IA類 | Fratercula cirrhata エトピリカ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.11 Gbp 85.0x | 111,227 19.7 kbp | 1 | 4 | 11 | 2/3 (66.7%) | 6/23 (26.1%) | 2020-08-22 |
| CR 絶滅危惧IA類 | Synthliboramphus antiquus ウミスズメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/4 (0.0%) | 6/23 (26.1%) | — |
| CR 絶滅危惧IA類 | Uria aalge inornata ウミガラス | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 1.04 Gbp 74.0x | 104,657 19.4 kbp | 2 | 3 | 11 | 2/2 (100.0%) | 6/23 (26.1%) | 2020-08-22 |
| CR 絶滅危惧IA類 | Spilornis cheela perplexus カンムリワシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 163 | 1/13 (7.7%) | 134/274 (48.9%) | — |
| CR 絶滅危惧IA類 | Aegolius funereus magnus キンメフクロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/4 (0.0%) | 26/183 (14.2%) | — |
| CR 絶滅危惧IA類 | Bubo bubo ワシミミズク | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.26 Gbp 104.0x | 133,317 37.1 kbp | 1 | 3 | 29 | 3/18 (16.7%) | 26/183 (14.2%) | 2020-02-04 |
| CR 絶滅危惧IA類 | Ketupa blakistoni blakistoni シマフクロウ | — | — | ✓ | — | — | No | — | — | — | 1 | 3 | 29 | 3/18 (16.7%) | 26/183 (14.2%) | — |
| CR 絶滅危惧IA類 | Picoides tridactylus inouyei ミユビゲラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/5 (0.0%) | 8/222 (3.6%) | — |
| CR 絶滅危惧IA類 | Sapheopipo noguchii ノグチゲラ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.13 Gbp 74.0x | 179,014 18.5 kbp | 1 | 1 | 12 | 1/13 (7.7%) | 8/222 (3.6%) | 2019-02-16 |
| CR 絶滅危惧IA類 | Lanius tigrinus チゴモズ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/30 (6.7%) | 2/34 (5.9%) | — |
| CR 絶滅危惧IA類 | Chloris sinica kittlitzi オガサワラカワラヒワ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 46 | 0/5 (0.0%) | 39/288 (13.5%) | — |
| CR 絶滅危惧IA類 | Emberiza aureola ornata シマアオジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 46 | 2/44 (4.5%) | 39/288 (13.5%) | — |
| EN 絶滅危惧IB類 | Lagopus muta japonica ライチョウ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 1.00 Gbp 71.0x | 72,306 56.2 kbp | 3 | 4 | 84 | 2/5 (40.0%) | 28/203 (13.8%) | 2019-02-15 |
| EN 絶滅危惧IB類 | Anser erythropus カリガネ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 111 | 4/15 (26.7%) | 59/199 (29.6%) | — |
| EN 絶滅危惧IB類 | Phaethon rubricauda rothschildi アカオネッタイチョウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/3 (33.3%) | 1/3 (33.3%) | — |
| EN 絶滅危惧IB類 | Chalcophaps indica yamashinai キンバト | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 22 | 0/3 (0.0%) | 9/353 (2.5%) | — |
| EN 絶滅危惧IB類 | Columba janthina stejnegeri ヨナグニカラスバト | — | — | — | ✓ | ✓ | No | — | — | — | 1 | 10 | 22 | 3/39 (7.7%) | 9/353 (2.5%) | — |
| EN 絶滅危惧IB類 | Streptopelia decaocto decaocto シラコバト | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 22 | 1/15 (6.7%) | 9/353 (2.5%) | — |
| EN 絶滅危惧IB類 | Phoebastria immutabilis コアホウドリ | NT | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.21 Gbp 55.0x | 24,439 107 kbp | 1 | 5 | 7 | 4/6 (66.7%) | 6/27 (22.2%) | 2024-01-11 |
| EN 絶滅危惧IB類 | Puffinus lherminieri bannermani セグロミズナギドリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/33 (3.0%) | 4/114 (3.5%) | — |
| EN 絶滅危惧IB類 | Sula sula rubripes アカアシカツオドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 4 | 10 | 4/6 (66.7%) | 8/11 (72.7%) | — |
| EN 絶滅危惧IB類 | Phalacrocorax pelagicus pelagicus ヒメウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 9 | 9 | 6/21 (28.6%) | 6/43 (14.0%) | — |
| EN 絶滅危惧IB類 | Botaurus stellaris stellaris サンカノゴイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/4 (0.0%) | 6/66 (9.1%) | — |
| EN 絶滅危惧IB類 | Platalea minor クロツラヘラサギ | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.24 Gbp 19.0x | 1,460 8.68 Mbp | 1 | 1 | 8 | 1/6 (16.7%) | 6/29 (20.7%) | 2024-04-05 |
| EN 絶滅危惧IB類 | Coturnicops exquisitus シマクイナ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/3 (0.0%) | 12/141 (8.5%) | — |
| EN 絶滅危惧IB類 | Rallina eurizonoides sepiaria オオクイナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/3 (0.0%) | 12/141 (8.5%) | — |
| EN 絶滅危惧IB類 | Numenius minutus コシャクシギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 34 | 2/9 (22.2%) | 30/87 (34.5%) | — |
| EN 絶滅危惧IB類 | Accipiter gularis iwasakii リュウキュウツミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 30 | 163 | 24/52 (46.2%) | 134/274 (48.9%) | — |
| EN 絶滅危惧IB類 | Aquila chrysaetos japonica イヌワシ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, — | 1.19 Gbp 100.0x | 348 16.9 Mbp | 8 | 14 | 163 | 7/13 (53.8%) | 134/274 (48.9%) | 2020-04-03 |
| EN 絶滅危惧IB類 | Buteo buteo toyoshimai オガサワラノスリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 20 | 163 | 16/29 (55.2%) | 134/274 (48.9%) | — |
| EN 絶滅危惧IB類 | Circus spilonotus spilonotus チュウヒ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 6 | 163 | 6/17 (35.3%) | 134/274 (48.9%) | — |
| EN 絶滅危惧IB類 | Nisaetus nipalensis orientalis クマタカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 5 | 163 | 4/11 (36.4%) | 134/274 (48.9%) | — |
| EN 絶滅危惧IB類 | Eurystomus orientalis calonyx ブッポウソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/4 (50.0%) | 3/12 (25.0%) | — |
| EN 絶滅危惧IB類 | Pitta nympha ヤイロチョウ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/15 (6.7%) | 1/47 (2.1%) | — |
| EN 絶滅危惧IB類 | Lanius cristatus superciliosus アカモズ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/30 (6.7%) | 2/34 (5.9%) | — |
| EN 絶滅危惧IB類 | Poecile varius namiyei ナミエヤマガラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/5 (0.0%) | 7/83 (8.4%) | — |
| EN 絶滅危惧IB類 | Poecile varius owstoni オーストンヤマガラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/5 (0.0%) | 7/83 (8.4%) | — |
| EN 絶滅危惧IB類 | Apalopteron familiare hahasima ハハジマメグロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 7/128 (5.5%) | — |
| EN 絶滅危惧IB類 | Locustella pleskei ウチヤマセンニュウ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/6 (16.7%) | 1/62 (1.6%) | — |
| EN 絶滅危惧IB類 | Locustella pryeri pryeri オオセッカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/6 (16.7%) | 1/62 (1.6%) | — |
| EN 絶滅危惧IB類 | Troglodytes troglodytes mosukei モスケミソサザイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/17 (0.0%) | 7/116 (6.0%) | — |
| EN 絶滅危惧IB類 | Luscinia komadori namiyei ホントウアカヒゲ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 24 | 0/6 (0.0%) | 23/291 (7.9%) | — |
| EN 絶滅危惧IB類 | Turdus celaenops アカコッコ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 19 | 1/86 (1.2%) | 14/216 (6.5%) | — |
| VU 絶滅危惧II類 | Coturnix japonica ウズラ | NT | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 928 Mbp 73.0x | 9,641 511 kbp | 2 | 2 | 84 | 1/15 (6.7%) | 28/203 (13.8%) | 2016-03-01 |
| VU 絶滅危惧II類 | Anas formosa トモエガモ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.24 Gbp 60.0x | 565,536 8.73 kbp | 1 | 1 | 111 | 1/1 (100.0%) | 59/199 (29.6%) | 2024-04-22 |
| VU 絶滅危惧II類 | Anser fabalis serrirostris ヒシクイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 111 | 4/15 (26.7%) | 59/199 (29.6%) | — |
| VU 絶滅危惧II類 | Branta bernicla orientalis コクガン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 111 | 2/9 (22.2%) | 59/199 (29.6%) | — |
| VU 絶滅危惧II類 | Tadorna tadorna ツクシガモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 111 | 0/6 (0.0%) | 59/199 (29.6%) | — |
| VU 絶滅危惧II類 | Phoebastria albatrus アホウドリ | VU | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 1.21 Gbp 44.0x | 36,840 68.7 kbp | 2 | 5 | 7 | 4/6 (66.7%) | 6/27 (22.2%) | 2020-08-22 |
| VU 絶滅危惧II類 | Oceanodroma monorhis ヒメクロウミツバメ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| VU 絶滅危惧II類 | Gorsachius goisagi ミゾゴイ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.19 Gbp 103.0x | 100,190 43.0 kbp | 1 | 3 | 7 | 2/4 (50.0%) | 6/66 (9.1%) | 2021-03-31 |
| VU 絶滅危惧II類 | Gorsachius melanolophus ズグロミゾゴイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 7 | 2/4 (50.0%) | 6/66 (9.1%) | — |
| VU 絶滅危惧II類 | Grus japonensis タンチョウ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.19 Gbp 55.0x | 57,394 78.4 kbp | 1 | 9 | 14 | 5/9 (55.6%) | 7/16 (43.8%) | 2019-05-08 |
| VU 絶滅危惧II類 | Grus monacha ナベヅル | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 67.0x | 95,217 38.5 kbp | 1 | 9 | 14 | 5/9 (55.6%) | 7/16 (43.8%) | 2020-04-08 |
| VU 絶滅危惧II類 | Grus vipio マナヅル | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 54.0x | 107,175 32.9 kbp | 1 | 1 | 14 | 1/4 (25.0%) | 7/16 (43.8%) | 2020-04-08 |
| VU 絶滅危惧II類 | Charadrius alexandrinus dealbatus シロチドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 3/58 (5.2%) | 8/84 (9.5%) | — |
| VU 絶滅危惧II類 | Himantopus himantopus himantopus セイタカシギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 2 | 3 | 1/3 (33.3%) | 2/8 (25.0%) | — |
| VU 絶滅危惧II類 | Limosa lapponica baueri オオソリハシシギ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.03 Gbp 71.0x | 139,617 21.3 kbp | 1 | 1 | 34 | 1/4 (25.0%) | 30/87 (34.5%) | 2017-12-15 |
| VU 絶滅危惧II類 | Numenius madagascariensis ホウロクシギ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 34 | 2/9 (22.2%) | 30/87 (34.5%) | — |
| VU 絶滅危惧II類 | Scolopax mira アマミヤマシギ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.09 Gbp 55.0x | 79,353 61.2 kbp | 1 | 4 | 34 | 4/4 (100.0%) | 30/87 (34.5%) | 2019-02-15 |
| VU 絶滅危惧II類 | Tringa erythropus ツルシギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 34 | 2/16 (12.5%) | 30/87 (34.5%) | — |
| VU 絶滅危惧II類 | Tringa glareola タカブシギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 34 | 2/16 (12.5%) | 30/87 (34.5%) | — |
| VU 絶滅危惧II類 | Tringa totanus ussuriensis アカアシシギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 34 | 2/16 (12.5%) | 30/87 (34.5%) | — |
| VU 絶滅危惧II類 | Rostratula benghalensis benghalensis タマシギ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.10 Gbp 67.0x | 33,928 78.7 kbp | 1 | 1 | 2 | 1/1 (100.0%) | 2/2 (100.0%) | 2020-07-10 |
| VU 絶滅危惧II類 | Glareola maldivarum ツバメチドリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/5 (20.0%) | 2/11 (18.2%) | — |
| VU 絶滅危惧II類 | Larus saundersi ズグロカモメ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 17 | 2/12 (16.7%) | 10/103 (9.7%) | — |
| VU 絶滅危惧II類 | Sterna albifrons sinensis コアジサシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/7 (0.0%) | 10/103 (9.7%) | — |
| VU 絶滅危惧II類 | Sterna bergii cristata オオアジサシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/8 (0.0%) | 10/103 (9.7%) | — |
| VU 絶滅危惧II類 | Sterna dougallii bangsi ベニアジサシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/10 (10.0%) | 10/103 (9.7%) | — |
| VU 絶滅危惧II類 | Sterna sumatrana エリグロアジサシ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/10 (10.0%) | 10/103 (9.7%) | — |
| VU 絶滅危惧II類 | Cepphus carbo ケイマフリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 11 | 1/3 (33.3%) | 6/23 (26.1%) | — |
| VU 絶滅危惧II類 | Synthliboramphus wumizusume カンムリウミスズメ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/4 (0.0%) | 6/23 (26.1%) | — |
| VU 絶滅危惧II類 | Butastur indicus サシバ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 75.0x | 67,994 36.2 kbp | 1 | 3 | 163 | 3/4 (75.0%) | 134/274 (48.9%) | 2022-12-09 |
| VU 絶滅危惧II類 | Haliaeetus albicilla albicilla オジロワシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 5 | 10 | 163 | 6/10 (60.0%) | 134/274 (48.9%) | — |
| VU 絶滅危惧II類 | Haliaeetus pelagicus オオワシ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 49.0x | 33,489 86.6 kbp | 1 | 10 | 163 | 6/10 (60.0%) | 134/274 (48.9%) | 2020-08-22 |
| VU 絶滅危惧II類 | Otus elegans interpositus ダイトウコノハズク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 14 | 29 | 14/38 (36.8%) | 26/183 (14.2%) | — |
| VU 絶滅危惧II類 | Otus lempiji pryeri リュウキュウオオコノハズク | — | ✓ | — | — | — | No | — | — | — | 1 | 14 | 29 | 14/38 (36.8%) | 26/183 (14.2%) | — |
| VU 絶滅危惧II類 | Dendrocopos leucotos owstoni オーストンオオアカゲラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 12 | 1/13 (7.7%) | 8/222 (3.6%) | — |
| VU 絶滅危惧II類 | Dryocopus martius martius クマゲラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/6 (0.0%) | 8/222 (3.6%) | — |
| VU 絶滅危惧II類 | Falco peregrinus japonensis ハヤブサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 9 | 55 | 65 | 26/39 (66.7%) | 36/67 (53.7%) | — |
| VU 絶滅危惧II類 | Pericrocotus divaricatus divaricatus サンショウクイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/14 (0.0%) | 1/86 (1.2%) | — |
| VU 絶滅危惧II類 | Phylloscopus ijimae イイジマムシクイ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 9 | 5/86 (5.8%) | 6/88 (6.8%) | — |
| VU 絶滅危惧II類 | Luscinia akahige tanensis タネコマドリ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 24 | 0/6 (0.0%) | 23/291 (7.9%) | — |
| VU 絶滅危惧II類 | Luscinia komadori komadori アカヒゲ | — | — | — | — | — | No | — | — | — | 0 | 0 | 24 | 0/6 (0.0%) | 23/291 (7.9%) | — |
| VU 絶滅危惧II類 | Zoothera dauma major オオトラツグミ | NT | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/19 (0.0%) | 14/216 (6.5%) | — |
| VU 絶滅危惧II類 | Emberiza yessoensis yessoensis コジュリン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 46 | 2/44 (4.5%) | 39/288 (13.5%) | — |
| NT 準絶滅危惧 | Syrmaticus soemmerringii ijimae コシジロヤマドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 84 | 1/5 (20.0%) | 28/203 (13.8%) | — |
| NT 準絶滅危惧 | Syrmaticus soemmerringii soemmerringii アカヤマドリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 84 | 1/5 (20.0%) | 28/203 (13.8%) | — |
| NT 準絶滅危惧 | Anser albifrons albifrons マガン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 111 | 4/15 (26.7%) | 59/199 (29.6%) | — |
| NT 準絶滅危惧 | Anser fabalis middendorffii オオヒシクイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 111 | 4/15 (26.7%) | 59/199 (29.6%) | — |
| NT 準絶滅危惧 | Columba janthina janthina カラスバト | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 10 | 22 | 3/39 (7.7%) | 9/353 (2.5%) | — |
| NT 準絶滅危惧 | Oceanodroma matsudairae クロウミツバメ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| NT 準絶滅危惧 | Oceanodroma tristrami オーストンウミツバメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| NT 準絶滅危惧 | Egretta eulophotes カラシラサギ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/12 (8.3%) | 6/66 (9.1%) | — |
| NT 準絶滅危惧 | Egretta intermedia intermedia チュウサギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/12 (0.0%) | 6/66 (9.1%) | — |
| NT 準絶滅危惧 | Ixobrychus sinensis sinensis ヨシゴイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 7 | 0/9 (0.0%) | 6/66 (9.1%) | — |
| NT 準絶滅危惧 | Porzana fusca erythrothorax ヒクイナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 18 | 1/9 (11.1%) | 12/141 (8.5%) | — |
| NT 準絶滅危惧 | Caprimulgus indicus jotaka ヨタカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 1/30 (3.3%) | 4/74 (5.4%) | — |
| NT 準絶滅危惧 | Calidris alpina ハマシギ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.27 Gbp 48.0x | 98,812 98.5 kbp | 1 | 9 | 34 | 6/24 (25.0%) | 30/87 (34.5%) | 2023-11-14 |
| NT 準絶滅危惧 | Gallinago hardwickii オオジシギ | NT | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.14 Gbp 105.0x | 119,495 25.4 kbp | 1 | 11 | 34 | 11/13 (84.6%) | 30/87 (34.5%) | 2022-11-10 |
| NT 準絶滅危惧 | Larus schistisagus オオセグロカモメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 17 | 4/28 (14.3%) | 10/103 (9.7%) | — |
| NT 準絶滅危惧 | Pandion haliaetus haliaetus ミサゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 2 | 2 | 1/2 (50.0%) | 1/2 (50.0%) | — |
| NT 準絶滅危惧 | Accipiter gentilis fujiyamae オオタカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 6 | 30 | 163 | 24/52 (46.2%) | 134/274 (48.9%) | — |
| NT 準絶滅危惧 | Accipiter nisus nisosimilis ハイタカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 30 | 163 | 24/52 (46.2%) | 134/274 (48.9%) | — |
| NT 準絶滅危惧 | Pernis ptilorhynchus orientalis ハチクマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 163 | 1/5 (20.0%) | 134/274 (48.9%) | — |
| NT 準絶滅危惧 | Poecile varius olivaceus オリイヤマガラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/5 (0.0%) | 7/83 (8.4%) | — |
| NT 準絶滅危惧 | Locustella lanceolata マキノセンニュウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/62 (1.6%) | — |
| NT 準絶滅危惧 | Emberiza sulphurata ノジコ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 46 | 2/44 (4.5%) | 39/288 (13.5%) | — |
| DD 情報不足 | Tetrastes bonasia vicinitas エゾライチョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 84 | 0/2 (0.0%) | 28/203 (13.8%) | — |
| DD 情報不足 | Aix galericulata オシドリ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.08 Gbp 230.0x | 34,019 77.4 kbp | 1 | 2 | 111 | 2/3 (66.7%) | 59/199 (29.6%) | 2022-08-16 |
| DD 情報不足 | Anser cygnoides サカツラガン | VU | ✓ | ✓ | ✓ | ✓ | Yes (7) | Chromosome, Reference | 1.22 Gbp 70.0x | 116 39.7 Mbp | 7 | 14 | 111 | 4/15 (26.7%) | 59/199 (29.6%) | 2015-04-08 |
| DD 情報不足 | Aythya baeri アカハジロ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 1.14 Gbp 162.1x | 227 29.1 Mbp | 1 | 6 | 111 | 4/11 (36.4%) | 59/199 (29.6%) | 2022-11-27 |
| DD 情報不足 | Tadorna ferruginea アカツクシガモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 111 | 0/6 (0.0%) | 59/199 (29.6%) | — |
| DD 情報不足 | Pterodroma hypoleuca シロハラミズナギドリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/37 (0.0%) | 4/114 (3.5%) | — |
| DD 情報不足 | Platalea leucorodia leucorodia ヘラサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/6 (16.7%) | 6/29 (20.7%) | — |
| DD 情報不足 | Threskiornis melanocephalus クロトキ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/4 (25.0%) | 6/29 (20.7%) | — |
| DD 情報不足 | Grus grus lilfordi クロヅル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 9 | 14 | 5/9 (55.6%) | 7/16 (43.8%) | — |
| DD 情報不足 | Vanellus cinereus ケリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 9 | 1/11 (9.1%) | 8/84 (9.5%) | — |
| DD 情報不足 | Calidris ptilocnemis quarta チシマシギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 34 | 6/24 (25.0%) | 30/87 (34.5%) | — |
| DD 情報不足 | Limnodromus semipalmatus シベリアオオハシシギ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 34 | 1/4 (25.0%) | 30/87 (34.5%) | — |
| DD 情報不足 | Brachyramphus perdix マダラウミスズメ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/3 (0.0%) | 6/23 (26.1%) | — |
| DD 情報不足 | Cettia diphone restricta ダイトウウグイス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/15 (6.7%) | 1/19 (5.3%) | — |
| DD 情報不足 | Phylloscopus examinandus オオムシクイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 9 | 5/86 (5.8%) | 6/88 (6.8%) | — |
| DD 情報不足 | Ficedula narcissina owstoni リュウキュウキビタキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 24 | 2/34 (5.9%) | 23/291 (7.9%) | — |
| DD 情報不足 | Zoothera dauma iriomotensis コトラツグミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/19 (0.0%) | 14/216 (6.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Histrionicus histrionicu 東北地方以北のシノリガモ繁殖個体群 | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 111 | 0/1 (0.0%) | 59/199 (29.6%) | — |
| LP 絶滅のおそれの ある地域個体群 | Podiceps cristatus cristatus 青森県のカンムリカイツブリ繁殖個体群 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 1 | 2 | 1/6 (16.7%) | 2/17 (11.8%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae orientalis マダラトカゲモドキ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae toyamai イヘヤトカゲモドキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae yamashinae クメトカゲモドキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| CR 絶滅危惧IA類 | Takydromus toyamai ミヤコカナヘビ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/24 (0.0%) | 19/404 (4.7%) | — |
| CR 絶滅危惧IA類 | Opisthotropis kikuzatoi キクザトサワヘビ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/21 (0.0%) | 25/1007 (2.5%) | — |
| EN 絶滅危惧IB類 | Caretta caretta アカウミガメ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.13 Gbp 109.0x | 2,751 18.2 Mbp | 1 | 1 | 5 | 1/1 (100.0%) | 3/14 (21.4%) | 2022-06-07 |
| EN 絶滅危惧IB類 | Eretmochelys imbricata タイマイ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.30 Gbp 81.0x | 303 82.0 Mbp | 1 | 1 | 5 | 1/1 (100.0%) | 3/14 (21.4%) | 2023-05-15 |
| EN 絶滅危惧IB類 | Goniurosaurus kuroiwae sengokui ケラマトカゲモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| EN 絶滅危惧IB類 | Goniurosaurus splendens オビトカゲモドキ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| EN 絶滅危惧IB類 | Plestiodon takarai センカクトカゲ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| EN 絶滅危惧IB類 | Calamaria pfefferi ミヤコヒメヘビ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 36 | 1/18 (5.6%) | 25/1007 (2.5%) | — |
| EN 絶滅危惧IB類 | Elaphe carinata carinata シュウダ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/20 (0.0%) | 25/1007 (2.5%) | — |
| EN 絶滅危惧IB類 | Elaphe carinata yonaguniensis ヨナグニシュウダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/20 (0.0%) | 25/1007 (2.5%) | — |
| EN 絶滅危惧IB類 | Hebius concelarus ミヤコヒバァ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/42 (0.0%) | 25/1007 (2.5%) | — |
| VU 絶滅危惧II類 | Chelonia mydas mydas アオウミガメ | — | — | — | ✓ | — | No | — | — | — | 3 | 3 | 5 | 1/1 (100.0%) | 3/14 (21.4%) | — |
| VU 絶滅危惧II類 | Cuora flavomarginata evelynae ヤエヤマセマルハコガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/16 (12.5%) | 4/108 (3.7%) | — |
| VU 絶滅危惧II類 | Geoemyda japonica リュウキュウヤマガメ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/2 (0.0%) | 4/108 (3.7%) | — |
| VU 絶滅危惧II類 | Mauremys mutica kami ヤエヤマイシガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 3 | 5 | 2/20 (10.0%) | 4/108 (3.7%) | — |
| VU 絶滅危惧II類 | Goniurosaurus kuroiwae kuroiwae クロイワトカゲモドキ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| VU 絶滅危惧II類 | Gekko yakuensis ヤクヤモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/91 (2.2%) | 5/1730 (0.3%) | — |
| VU 絶滅危惧II類 | Hemidactylus bowringii タシロヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/226 (0.0%) | 5/1730 (0.3%) | — |
| VU 絶滅危惧II類 | Perochirus ateles ミナミトリシマヤモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/2 (0.0%) | 5/1730 (0.3%) | — |
| VU 絶滅危惧II類 | Diploderma polygonatum donan ヨナグニキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/45 (0.0%) | 9/576 (1.6%) | — |
| VU 絶滅危惧II類 | Diploderma polygonatum polygonatum オキナワキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/45 (0.0%) | 9/576 (1.6%) | — |
| VU 絶滅危惧II類 | Emoia atrocostata atrocostata ミヤコトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/36 (0.0%) | 6/1536 (0.4%) | — |
| VU 絶滅危惧II類 | Plestiodon barbouri バーバートカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| VU 絶滅危惧II類 | Plestiodon kishinouyei キシノウエトカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| VU 絶滅危惧II類 | Plestiodon marginatus オキナワトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| VU 絶滅危惧II類 | Takydromus dorsalis サキシマカナヘビ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/24 (0.0%) | 19/404 (4.7%) | — |
| VU 絶滅危惧II類 | Zootoca vivipara コモチカナヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 1.44 Gbp 34.0x | 731 3.45 Mbp | 3 | 3 | 36 | 1/2 (50.0%) | 19/404 (4.7%) | 2020-04-01 |
| VU 絶滅危惧II類 | Calamaria pavimentata miyarai ミヤラヒメヘビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 36 | 1/18 (5.6%) | 25/1007 (2.5%) | — |
| VU 絶滅危惧II類 | Elaphe taeniura schmackeri サキシマスジオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/20 (0.0%) | 25/1007 (2.5%) | — |
| VU 絶滅危惧II類 | Achalinus formosanus chigirai ヤエヤマタカチホヘビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/34 (0.0%) | 0/44 (0.0%) | — |
| VU 絶滅危惧II類 | Emydocephalus ijimae イイジマウミヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.63 Gbp 82.0x | 171,534 18.5 kbp | 1 | 1 | 11 | 1/2 (50.0%) | 9/56 (16.1%) | 2019-01-09 |
| VU 絶滅危惧II類 | Laticauda laticaudata ヒロオウミヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.56 Gbp 133.0x | 89,677 35.6 kbp | 1 | 3 | 12 | 2/7 (28.6%) | 8/280 (2.9%) | 2019-01-09 |
| VU 絶滅危惧II類 | Laticauda semifasciata エラブウミヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 12 | 2/7 (28.6%) | 8/280 (2.9%) | — |
| VU 絶滅危惧II類 | Sinomicrurus macclellandi iwasakii イワサキワモンベニヘビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/14 (0.0%) | 8/280 (2.9%) | — |
| NT 準絶滅危惧 | Mauremys japonica ニホンイシガメ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 5 | 2/20 (10.0%) | 4/108 (3.7%) | — |
| NT 準絶滅危惧 | Gekko shibatai タカラヤモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/91 (2.2%) | 5/1730 (0.3%) | — |
| NT 準絶滅危惧 | Gekko sp. 1 オキナワヤモリ | — | — | — | — | — | No | — | — | — | 0 | 2 | 5 | 2/91 (2.2%) | 5/1730 (0.3%) | — |
| NT 準絶滅危惧 | Gekko tawaensis タワヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/91 (2.2%) | 5/1730 (0.3%) | — |
| NT 準絶滅危惧 | Diploderma polygonatum ishigakiense サキシマキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/45 (0.0%) | 9/576 (1.6%) | — |
| NT 準絶滅危惧 | Cryptoblepharus nigropunctatus オガサワラトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/52 (1.9%) | 6/1536 (0.4%) | — |
| NT 準絶滅危惧 | Plestiodon oshimensis オオシマトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| NT 準絶滅危惧 | Plestiodon stimpsonii イシガキトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| NT 準絶滅危惧 | Takydromus amurensis アムールカナヘビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/24 (0.0%) | 19/404 (4.7%) | — |
| NT 準絶滅危惧 | Cyclophiops herminae サキシマアオヘビ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/0 | 25/1007 (2.5%) | — |
| NT 準絶滅危惧 | Dinodon rufozonatum rufozonatum アカマダラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/67 (0.0%) | 25/1007 (2.5%) | — |
| NT 準絶滅危惧 | Lycodon ruhstrati multifasciatus サキシマバイカダ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/67 (0.0%) | 25/1007 (2.5%) | — |
| NT 準絶滅危惧 | Pareas iwasakii イワサキセダカヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/39 (2.6%) | 1/46 (2.2%) | — |
| NT 準絶滅危惧 | Achalinus werneri アマミタカチホヘビ | NT | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/34 (0.0%) | 0/44 (0.0%) | — |
| NT 準絶滅危惧 | Sinomicrurus japonicus boettgeri ハイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/14 (0.0%) | 8/280 (2.9%) | — |
| NT 準絶滅危惧 | Sinomicrurus japonicus japonicus ヒャン | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 12 | 0/14 (0.0%) | 8/280 (2.9%) | — |
| NT 準絶滅危惧 | Protobothrops tokarensis トカラハブ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 27 | 2/16 (12.5%) | 18/402 (4.5%) | — |
| DD 情報不足 | Pelodiscus sinensis ニホンスッポン | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.20 Gbp 105.0x | 205,379 22.0 kbp | 1 | 1 | 5 | 1/19 (5.3%) | 4/51 (7.8%) | 2012-07-24 |
| DD 情報不足 | Plestiodon kuchinoshimensis クチノシマトカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| DD 情報不足 | Hebius vibakari danjoensis ダンジョヒバカリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/42 (0.0%) | 25/1007 (2.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Lepidodactylus lugubris 大東諸島のオガサワラヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 5 | 1/34 (2.9%) | 5/1730 (0.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ateuchosaurus pellopleurus 三島のヘリグロヒメトカゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/2 (0.0%) | 6/1536 (0.4%) | — |
| LP 絶滅のおそれの ある地域個体群 | Plestiodon latiscutatus 三宅島、八丈島、青ヶ島のオカダトカゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| LP 絶滅のおそれの ある地域個体群 | Takydromus smaragdinus 沖永良部島、徳之島のアオカナヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/24 (0.0%) | 19/404 (4.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Dinodon rufozonatum walli 宮古諸島のサキシママダラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/67 (0.0%) | 25/1007 (2.5%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| CR 絶滅危惧IA類 | Hynobius abei アベサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| CR 絶滅危惧IA類 | Hynobius amakusaensis アマクササンショウウオ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| CR 絶滅危惧IA類 | Hynobius mikawaensis ミカワサンショウウオ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| CR 絶滅危惧IA類 | Hynobius tosashimizuensis トサシミズサンショウウオ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| CR 絶滅危惧IA類 | Onychodactylus tsukubaensis ツクバハコネサンショウウオ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius abuensis アブサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius akiensis アキサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius hidamontanus ハクバサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius iwami イワミサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius katoi アカイシサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius naevius ブチサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius osumiensis オオスミサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius setoi サンインサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius shinichisatoi ソボサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius takedai ホクリクサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius tsurugiensis ツルギサンショウウオ | EN | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Salamandrella keyserlingii キタサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Babina holsti ホルストガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/3 (0.0%) | 10/706 (1.4%) | — |
| EN 絶滅危惧IB類 | Babina subaspera オットンガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/3 (0.0%) | 10/706 (1.4%) | — |
| EN 絶滅危惧IB類 | Glandirana susurra サドガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 18 | 1/6 (16.7%) | 10/706 (1.4%) | — |
| EN 絶滅危惧IB類 | Odorrana ishikawae オキナワイシカワガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/97 (0.0%) | 10/706 (1.4%) | — |
| EN 絶滅危惧IB類 | Odorrana splendida アマミイシカワガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/97 (0.0%) | 10/706 (1.4%) | — |
| EN 絶滅危惧IB類 | Odorrana utsunomiyaorum コガタハナサキガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/97 (0.0%) | 10/706 (1.4%) | — |
| EN 絶滅危惧IB類 | Pelophylax porosus brevipodus ナゴヤダルマガエル | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 18 | 0/118 (0.0%) | 10/706 (1.4%) | — |
| EN 絶滅危惧IB類 | Limnonectes namiyei ナミエガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/169 (0.0%) | 2/861 (0.2%) | — |
| VU 絶滅危惧II類 | Hynobius bakan ヤマグチサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius boulengeri オオダイガハラサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius dunni オオイタサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius fossigenus ヒガシヒダサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius guttatus マホロバサンショウウオ | NT | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius ikioi ベッコウサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius kuishiensis イヨシマサンショウウオ | VU | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius nebulosus カスミサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius okiensis オキサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius oyamai チクシブチサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius sematonotos チュウゴクブチサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius setouchi セトウチサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius stejnegeri コガタブチサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius tokyoensis トウキョウサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius utsunomiyaorum ヒバサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius vandenburghi ヤマトサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Onychodactylus kinneburi シコクハコネサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Andrias japonicus オオサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/5 (0.0%) | — |
| VU 絶滅危惧II類 | Echinotriton andersoni イボイモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 5/162 (3.1%) | — |
| VU 絶滅危惧II類 | Nidirana okinavana ヤエヤマハラブチガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/34 (0.0%) | 10/706 (1.4%) | — |
| VU 絶滅危惧II類 | Odorrana amamiensis アマミハナサキガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/97 (0.0%) | 10/706 (1.4%) | — |
| VU 絶滅危惧II類 | Odorrana narina ハナサキガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/97 (0.0%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Hynobius hirosei イシヅチサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Hynobius kimurae ヒダサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Hynobius lichenatus トウホクサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Hynobius nigrescens クロサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Hynobius tsuensis ツシマサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Onychodactylus fuscus タダミハコネサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Onychodactylus intermedius バンダイハコネサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Cynops ensicauda シリケンイモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/7 (0.0%) | 5/162 (3.1%) | — |
| NT 準絶滅危惧 | Cynops pyrrhogaster アカハライモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/7 (0.0%) | 5/162 (3.1%) | — |
| NT 準絶滅危惧 | Bufo gargarizans miyakonis ミヤコヒキガエル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 3 | 10 | 2/33 (6.1%) | 6/824 (0.7%) | — |
| NT 準絶滅危惧 | Odorrana supranarina オオハナサキガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/97 (0.0%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Pelophylax nigromaculatus トノサマガエル | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/118 (0.0%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Pelophylax porosus porosus トウキョウダルマガエル | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 18 | 0/118 (0.0%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Rana kobai アマミアカガエル | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 18 | 3/87 (3.4%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Rana tagoi okiensis オキタゴガエル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 18 | 3/87 (3.4%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Rana tagoi yakushimensis ヤクシマタゴガエル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 18 | 3/87 (3.4%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Rana tsushimensis ツシマアカガエル | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 18 | 3/87 (3.4%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Rana uenoi チョウセンヤマアカガエル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 18 | 3/87 (3.4%) | 10/706 (1.4%) | — |
| NT 準絶滅危惧 | Rana ulma リュウキュウアカガエル | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 18 | 3/87 (3.4%) | 10/706 (1.4%) | — |
| DD 情報不足 | Hynobius retardatus エゾサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Acipenser medirostris チョウザメ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 10 | 4/38 (10.5%) | 6/60 (10.0%) | — |
| EX 絶滅 | Gnathopogon elongatus suwae スワモロコ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 15 | 0/13 (0.0%) | 9/349 (2.6%) | — |
| EX 絶滅 | Pungitius kaibarae ミナミトミヨ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 14 | 1/45 (2.2%) | 4/57 (7.0%) | — |
| EW 野生絶滅 | Oncorhynchus kawamurae クニマス | EW | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 20 | 59 | 7/42 (16.7%) | 22/678 (3.2%) | — |
| CR 絶滅危惧IA類 | Echidna rhodochilus ナミダカワウツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/8 (0.0%) | 2/189 (1.1%) | — |
| CR 絶滅危惧IA類 | Uropterygius concolor コゲウツボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/14 (0.0%) | 2/189 (1.1%) | — |
| CR 絶滅危惧IA類 | Acheilognathus cyanostigma イチモンジタナゴ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| CR 絶滅危惧IA類 | Acheilognathus longipinnis イタセンパラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| CR 絶滅危惧IA類 | Acheilognathus tabira jordani ミナミアカヒレタビラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| CR 絶滅危惧IA類 | Acheilognathus tabira nakamurae セボシタビラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| CR 絶滅危惧IA類 | Acheilognathus typus ゼニタナゴ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| CR 絶滅危惧IA類 | Aphyocypris chinensis ヒナモロコ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 34 | 0/9 (0.0%) | 18/205 (8.8%) | — |
| CR 絶滅危惧IA類 | Carassius sp. フナ属の１種（琉球列島） | — | ✓ | — | — | — | No | — | — | — | 0 | 12 | 79 | 3/46 (6.5%) | 51/2339 (2.2%) | — |
| CR 絶滅危惧IA類 | Gnathopogon caerulescens ホンモロコ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/13 (0.0%) | 9/349 (2.6%) | — |
| CR 絶滅危惧IA類 | Ischikauia steenackeri ワタカ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 34 | 0/1 (0.0%) | 18/205 (8.8%) | — |
| CR 絶滅危惧IA類 | Pseudorasbora pugnax ウシモツゴ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 15 | 1/7 (14.3%) | 9/349 (2.6%) | — |
| CR 絶滅危惧IA類 | Pseudorasbora pumila シナイモツゴ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 15 | 1/7 (14.3%) | 9/349 (2.6%) | — |
| CR 絶滅危惧IA類 | Rhodeus atremius suigensis スイゲンゼニタナゴ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/50 (2.0%) | 1/109 (0.9%) | — |
| CR 絶滅危惧IA類 | Rhodeus ocellatus kurumeus ニッポンバラタナゴ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/50 (2.0%) | 1/109 (0.9%) | — |
| CR 絶滅危惧IA類 | Sarcocheilichthys biwaensis アブラヒガイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/15 (0.0%) | 9/349 (2.6%) | — |
| CR 絶滅危惧IA類 | Tanakia tanago ミヤコタナゴ | EN | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/8 (0.0%) | 1/109 (0.9%) | — |
| CR 絶滅危惧IA類 | Cobitis minamorii minamorii サンヨウコガタスジシマドジョウ | — | ✓ | — | — | — | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| CR 絶滅危惧IA類 | Cobitis minamorii yodoensis ヨドコガタスジシマドジョウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| CR 絶滅危惧IA類 | Cobitis striata hakataensis ハカタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| CR 絶滅危惧IA類 | Cobitis takenoi タンゴスジシマドジョウ | CR | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| CR 絶滅危惧IA類 | Parabotia curtus アユモドキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/7 (0.0%) | 6/64 (9.4%) | — |
| CR 絶滅危惧IA類 | Plecoglossus altivelis ryukyuensis リュウキュウアユ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 4 | 4 | 4 | 1/1 (100.0%) | 1/1 (100.0%) | — |
| CR 絶滅危惧IA類 | Neosalanx reganius アリアケヒメシラウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/30 (3.3%) | 3/56 (5.4%) | — |
| CR 絶滅危惧IA類 | Salanx ariakensis アリアケシラウオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 3/56 (5.4%) | — |
| CR 絶滅危惧IA類 | Oncorhynchus nerka ベニザケ（ヒメマス） | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 2.65 Gbp 23.0x | 15,727 2.84 Mbp | 2 | 20 | 59 | 7/42 (16.7%) | 22/678 (3.2%) | 2019-06-07 |
| CR 絶滅危惧IA類 | Monopterus sp. タウナギ属の１種（琉球列島） | — | — | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/8 (12.5%) | 1/71 (1.4%) | — |
| CR 絶滅危惧IA類 | Gasterosteus aculeatus subsp. 2 ハリヨ | — | — | — | — | — | No | — | — | — | 7 | 8 | 14 | 2/9 (22.2%) | 4/57 (7.0%) | — |
| CR 絶滅危惧IA類 | Pungitius sp. 3 トミヨ属雄物型 | — | — | — | — | — | No | — | — | — | 0 | 5 | 14 | 1/45 (2.2%) | 4/57 (7.0%) | — |
| CR 絶滅危惧IA類 | Pungitius sp. 4 ムサシトミヨ | — | — | — | — | — | No | — | — | — | 0 | 5 | 14 | 1/45 (2.2%) | 4/57 (7.0%) | — |
| CR 絶滅危惧IA類 | Microphis argulus ホシイッセンヨウジ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 37 | 5/29 (17.2%) | 23/603 (3.8%) | — |
| CR 絶滅危惧IA類 | Microphis jagorii ヒメテングヨウジ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 37 | 1/3 (33.3%) | 23/603 (3.8%) | — |
| CR 絶滅危惧IA類 | Microphis retzii タニヨウジ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 37 | 0/13 (0.0%) | 23/603 (3.8%) | — |
| CR 絶滅危惧IA類 | Cestraeus plicatilis カワボラ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/3 (0.0%) | 6/366 (1.6%) | — |
| CR 絶滅危惧IA類 | Tetraroge barbata アゴヒゲオコゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/27 (0.0%) | — |
| CR 絶滅危惧IA類 | Tetraroge nigra ヒゲソリオコゼ | LC | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/27 (0.0%) | — |
| CR 絶滅危惧IA類 | Yarica hyalosoma カガミテンジクダイ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.03 Gbp 135.0x | 168,358 10.6 kbp | 1 | 3 | 17 | 3/122 (2.5%) | 16/583 (2.7%) | 2024-03-19 |
| CR 絶滅危惧IA類 | Lutjanus goldiei ウラウチフエダイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/122 (2.5%) | 4/330 (1.2%) | — |
| CR 絶滅危惧IA類 | Sillago parvisquamis アオギス | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/106 (0.0%) | 0/113 (0.0%) | — |
| CR 絶滅危惧IA類 | Toxotes jaculatrix テッポウウオ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 622 Mbp 60.0x | 194 15.6 Mbp | 2 | 5 | 5 | 3/7 (42.9%) | 3/7 (42.9%) | 2021-04-15 |
| CR 絶滅危惧IA類 | Mesopristes argenteus ニセシマイサキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 6/56 (10.7%) | — |
| CR 絶滅危惧IA類 | Mesopristes cancellatus ヨコシマイサキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 6/56 (10.7%) | — |
| CR 絶滅危惧IA類 | Mesopristes iravi シミズシマイサキ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 6/56 (10.7%) | — |
| CR 絶滅危惧IA類 | Enneapterygius cheni ウラウチヘビギンポ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/101 (0.0%) | 0/256 (0.0%) | — |
| CR 絶滅危惧IA類 | Omobranchus ferox カワギンポ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/45 (0.0%) | 4/459 (0.9%) | — |
| CR 絶滅危惧IA類 | Omox biporos ヒルギギンポ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Rhyacichthys aspro ツバサハゼ | DD | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 607 Mbp 28.0x | 4,396 1.56 Mbp | 1 | 1 | 1 | 1/2 (50.0%) | 1/3 (33.3%) | 2024-02-26 |
| CR 絶滅危惧IA類 | Butis amboinensis ヤエヤマノコギリハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/9 (0.0%) | 12/282 (4.3%) | — |
| CR 絶滅危惧IA類 | Bathygobius sp. カワクモハゼ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 30 | 0/34 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Callogobius sp. ミスジハゼ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 30 | 0/23 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Cristatogobius aurimaculatus ヒメトサカハゼ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/2 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Cristatogobius nonatoae クロトサカハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/2 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Eviota ocellifer ウラウチイソハゼ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/188 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Glossogobius aureus コンジキハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/74 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Glossogobius bicirrhosus アゴヒゲハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/74 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Gymnogobius isaza イサザ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Gymnogobius nakamurae コシノハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Gymnogobius sp. 2 ホクリクジュズカケハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Lentipes armatus ヨロイボウズハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/14 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Luciogobius albus ドウクツミミズハゼ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/42 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Oxyurichthys takagi シマサルハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/22 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Rhinogobius sp. BB アオバラヨシノボリ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 30 | 1/126 (0.8%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Scartelaos histophorus トカゲハゼ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 695 Mbp 72.0x | 209,353 8.81 kbp | 1 | 1 | 30 | 1/7 (14.3%) | 20/2517 (0.8%) | 2014-12-02 |
| CR 絶滅危惧IA類 | Sicyopus zosterophorus アカボウズハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/9 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Smilosicyopus leprurus カエルハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/6 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Stiphodon alcedo ヒスイボウズハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/29 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Stiphodon atropurpureus コンテリボウズハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/29 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Stiphodon imperiorientis ハヤセボウズハゼ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/29 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Parioglossus interruptus ヒメサツキハゼ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/11 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Parioglossus taeniatus コマチハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/11 (0.0%) | 20/2517 (0.8%) | — |
| CR 絶滅危惧IA類 | Macropodus opercularis タイワンキンギョ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 483 Mbp 150.0x | 151 19.2 Mbp | 2 | 2 | 8 | 1/7 (14.3%) | 3/168 (1.8%) | 2023-05-15 |
| EN 絶滅危惧IB類 | Anguilla japonica ニホンウナギ | EN | ✓ | ✓ | ✓ | ✓ | Yes (8) | Chromosome, Reference | 1.03 Gbp 234.0x | 811 21.5 Mbp | 8 | 19 | 19 | 8/22 (36.4%) | 8/22 (36.4%) | 2014-03-18 |
| EN 絶滅危惧IB類 | Nematalosa japonica ドロクイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 35 | 1/10 (10.0%) | 18/449 (4.0%) | — |
| EN 絶滅危惧IB類 | Coilia nasus エツ | EN | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 852 Mbp 43.0x | 149 26.6 Mbp | 2 | 2 | 7 | 1/13 (7.7%) | 6/238 (2.5%) | 2019-08-16 |
| EN 絶滅危惧IB類 | Abbottina rivularis ツチフキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/5 (0.0%) | 9/349 (2.6%) | — |
| EN 絶滅危惧IB類 | Acheilognathus melanogaster タナゴ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| EN 絶滅危惧IB類 | Acheilognathus tabira erythropterus アカヒレタビラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| EN 絶滅危惧IB類 | Acheilognathus tabira tabira シロヒレタビラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| EN 絶滅危惧IB類 | Acheilognathus tabira tohokuensis キタノアカヒレタビラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/109 (0.9%) | — |
| EN 絶滅危惧IB類 | Biwia yodoensis ヨドゼゼラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/3 (0.0%) | 9/349 (2.6%) | — |
| EN 絶滅危惧IB類 | Carassius buergeri grandoculis ニゴロブナ | — | ✓ | — | ✓ | — | No | — | — | — | 6 | 12 | 79 | 3/46 (6.5%) | 51/2339 (2.2%) | — |
| EN 絶滅危惧IB類 | Carassius cuvieri ゲンゴロウブナ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 79 | 3/46 (6.5%) | 51/2339 (2.2%) | — |
| EN 絶滅危惧IB類 | Hemigrammocypris neglectus カワバタモロコ | LC | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 34 | 0/1 (0.0%) | 18/205 (8.8%) | — |
| EN 絶滅危惧IB類 | Rhodeus atremius atremius カゼトゲタナゴ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/50 (2.0%) | 1/109 (0.9%) | — |
| EN 絶滅危惧IB類 | Tribolodon nakamurai ウケクチウグイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 73 | 0/8 (0.0%) | 37/1258 (2.9%) | — |
| EN 絶滅危惧IB類 | Cobitis kaibarai アリアケスジシマドジョウ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis magnostriata オオガタスジシマドジョウ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis minamorii oumiensis ビワコガタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis minamorii saninensis サンインコガタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis minamorii tokaiensis トウカイコガタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis sakahoko オオヨドシマドジョウ | EN | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis shikokuensis ヒナイシドジョウ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis striata fuchigamii オンガスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis takatsuensis イシドジョウ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| EN 絶滅危惧IB類 | Lefua costata nikkonis エゾホトケドジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/14 (0.0%) | 9/971 (0.9%) | — |
| EN 絶滅危惧IB類 | Lefua echigonia ホトケドジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/14 (0.0%) | 9/971 (0.9%) | — |
| EN 絶滅危惧IB類 | Lefua tokaiensis トウカイナガレホトケドジョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 11 | 0/14 (0.0%) | 9/971 (0.9%) | — |
| EN 絶滅危惧IB類 | Lefua torrentis ナガレホトケドジョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 11 | 0/14 (0.0%) | 9/971 (0.9%) | — |
| EN 絶滅危惧IB類 | Tachysurus ichikawai ネコギギ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 12 | 3/34 (8.8%) | 8/254 (3.1%) | — |
| EN 絶滅危惧IB類 | Hucho perryi イトウ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 59 | 0/1 (0.0%) | 22/678 (3.2%) | — |
| EN 絶滅危惧IB類 | Hippichthys heptagonus アミメカワヨウジ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 37 | 0/12 (0.0%) | 23/603 (3.8%) | — |
| EN 絶滅危惧IB類 | Crenimugil heterocheilos ナガレフウライボラ | LC | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/57 (0.0%) | 6/366 (1.6%) | — |
| EN 絶滅危惧IB類 | Lates japonicus アカメ | VU | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 838 Mbp 56.0x | 18,353 286 kbp | 2 | 6 | 6 | 2/19 (10.5%) | 2/39 (5.1%) | 2023-06-29 |
| EN 絶滅危惧IB類 | Coreoperca kawamebari オヤニラミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 11 | 1/4 (25.0%) | 6/18 (33.3%) | — |
| EN 絶滅危惧IB類 | Sillaginops macrolepis アトクギス | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/113 (0.0%) | — |
| EN 絶滅危惧IB類 | Kuhlia munda トゲナガユゴイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/13 (0.0%) | — |
| EN 絶滅危惧IB類 | Cottus reinii カジカ小卵型 | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/157 (1.3%) | 6/352 (1.7%) | — |
| EN 絶滅危惧IB類 | Cottus sp. カジカ中卵型 | — | ✓ | — | — | — | No | — | — | — | 0 | 3 | 9 | 2/157 (1.3%) | 6/352 (1.7%) | — |
| EN 絶滅危惧IB類 | Trachidermus fasciatus ヤマノカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/1 (0.0%) | 6/352 (1.7%) | — |
| EN 絶滅危惧IB類 | Bostrychus sinensis ジャノメハゼ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 886 Mbp 447.8x | 348 28.3 Mbp | 2 | 2 | 15 | 1/4 (25.0%) | 12/282 (4.3%) | 2021-06-03 |
| EN 絶滅危惧IB類 | Giuris sp. 1 タメトモハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 15 | 0/55 (0.0%) | 12/282 (4.3%) | — |
| EN 絶滅危惧IB類 | Giuris sp. 2 ゴシキタメトモハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 15 | 0/55 (0.0%) | 12/282 (4.3%) | — |
| EN 絶滅危惧IB類 | Hypseleotris cyprinoides タナゴモドキ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 15 | 5/53 (9.4%) | 12/282 (4.3%) | — |
| EN 絶滅危惧IB類 | Boleophthalmus pectinirostris ムツゴロウ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 941 Mbp 100.0x | 3,222 835 kbp | 2 | 2 | 30 | 1/17 (5.9%) | 20/2517 (0.8%) | 2014-12-02 |
| EN 絶滅危惧IB類 | Cristatogobius lophius トサカハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/2 (0.0%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Gymnogobius cylindricus キセルハゼ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Gymnogobius scrobiculatus クボハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Gymnogobius sp. 1 ムサシノジュズカケハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Mugilogobius cavifrons ホホグロハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 30 | 1/32 (3.1%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Rhinogobius ogasawaraensis オガサワラヨシノボリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 30 | 1/126 (0.8%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Rhinogobius sp. YB キバラヨシノボリ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 30 | 1/126 (0.8%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Schismatogobius ampluvinculus シマエソハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/12 (0.0%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Schismatogobius roxasi エソハゼ | EN | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/12 (0.0%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Taenioides cirratus チワラスボ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 30 | 1/22 (4.5%) | 20/2517 (0.8%) | — |
| EN 絶滅危惧IB類 | Parioglossus rainfordi コビトハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/11 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Lethenteron japonicum カワヤツメ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 1.07 Gbp 87.8x | 4,710 1.60 Mbp | 2 | 3 | 16 | 2/10 (20.0%) | 8/476 (1.7%) | 2013-09-13 |
| VU 絶滅危惧II類 | Lethenteron sp. N. スナヤツメ北方種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 16 | 2/10 (20.0%) | 8/476 (1.7%) | — |
| VU 絶滅危惧II類 | Lethenteron sp. S. スナヤツメ南方種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 16 | 2/10 (20.0%) | 8/476 (1.7%) | — |
| VU 絶滅危惧II類 | Biwia zezera ゼゼラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/3 (0.0%) | 9/349 (2.6%) | — |
| VU 絶滅危惧II類 | Carassius buergeri subsp. 2 キンブナ | — | — | — | — | — | No | — | — | — | 0 | 12 | 79 | 3/46 (6.5%) | 51/2339 (2.2%) | — |
| VU 絶滅危惧II類 | Opsariichthys uncirostris uncirostris ハス | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 34 | 1/32 (3.1%) | 18/205 (8.8%) | — |
| VU 絶滅危惧II類 | Squalidus chankaensis biwae スゴモロコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/17 (0.0%) | 9/349 (2.6%) | — |
| VU 絶滅危惧II類 | Squalidus japonicus japonicus デメモロコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/17 (0.0%) | 9/349 (2.6%) | — |
| VU 絶滅危惧II類 | Cobitis matsubarae ヤマトシマドジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| VU 絶滅危惧II類 | Cobitis sp. BIWAE type D トサシマドジョウ | — | ✓ | — | — | — | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| VU 絶滅危惧II類 | Cobitis striata striata チュウガタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/233 (0.9%) | 5/454 (1.1%) | — |
| VU 絶滅危惧II類 | Niwaella delicata アジメドジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/9 (0.0%) | 5/454 (1.1%) | — |
| VU 絶滅危惧II類 | Tachysurus aurantiacus アリアケギバチ | NT | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 6 | 12 | 3/34 (8.8%) | 8/254 (3.1%) | — |
| VU 絶滅危惧II類 | Tachysurus tokiensis ギバチ | LC | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 6 | 12 | 3/34 (8.8%) | 8/254 (3.1%) | — |
| VU 絶滅危惧II類 | Liobagrus reinii アカザ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/24 (4.2%) | 1/51 (2.0%) | — |
| VU 絶滅危惧II類 | Salvelinus leucomaenis imbrius ゴギ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 59 | 4/59 (6.8%) | 22/678 (3.2%) | — |
| VU 絶滅危惧II類 | Salvelinus malma krascheninnikovi オショロコマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 59 | 4/59 (6.8%) | 22/678 (3.2%) | — |
| VU 絶滅危惧II類 | Salvelinus malma miyabei ミヤベイワナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 59 | 4/59 (6.8%) | 22/678 (3.2%) | — |
| VU 絶滅危惧II類 | Pungitius tymensis エゾトミヨ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 14 | 1/45 (2.2%) | 4/57 (7.0%) | — |
| VU 絶滅危惧II類 | Oryzias latipes ミナミメダカ | LC | ✓ | ✓ | ✓ | ✓ | Yes (33) | Chromosome, Reference | 734 Mbp 1.0x | 515 2.53 Mbp | 33 | 42 | 43 | 8/89 (9.0%) | 9/92 (9.8%) | 2007-04-26 |
| VU 絶滅危惧II類 | Oryzias sakaizumii キタノメダカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 42 | 43 | 8/89 (9.0%) | 9/92 (9.8%) | — |
| VU 絶滅危惧II類 | Acanthopagrus pacificus ナンヨウチヌ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 16 | 2/26 (7.7%) | 9/164 (5.5%) | — |
| VU 絶滅危惧II類 | Cottus kazika カマキリ（アユカケ） | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/157 (1.3%) | 6/352 (1.7%) | — |
| VU 絶滅危惧II類 | Odontobutis hikimius イシドンコ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/8 (0.0%) | 2/18 (11.1%) | — |
| VU 絶滅危惧II類 | Ophiocara porocephala ホシマダラハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/4 (0.0%) | 12/282 (4.3%) | — |
| VU 絶滅危惧II類 | Acanthogobius hasta ハゼクチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/7 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Acanthogobius insularis ミナミアシシロハゼ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/7 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Acentrogobius viridipunctatus キララハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/21 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Apocryptodon punctatus タビラクチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/4 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Caragobius urolepis アサガラハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/1 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Gymnogobius macrognathos エドハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Gymnogobius taranetzi シンジコハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Gymnogobius uchidai チクゼンハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Leucopsarion petersii シロウオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/1 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Luciogobius ryukyuensis ミナミヒメミミズハゼ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/42 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Mugilogobius mertoni ムジナハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 30 | 1/32 (3.1%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Odontamblyopus lacepedii ワラスボ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 963 Mbp 260.0x | 394 12.1 Mbp | 2 | 3 | 30 | 2/9 (22.2%) | 20/2517 (0.8%) | 2023-10-25 |
| VU 絶滅危惧II類 | Pandaka lidwilli マングローブゴマハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/5 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Pandaka sp. ゴマハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 30 | 0/5 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Parkraemeria saltator ギンポハゼ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/1 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Pseudogobius masago マサゴハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/55 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Sicyopterus lagocephalus ルリボウズハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/26 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Trypauchenopsis intermedia ヒゲワラスボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/5 (0.0%) | 20/2517 (0.8%) | — |
| VU 絶滅危惧II類 | Parioglossus palustris ボルネオハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/11 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Lethenteron kessleri シベリアヤツメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 16 | 2/10 (20.0%) | 8/476 (1.7%) | — |
| NT 準絶滅危惧 | Phoxinus perenurus sachalinensis ヤチウグイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 73 | 0/6 (0.0%) | 37/1258 (2.9%) | — |
| NT 準絶滅危惧 | Sarcocheilichthys variegatus variegatus カワヒガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/15 (0.0%) | 9/349 (2.6%) | — |
| NT 準絶滅危惧 | Tanakia lanceolata ヤリタナゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/8 (0.0%) | 1/109 (0.9%) | — |
| NT 準絶滅危惧 | Tanakia limbata アブラボテ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/8 (0.0%) | 1/109 (0.9%) | — |
| NT 準絶滅危惧 | Misgurnus anguillicaudatus ドジョウ | LC | ✓ | ✓ | ✓ | ✓ | Yes (6) | Chromosome, Reference | 1.10 Gbp 20.0x | 970 3.83 Mbp | 6 | 7 | 11 | 2/47 (4.3%) | 5/454 (1.1%) | 2023-01-09 |
| NT 準絶滅危惧 | Silurus lithophilus イワトコナマズ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 10 | 5/18 (27.8%) | 7/72 (9.7%) | — |
| NT 準絶滅危惧 | Hypomesus olidus イシカリワカサギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 10 | 2/6 (33.3%) | 5/14 (35.7%) | — |
| NT 準絶滅危惧 | Oncorhynchus masou ishikawae サツキマス（アマゴ） | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 2.42 Gbp 18.0x | 70,318 128 kbp | 2 | 20 | 59 | 7/42 (16.7%) | 22/678 (3.2%) | 2023-09-10 |
| NT 準絶滅危惧 | Oncorhynchus masou masou サクラマス（ヤマメ） | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.66 Gbp 33.0x | 21,300 2.47 Mbp | 2 | 20 | 59 | 7/42 (16.7%) | 22/678 (3.2%) | 2024-03-01 |
| NT 準絶滅危惧 | Oncorhynchus sp. ビワマス | — | ✓ | — | — | — | No | — | — | — | 0 | 20 | 59 | 7/42 (16.7%) | 22/678 (3.2%) | — |
| NT 準絶滅危惧 | Pungitius sp. 2 トミヨ属汽水型 | — | — | — | — | — | No | — | — | — | 0 | 5 | 14 | 1/45 (2.2%) | 4/57 (7.0%) | — |
| NT 準絶滅危惧 | Hyporhamphus intermedius クルメサヨリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/47 (0.0%) | 1/76 (1.3%) | — |
| NT 準絶滅危惧 | Zenarchopterus dunckeri コモチサヨリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/88 (1.1%) | — |
| NT 準絶滅危惧 | Cottus pollux カジカ大卵型 | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/157 (1.3%) | 6/352 (1.7%) | — |
| NT 準絶滅危惧 | Acentrogobius audax ニセツムギハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/4 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Acentrogobius caninus ホクロハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/21 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Acentrogobius suluensis ホホグロスジハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/21 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Amblygobius linki ワカケサラサハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/14 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Bunaka gyrinoides オウギハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/2 (0.0%) | 12/282 (4.3%) | — |
| NT 準絶滅危惧 | Eugnathogobius mindora カブキハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/7 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Eutaeniichthys gilli ヒモハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/1 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Glossogobius circumspectus スダレウロハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/74 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Gymnogobius castaneus ジュズカケハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Luciogobius fluvialis ナガレミミズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/42 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Luciogobius fonticola ユウスイミミズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/42 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Luciogobius pallidus イドミミズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/42 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Periophthalmus modestus トビハゼ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 854 Mbp 95.0x | 4,142 576 kbp | 1 | 5 | 30 | 2/19 (10.5%) | 20/2517 (0.8%) | 2021-08-13 |
| NT 準絶滅危惧 | Rhinogobius telma トウカイヨシノボリ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 30 | 1/126 (0.8%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Rhinogobius tyoni シマヒレヨシノボリ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 30 | 1/126 (0.8%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Silhouettea dotui シラヌイハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/4 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Silhouettea sp. ニセシラヌイハゼ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 30 | 0/4 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Tridentiger barbatus ショウキハゼ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/9 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Tridentiger nudicervicus シロチチブ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/9 (0.0%) | 20/2517 (0.8%) | — |
| NT 準絶滅危惧 | Gobitrichinotus radiocularis ナミノコハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Anguilla bicolor pacifica ニューギニアウナギ | — | ✓ | — | ✓ | ✓ | Yes (1) | Chromosome, Reference | 1.09 Gbp 92.0x | 404 16.9 Mbp | 1 | 19 | 19 | 8/22 (36.4%) | 8/22 (36.4%) | 2024-06-14 |
| DD 情報不足 | Carassius buergeri subsp. 1 ナガブナ | — | — | — | — | — | No | — | — | — | 0 | 12 | 79 | 3/46 (6.5%) | 51/2339 (2.2%) | — |
| DD 情報不足 | Phoxinus lagowskii yamamotis ヤマナカハヤ | — | — | — | — | — | No | — | — | — | 0 | 0 | 73 | 0/6 (0.0%) | 37/1258 (2.9%) | — |
| DD 情報不足 | Misgurnus sp. (Clade A) キタドジョウ | — | — | — | — | — | No | — | — | — | 0 | 7 | 11 | 2/47 (4.3%) | 5/454 (1.1%) | — |
| DD 情報不足 | Misgurnus sp. IR シノビドジョウ | — | ✓ | — | — | — | No | — | — | — | 0 | 7 | 11 | 2/47 (4.3%) | 5/454 (1.1%) | — |
| DD 情報不足 | Misgurnus sp. OK ヒョウモンドジョウ | — | ✓ | — | — | — | No | — | — | — | 0 | 7 | 11 | 2/47 (4.3%) | 5/454 (1.1%) | — |
| DD 情報不足 | Salvelinus leucomaenis pluvius ニッコウイワナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 59 | 4/59 (6.8%) | 22/678 (3.2%) | — |
| DD 情報不足 | Chelon subviridis アンピンボラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 9 | 1/137 (0.7%) | 6/366 (1.6%) | — |
| DD 情報不足 | Ellochelon vaigiensis オニボラ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 647 Mbp 60.0x | 137,715 24.2 kbp | 1 | 1 | 9 | 1/4 (25.0%) | 6/366 (1.6%) | 2024-08-08 |
| DD 情報不足 | Moolgarda engeli モンナシボラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/58 (0.0%) | 6/366 (1.6%) | — |
| DD 情報不足 | Moolgarda pedaraki カマヒレボラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/8 (0.0%) | 6/366 (1.6%) | — |
| DD 情報不足 | Atherinomorus duodecimalis ネッタイイソイワシ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 11 | 1/33 (3.0%) | 9/118 (7.6%) | — |
| DD 情報不足 | Hypoatherina temminckii ミナミギンイソイワシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/17 (0.0%) | 9/118 (7.6%) | — |
| DD 情報不足 | Ambassis interrupta ナンヨウタカサゴイシモチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/46 (2.2%) | 2/71 (2.8%) | — |
| DD 情報不足 | Ambassis macracanthus ハナダカタカサゴイシモチ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/46 (2.2%) | 2/71 (2.8%) | — |
| DD 情報不足 | Epinephelus bontoides シラヌイハタ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 29 | 9/133 (6.8%) | 23/682 (3.4%) | — |
| DD 情報不足 | Fibramia lateralis ワキイシモチ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.16 Gbp 60.0x | 464,460 4.68 kbp | 1 | 1 | 17 | 1/3 (33.3%) | 16/583 (2.7%) | 2024-08-15 |
| DD 情報不足 | Pseudamia amblyuroptera ヒルギヌメリテンジクダイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 17 | 1/6 (16.7%) | 16/583 (2.7%) | — |
| DD 情報不足 | Plectorhinchus albovittatus ダイダイコショウダイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/31 (0.0%) | 1/185 (0.5%) | — |
| DD 情報不足 | Omobranchus elongatus ゴマクモギンポ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/45 (0.0%) | 4/459 (0.9%) | — |
| DD 情報不足 | Pseudocalliurichthys ikedai ナリタイトヒキヌメリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/1 (0.0%) | 3/129 (2.3%) | — |
| DD 情報不足 | Belobranchus belobranchus エリトゲハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/3 (0.0%) | 12/282 (4.3%) | — |
| DD 情報不足 | Glossogobius sp. フタゴハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 30 | 0/74 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Gymnogobius mororanus ヘビハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Luciogobius dormitoris ネムリミミズハゼ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/42 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Mugilogobius fuscus フタホシハゼ | LC | — | ✓ | — | ✓ | No | — | — | — | 0 | 3 | 30 | 1/32 (3.1%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Pseudogobius gastrospilos コクチスナゴハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/55 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Redigobius balteatus タスキヒナハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/10 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Rhinogobius biwaensis ビワヨシノボリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 30 | 1/126 (0.8%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Sicyopus auxilimentus ヒノコロモボウズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/9 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Stenogobius ophthalmoporus ドウケハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/12 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Stiphodon multisquamus トラフボウズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/29 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Stiphodon niraikanaiensis ニライカナイボウズハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/29 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Stiphodon surrufus カキイロヒメボウズハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/29 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Kraemeria tongaensis トンガスナハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/2 (0.0%) | — |
| DD 情報不足 | Parioglossus caeruleolineatus クジャクハゼ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/11 (0.0%) | 20/2517 (0.8%) | — |
| DD 情報不足 | Parioglossus lineatus マイコハゼ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/11 (0.0%) | 20/2517 (0.8%) | — |
| LP 絶滅のおそれの ある地域個体群 | Entosphenus tridentatus 栃木県のミツバヤツメ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 928 Mbp 43.0x | 204,728 19.6 kbp | 2 | 2 | 16 | 1/7 (14.3%) | 8/476 (1.7%) | 2020-10-05 |
| LP 絶滅のおそれの ある地域個体群 | Clupea pallasii 本州の太平洋側湖沼系群のニシン | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 35 | 1/4 (25.0%) | 18/449 (4.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Cyprinus carpio 琵琶湖のコイ在来型 | VU | ✓ | ✓ | ✓ | ✓ | Yes (9) | Chromosome, Reference | 1.68 Gbp 184.8x | 19,837 1.56 Mbp | 9 | 9 | 79 | 1/16 (6.2%) | 51/2339 (2.2%) | 2014-11-03 |
| LP 絶滅のおそれの ある地域個体群 | Tribolodon brandtii brandtii 本州のジュウサンウグイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 73 | 0/8 (0.0%) | 37/1258 (2.9%) | — |
| LP 絶滅のおそれの ある地域個体群 | Tribolodon sachalinensis 東北地方のエゾウグイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 73 | 0/8 (0.0%) | 37/1258 (2.9%) | — |
| LP 絶滅のおそれの ある地域個体群 | Spirinchus lanceolatus 襟裳岬以西のシシャモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/3 (0.0%) | 5/14 (35.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Salvelinus leucomaenis japonicus 紀伊半島のヤマトイワナ（キリクチ） | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 5 | 59 | 4/59 (6.8%) | 22/678 (3.2%) | — |
| LP 絶滅のおそれの ある地域個体群 | Gasterosteus aculeatus subsp. 1 福島県以南の太平洋系陸封型イトヨ | — | — | — | — | — | No | — | — | — | 7 | 8 | 14 | 2/9 (22.2%) | 4/57 (7.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Gasterosteus nipponicus 本州のニホンイトヨ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 600 Mbp 17.8x | 3,718 545 kbp | 1 | 8 | 14 | 2/9 (22.2%) | 4/57 (7.0%) | 2020-07-29 |
| LP 絶滅のおそれの ある地域個体群 | Pungitius sp. 1 本州のトミヨ属淡水型 | — | — | — | — | — | No | — | — | — | 0 | 5 | 14 | 1/45 (2.2%) | 4/57 (7.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Lateolabrax japonicus 有明海のスズキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 1/8 (12.5%) | 1/8 (12.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Cottus hangiongensis 東北・北陸地方のカンキョウカジカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/157 (1.3%) | 6/352 (1.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Cottus nozawae 東北地方のハナカジカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/157 (1.3%) | 6/352 (1.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Gymnogobius petschiliensis 北海道南部・東北地方のスミウキゴリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/24 (0.0%) | 20/2517 (0.8%) | — |
| LP 絶滅のおそれの ある地域個体群 | Takifugu alboplumbeus 沖縄島のクサフグ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 12 | 4/42 (9.5%) | 8/203 (3.9%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Ishikawatrechus intermedius カドタメクラチビゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Rakantrechus elegans コゾノメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Prodaticus satoi スジゲンゴロウ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/44 (0.0%) | 1/2948 (0.0%) | — |
| EX 絶滅 | Macroplea japana キイロネクイハムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 96 | 0/6 (0.0%) | 53/6796 (0.8%) | — |
| CR 絶滅危惧IA類 | Erythromma humerale アカメイトトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/4 (0.0%) | 4/883 (0.5%) | — |
| CR 絶滅危惧IA類 | Indolestes boninensis オガサワラアオイトトンボ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/85 (0.0%) | — |
| CR 絶滅危惧IA類 | Hemicordulia ogasawarensis オガサワラトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/176 (0.0%) | — |
| CR 絶滅危惧IA類 | Libellula angelina ベッコウトンボ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/21 (0.0%) | 5/628 (0.8%) | — |
| CR 絶滅危惧IA類 | Orthetrum poecilops ミヤジマトンボ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/35 (0.0%) | 5/628 (0.8%) | — |
| CR 絶滅危惧IA類 | Celes akitanus アカハネバッタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/3 (0.0%) | 8/1841 (0.4%) | — |
| CR 絶滅危惧IA類 | Ogasawaracris gloriosus マボロシオオバッタ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Oxya ogasawarensis オガサワライナゴ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/17 (0.0%) | 8/1841 (0.4%) | — |
| CR 絶滅危惧IA類 | Platypleura albivannata イシガキニイニイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/63 (0.0%) | 3/1186 (0.3%) | — |
| CR 絶滅危惧IA類 | Diplonychus rusticus タイワンコオイムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/232 (0.4%) | — |
| CR 絶滅危惧IA類 | Lethocerus indicus タイワンタガメ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 427 Mbp 60.0x | 502 5.90 Mbp | 1 | 1 | 1 | 1/16 (6.2%) | 1/232 (0.4%) | 2021-09-01 |
| CR 絶滅危惧IA類 | Laccotrephes grossus タイワンタイコウチ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/53 (1.9%) | — |
| CR 絶滅危惧IA類 | Aphelocheirus kawamurae カワムラナベブタムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/16 (0.0%) | — |
| CR 絶滅危惧IA類 | Carabus arrowianus kirimurai ミカワオサムシ御浜町亜種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 34 | 1/430 (0.2%) | 20/6394 (0.3%) | — |
| CR 絶滅危惧IA類 | Chlaenius praefectus アオヘリアオゴミムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 34 | 0/46 (0.0%) | 20/6394 (0.3%) | — |
| CR 絶滅危惧IA類 | Cylindera bonina オガサワラハンミョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 34 | 0/67 (0.0%) | 20/6394 (0.3%) | — |
| CR 絶滅危惧IA類 | Oodes virens オオヒラタトックリゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 34 | 0/5 (0.0%) | 20/6394 (0.3%) | — |
| CR 絶滅危惧IA類 | Pterostichus yokohamae ヨコハマナガゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 4 | 34 | 2/289 (0.7%) | 20/6394 (0.3%) | — |
| CR 絶滅危惧IA類 | Copelatus parallelus コセスジゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/468 (0.0%) | 1/2948 (0.0%) | — |
| CR 絶滅危惧IA類 | Cybister lewisianus マルコガタノゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/40 (0.0%) | 1/2948 (0.0%) | — |
| CR 絶滅危惧IA類 | Cybister limbatus フチトリゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/40 (0.0%) | 1/2948 (0.0%) | — |
| CR 絶滅危惧IA類 | Dytiscus sharpi シャープゲンゴロウモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/29 (0.0%) | 1/2948 (0.0%) | — |
| CR 絶滅危惧IA類 | Hydaticus thermonectoides マダラシマゲンゴロウ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/30 (0.0%) | 1/2948 (0.0%) | — |
| CR 絶滅危惧IA類 | Hyphydrus orientalis ニセコケシゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2948 (0.0%) | — |
| CR 絶滅危惧IA類 | Rhantaticus congestus マダラゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/1 (0.0%) | 1/2948 (0.0%) | — |
| CR 絶滅危惧IA類 | Gyrinus ryukyuensis リュウキュウヒメミズスマシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/283 (0.0%) | — |
| CR 絶滅危惧IA類 | Quedius kiuchii リュウノイワヤツヤムネハネカクシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 66 | 0/288 (0.0%) | 49/6921 (0.7%) | — |
| CR 絶滅危惧IA類 | Neolucanus insulicola donan ヨナグニマルバネクワガタ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/24 (0.0%) | 4/382 (1.0%) | — |
| CR 絶滅危惧IA類 | Oryctes hisamatsui ヒサマツサイカブト | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 58 | 2/14 (14.3%) | 39/4672 (0.8%) | — |
| CR 絶滅危惧IA類 | Chrysobothris boninensis suzukii オガサワラムツボシタマムシ母島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/34 (0.0%) | 4/628 (0.6%) | — |
| CR 絶滅危惧IA類 | Tamamushia virida fujitai ツマベニタマムシ聟島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Luciola owadai クメジマボタル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/2 (0.0%) | 7/620 (1.1%) | — |
| CR 絶滅危惧IA類 | Glipa asahinai キンモンオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Glipa kurosawai クロサワオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Glipa ogasawarensis オガサワラオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Hoshihananomia katoi boninensis ニセキボシハナノミ小笠原亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Hoshihananomia kusuii クスイキボシハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Agapanthia japonica フサヒゲルリカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/14 (0.0%) | 17/3045 (0.6%) | — |
| CR 絶滅危惧IA類 | Boninella anoplos ケズネオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Boninella hirsuta アラゲオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Boninella igai ヒメオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Boninella satoi masatakai サトウオガサワラカミキリ母島亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Bonipogonius fujitai ヒゲシロアラゲカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Phytoecia coeruleomicans アオキクスイカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/18 (0.0%) | 17/3045 (0.6%) | — |
| CR 絶滅危惧IA類 | Xylotrechus takakuwai ミイロトラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/60 (0.0%) | 17/3045 (0.6%) | — |
| CR 絶滅危惧IA類 | Donacia frontalis アオノネクイハムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 96 | 0/62 (0.0%) | 53/6796 (0.8%) | — |
| CR 絶滅危惧IA類 | Ogasawarazo daitoensis ダイトウスジヒメカタゾウムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Ogasawarazo rugosicephalus hahajimaensis ヒメカタゾウムシ母島亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Orussus boninensis オガサワラヤドリキバチ | — | — | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/7 (14.3%) | 1/12 (8.3%) | — |
| CR 絶滅危惧IA類 | Chrysis boninensis オガサワラセイボウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/214 (0.0%) | 1/485 (0.2%) | — |
| CR 絶滅危惧IA類 | Aphaenogaster gamagumayaa ガマアシナガアリ | — | — | — | ✓ | — | No | — | — | — | 0 | 7 | 120 | 6/280 (2.1%) | 90/16980 (0.5%) | — |
| CR 絶滅危惧IA類 | Pison tosawai チチジマピソン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/20 (0.0%) | 11/1454 (0.8%) | — |
| CR 絶滅危惧IA類 | Anopheles yatsushiroensis ヤツシロハマダラカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 97 | 139 | 41/1138 (3.6%) | 59/3728 (1.6%) | — |
| CR 絶滅危惧IA類 | Simulium yonakuniense ヨナクニウォレスブユ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1848 (0.0%) | 0/2193 (0.0%) | — |
| CR 絶滅危惧IA類 | Carterocephalus palaemon akaishianus タカネキマダラセセリ赤石山脈亜種 | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 3 | 456 | 2/15 (13.3%) | 399/2855 (14.0%) | — |
| CR 絶滅危惧IA類 | Pyrgus malvae unomasahiroi ヒメチャマダラセセリ | — | ✓ | ✓ | — | — | No | — | — | — | 2 | 8 | 456 | 4/40 (10.0%) | 399/2855 (14.0%) | — |
| CR 絶滅危惧IA類 | Pieris canidia kaolicola タイワンモンシロチョウ対馬・朝鮮半島亜種 | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 16 | 61 | 6/56 (10.7%) | 28/904 (3.1%) | — |
| CR 絶滅危惧IA類 | Antigius butleri kurinodakensis ウスイロオナガシジミ鹿児島県栗野岳亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 52 | 0/2 (0.0%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Celastrina ogasawaraensis オガサワラシジミ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 2 | 52 | 1/19 (5.3%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Everes lacturnus lacturnus タイワンツバメシジミ名義タイプ亜種, 琉球亜種 | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 52 | 0/16 (0.0%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Japonica onoi mizobei カシワアカシジミ（キタアカシジミ）冠高原亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 52 | 0/5 (0.0%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Phengaris teleius kazamoto ゴマシジミ関東・中部亜種 | — | ✓ | — | — | — | No | — | — | — | 0 | 3 | 52 | 2/11 (18.2%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Pithecops fulgens tsushimanus ツシマウラボシシジミ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 52 | 0/4 (0.0%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Plebejus subsolanus iburiensis アサマシジミ北海道亜種 | — | — | — | — | — | No | — | — | — | 0 | 6 | 52 | 4/65 (6.2%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Shijimia moorei moorei ゴイシツバメシジミ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 52 | 0/1 (0.0%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Shijimiaeoides divinus barine オオルリシジミ本州亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 52 | 0/1 (0.0%) | 27/2641 (1.0%) | — |
| CR 絶滅危惧IA類 | Coenonympha oedippus annulifer ヒメヒカゲ長野県・群馬県亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 4 | 618 | 3/36 (8.3%) | 153/5201 (2.9%) | — |
| CR 絶滅危惧IA類 | Fabriciana nerippe オオウラギンヒョウモン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 618 | 1/10 (10.0%) | 153/5201 (2.9%) | — |
| CR 絶滅危惧IA類 | Melitaea protomedia ウスイロヒョウモンモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 618 | 2/137 (1.5%) | 153/5201 (2.9%) | — |
| CR 絶滅危惧IA類 | Melitaea scotosia ヒョウモンモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 618 | 2/137 (1.5%) | 153/5201 (2.9%) | — |
| CR 絶滅危惧IA類 | Oeneis norna sugitanii タカネヒカゲ八ヶ岳亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 2 | 618 | 1/39 (2.6%) | 153/5201 (2.9%) | — |
| CR 絶滅危惧IA類 | Sebastosema bubonaria カバシタムクゲエダシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Oxytrypia orbiculosa ミヨタトラヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Sideridis incommoda アサギリヨトウ（キシダムラサキヨトウ） | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 322 | 0/18 (0.0%) | 154/7125 (2.2%) | — |
| CR 絶滅危惧IA類 | Sinocharis korbae ノシメコヤガ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 322 | 0/1 (0.0%) | 154/7125 (2.2%) | — |
| EN 絶滅危惧IB類 | Mortonagrion hirosei ヒヌマイトトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/7 (0.0%) | 4/883 (0.5%) | — |
| EN 絶滅危惧IB類 | Paracercion plagiosum オオセスジイトトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/9 (0.0%) | 4/883 (0.5%) | — |
| EN 絶滅危惧IB類 | Copera tokyoensis オオモノサシトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/3 (0.0%) | 1/115 (0.9%) | — |
| EN 絶滅危惧IB類 | Lestes japonicus コバネアオイトトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/58 (0.0%) | 0/85 (0.0%) | — |
| EN 絶滅危惧IB類 | Rhinocypha ogasawarensis ハナダカトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/11 (9.1%) | 1/51 (2.0%) | — |
| EN 絶滅危惧IB類 | Anaciaeschna jaspidea トビイロヤンマ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/251 (0.0%) | — |
| EN 絶滅危惧IB類 | Rhyothemis severini ハネナガチョウトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/7 (0.0%) | 5/628 (0.8%) | — |
| EN 絶滅危惧IB類 | Sympetrum flaveolum flaveolum エゾアカネ | — | — | — | — | — | No | — | — | — | 0 | 4 | 7 | 2/110 (1.8%) | 5/628 (0.8%) | — |
| EN 絶滅危惧IB類 | Sympetrum maculatum マダラナニワトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 7 | 2/110 (1.8%) | 5/628 (0.8%) | — |
| EN 絶滅危惧IB類 | Sympetrum uniforme オオキトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 7 | 2/110 (1.8%) | 5/628 (0.8%) | — |
| EN 絶滅危惧IB類 | Zyxomma obtusum コフキオオメトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 5/628 (0.8%) | — |
| EN 絶滅危惧IB類 | Galloisiana notabilis イシイムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/27 (0.0%) | 0/170 (0.0%) | — |
| EN 絶滅危惧IB類 | Ilyocoris cimicoides exclamationis コバンムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/261 (0.0%) | — |
| EN 絶滅危惧IB類 | Abroscelis anchoralis イカリモンハンミョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 34 | 0/1 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Awatrechus hygrobius リュウノメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Bembidion nakamurai サツマキバナガミズギワゴミムシ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 2 | 34 | 2/507 (0.4%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Carabus kolbei hanatanii アイヌキンオサムシ利尻島亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 34 | 1/430 (0.2%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Chaetodera laetescripta カワラハンミョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 34 | 0/3 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Chaetotrechiama procerus ケバネメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Chlaenius ikedai オガサワラアオゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 34 | 0/46 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Cicindela lewisi ルイスハンミョウ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 34 | 0/312 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Colpodes laetus オガサワラモリヒラタゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 34 | 0/10 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Colpodes yamaguchii ハハジマモリヒラタゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 34 | 0/10 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Drypta fulveola キイロホソゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 34 | 0/3 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Elaphrus punctatus コハンミョウモドキ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 34 | 0/15 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Elaphrus sugai ワタラセハンミョウモドキ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 34 | 0/15 (0.0%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Eochlaenius suvorovi チビアオゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Haplochlaenius insularis アマミスジアオゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Nebria livida angulata キベリマルクビゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 34 | 3/198 (1.5%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Nebria pulcherrima フタモンマルクビゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 5 | 34 | 3/198 (1.5%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Pterostichus plesiomorphs アマミナガゴミムシ | — | — | — | — | — | No | — | — | — | 0 | 4 | 34 | 2/289 (0.7%) | 20/6394 (0.3%) | — |
| EN 絶滅危惧IB類 | Rakantrechus lallum ツヅラセメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Rakantrechus mirabilis ウスケメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Stygiotrechus kadanus タカモリメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Stygiotrechus kitayamai キタヤマメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Suzuka masuzoi マスゾウメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Trechiama abcuma アブクマナガチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Trechiama morii カダメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Trechiama nakaoi ナカオメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Trechiama oopterus スリカミメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Haliplus kamiyai カミヤコガシラミズムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/56 (0.0%) | 0/81 (0.0%) | — |
| EN 絶滅危惧IB類 | Neohydrocoptus bivittis キボシチビコツブゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/123 (0.0%) | — |
| EN 絶滅危惧IB類 | Phreatodytes elongatus ギフムカシゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| EN 絶滅危惧IB類 | Phreatodytes latiusculus カガミムカシゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| EN 絶滅危惧IB類 | Phreatodytes sublimbatus トサムカシゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| EN 絶滅危惧IB類 | Acilius kishii ヤシャゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/14 (0.0%) | 1/2948 (0.0%) | — |
| EN 絶滅危惧IB類 | Hydaticus pacificus conspersus オオイチモンジシマゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/30 (0.0%) | 1/2948 (0.0%) | — |
| EN 絶滅危惧IB類 | Laccophilus vagelineatus キタノツブゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/60 (0.0%) | 1/2948 (0.0%) | — |
| EN 絶滅危惧IB類 | Morimotoa gigantea オオメクラゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Morimotoa morimotoi トサメクラゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Gyrinus curtus コミズスマシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/283 (0.0%) | — |
| EN 絶滅危惧IB類 | Gyrinus gestroi ヒメミズスマシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/283 (0.0%) | — |
| EN 絶滅危惧IB類 | Hydrochus aequalis ホソガムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/36 (2.8%) | 1/36 (2.8%) | — |
| EN 絶滅危惧IB類 | Helophorus auriculatus セスジガムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/51 (0.0%) | 0/53 (0.0%) | — |
| EN 絶滅危惧IB類 | Laccobius bedeli シジミガムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/34 (0.0%) | 6/1280 (0.5%) | — |
| EN 絶滅危惧IB類 | Liparocephalus tokunagai オオズウミハネカクシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 66 | 0/3 (0.0%) | 49/6921 (0.7%) | — |
| EN 絶滅危惧IB類 | Neolucanus protogenetivus hamaii ウケジママルバネクワガタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/24 (0.0%) | 4/382 (1.0%) | — |
| EN 絶滅危惧IB類 | Cheirotonus jambar ヤンバルテナガコガネ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 58 | 0/3 (0.0%) | 39/4672 (0.8%) | — |
| EN 絶滅危惧IB類 | Graphelmis shirahatai アヤスジミゾドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/12 (0.0%) | 1/522 (0.2%) | — |
| EN 絶滅危惧IB類 | Optioservus hagai ハガマルヒメドロムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/30 (0.0%) | 1/522 (0.2%) | — |
| EN 絶滅危惧IB類 | Zaitzevia rufa アカツヤドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/15 (0.0%) | 1/522 (0.2%) | — |
| EN 絶滅危惧IB類 | Lucidina okadai コクロオバボタル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/7 (0.0%) | 7/620 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhagophthalmus ohbai イリオモテボタル | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 1 | 1/9 (11.1%) | 1/22 (4.5%) | — |
| EN 絶滅危惧IB類 | Tomoxia relicta オガサワラモンハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/431 (0.0%) | — |
| EN 絶滅危惧IB類 | Variimorda inomatai オガサワラキンオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| EN 絶滅危惧IB類 | Variimorda maiae shoui マイキンオビハナノミ母島亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| EN 絶滅危惧IB類 | Boninella karubei ムコジマオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Chlorophorus kusamai ムコジマトラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/27 (0.0%) | 17/3045 (0.6%) | — |
| EN 絶滅危惧IB類 | Chlorophorus masatakai ムコジマキイロトラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/27 (0.0%) | 17/3045 (0.6%) | — |
| EN 絶滅危惧IB類 | Peblephaeus nobuoi ノブオフトカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/3 (0.0%) | 17/3045 (0.6%) | — |
| EN 絶滅危惧IB類 | Pseudiphra bicolor nigripennis フタモンアメイロカミキリ母島列島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/1 (0.0%) | 17/3045 (0.6%) | — |
| EN 絶滅危惧IB類 | Stenygrinum quadrinotatum ヨツボシカミキリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/1 (0.0%) | 17/3045 (0.6%) | — |
| EN 絶滅危惧IB類 | Simulium satsumense サツマツノマユブユ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1848 (0.0%) | 0/2193 (0.0%) | — |
| EN 絶滅危惧IB類 | Symmerus akikoae ヒメケヅメカ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/34 (2.9%) | 5/6774 (0.1%) | — |
| EN 絶滅危惧IB類 | Hydrotaea glabricula イソメマトイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 28 | 2/62 (3.2%) | 13/5669 (0.2%) | — |
| EN 絶滅危惧IB類 | Sarcophaga yonahaensis ヨナハニクバエ | — | — | — | ✓ | — | No | — | — | — | 0 | 13 | 18 | 7/449 (1.6%) | 11/1501 (0.7%) | — |
| EN 絶滅危惧IB類 | Scalarignathia montis ミスジコスカシバ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Aeromachus inachus inachus ホシチャバネセセリ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 1 | 456 | 1/10 (10.0%) | 399/2855 (14.0%) | — |
| EN 絶滅危惧IB類 | Hesperia florinda florinda アカセセリ | — | — | — | — | — | No | — | — | — | 0 | 3 | 456 | 2/29 (6.9%) | 399/2855 (14.0%) | — |
| EN 絶滅危惧IB類 | Parnara ogasawarensis オガサワラセセリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 456 | 1/11 (9.1%) | 399/2855 (14.0%) | — |
| EN 絶滅危惧IB類 | Pyrgus maculatus maculatus チャマダラセセリ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 8 | 456 | 4/40 (10.0%) | 399/2855 (14.0%) | — |
| EN 絶滅危惧IB類 | Aporia hippia japonica ミヤマシロチョウ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 2 | 61 | 1/39 (2.6%) | 28/904 (3.1%) | — |
| EN 絶滅危惧IB類 | Eurema laeta betheseba ツマグロキチョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 61 | 2/48 (4.2%) | 28/904 (3.1%) | — |
| EN 絶滅危惧IB類 | Gonepteryx maxima maxima ヤマキチョウ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 61 | 0/12 (0.0%) | 28/904 (3.1%) | — |
| EN 絶滅危惧IB類 | Leptidea amurensis ヒメシロチョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 61 | 3/10 (30.0%) | 28/904 (3.1%) | — |
| EN 絶滅危惧IB類 | Everes lacturnus kawaii タイワンツバメシジミ日本本土亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 52 | 0/16 (0.0%) | 27/2641 (1.0%) | — |
| EN 絶滅危惧IB類 | Niphanda fusca クロシジミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 52 | 0/3 (0.0%) | 27/2641 (1.0%) | — |
| EN 絶滅危惧IB類 | Phengaris teleius daisensis ゴマシジミ中国地方・九州亜種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 52 | 2/11 (18.2%) | 27/2641 (1.0%) | — |
| EN 絶滅危惧IB類 | Plebejus argyrognomon praeterinsularis ミヤマシジミ | — | ✓ | — | — | — | No | — | — | — | 0 | 6 | 52 | 4/65 (6.2%) | 27/2641 (1.0%) | — |
| EN 絶滅危惧IB類 | Plebejus subsolanus yaginus アサマシジミ本州亜種 | — | — | — | — | — | No | — | — | — | 0 | 6 | 52 | 4/65 (6.2%) | 27/2641 (1.0%) | — |
| EN 絶滅危惧IB類 | Shijimiaeoides divinus asonis オオルリシジミ九州亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 52 | 0/1 (0.0%) | 27/2641 (1.0%) | — |
| EN 絶滅危惧IB類 | Zizina emelina シルビアシジミ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 52 | 0/3 (0.0%) | 27/2641 (1.0%) | — |
| EN 絶滅危惧IB類 | Coenonympha oedippus arothius ヒメヒカゲ本州中部・近畿・中国地方亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 618 | 3/36 (8.3%) | 153/5201 (2.9%) | — |
| EN 絶滅危惧IB類 | Lethe marginalis クロヒカゲモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 618 | 0/38 (0.0%) | 153/5201 (2.9%) | — |
| EN 絶滅危惧IB類 | Melitaea ambigua niphona コヒョウモンモドキ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 8 | 618 | 4/13 (30.8%) | 153/5201 (2.9%) | — |
| EN 絶滅危惧IB類 | Brabira kasaii チャホシホソバナミシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 205 | 0/1 (0.0%) | 103/11789 (0.9%) | — |
| EN 絶滅危惧IB類 | Epirrhoe hastulata echigoensis ヒトスジシロナミシャク本州亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 205 | 2/15 (13.3%) | 103/11789 (0.9%) | — |
| EN 絶滅危惧IB類 | Heterophleps endoi サキシマウスクモナミシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 205 | 0/4 (0.0%) | 103/11789 (0.9%) | — |
| EN 絶滅危惧IB類 | Isturgia arenacearia ソトオビエダシャク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 205 | 0/22 (0.0%) | 103/11789 (0.9%) | — |
| EN 絶滅危惧IB類 | Chersotis deplanata ヒメカクモンヤガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 322 | 0/14 (0.0%) | 154/7125 (2.2%) | — |
| EN 絶滅危惧IB類 | Condica illustrata ヘリグロヒメヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 322 | 0/55 (0.0%) | 154/7125 (2.2%) | — |
| EN 絶滅危惧IB類 | Cymatophoropsis trimaculata ミツモンケンモン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 77 | 0/3 (0.0%) | 37/8291 (0.4%) | — |
| EN 絶滅危惧IB類 | Dasypolia fani オガサワラヒゲヨトウ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 322 | 1/6 (16.7%) | 154/7125 (2.2%) | — |
| EN 絶滅危惧IB類 | Lacanobia aliena オイワケクロヨトウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 4 | 322 | 2/23 (8.7%) | 154/7125 (2.2%) | — |
| EN 絶滅危惧IB類 | Leucapamea hikosana クロコシロヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 322 | 0/1 (0.0%) | 154/7125 (2.2%) | — |
| EN 絶滅危惧IB類 | Paraphyllophila confusa ミスズコヤガ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Staurophora celsia コンゴウミドリヨトウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 322 | 0/1 (0.0%) | 154/7125 (2.2%) | — |
| VU 絶滅危惧II類 | Coenagrion hylas カラフトイトトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/27 (0.0%) | 4/883 (0.5%) | — |
| VU 絶滅危惧II類 | Ischnura ezoin オガサワライトトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 9 | 2/99 (2.0%) | 4/883 (0.5%) | — |
| VU 絶滅危惧II類 | Pseudagrion microcephalum アオナガイトトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/55 (0.0%) | 4/883 (0.5%) | — |
| VU 絶滅危惧II類 | Stylurus annulatus オオサ | |||||||||||||||