Genome sequence data availability
for the Japanese Red Lists
Updated on 2025-03-03
This page shows all entries from the list. This table is also available in TSV format.
This page shows all entries from the list. This table is also available in TSV format.
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Pteropus loochoensis オキナワオオコウモリ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 4/59 (6.8%) | 13/186 (7.0%) | — |
| EX 絶滅 | Rhinolophus pumilus miyakonis ミヤココキクガシラコウモリ | — | — | — | — | — | No | — | — | — | 0 | 19 | 19 | 8/166 (4.8%) | 8/170 (4.7%) | — |
| EX 絶滅 | Pipistrellus sturdeei オガサワラアブラコウモリ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 54 | 6/74 (8.1%) | 32/884 (3.6%) | — |
| EX 絶滅 | Canis lupus hattai エゾオオカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 34 | 35 | 56 | 2/29 (6.9%) | 12/66 (18.2%) | — |
| EX 絶滅 | Canis lupus hodophilax ニホンオオカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 34 | 35 | 56 | 2/29 (6.9%) | 12/66 (18.2%) | — |
| EX 絶滅 | Lutra lutra nippon ニホンカワウソ（本州以南亜種） | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 70 | 1/4 (25.0%) | 21/70 (30.0%) | — |
| EX 絶滅 | Lutra lutra whiteleyi ニホンカワウソ（北海道亜種） | — | — | — | ✓ | ✓ | No | — | — | — | 2 | 2 | 70 | 1/4 (25.0%) | 21/70 (30.0%) | — |
| CR 絶滅危惧IA類 | Mogera uchidai センカクモグラ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/10 (0.0%) | 8/106 (7.5%) | — |
| CR 絶滅危惧IA類 | Pteropus dasymallus daitoensis ダイトウオオコウモリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 4/59 (6.8%) | 13/186 (7.0%) | — |
| CR 絶滅危惧IA類 | Pteropus dasymallus dasymallus エラブオオコウモリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 4/59 (6.8%) | 13/186 (7.0%) | — |
| CR 絶滅危惧IA類 | Myotis formosus クロアカコウモリ | NT | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 19 | 54 | 13/373 (3.5%) | 32/884 (3.6%) | — |
| CR 絶滅危惧IA類 | Myotis yanbarensis ヤンバルホオヒゲコウモリ | CR | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 19 | 54 | 13/373 (3.5%) | 32/884 (3.6%) | — |
| CR 絶滅危惧IA類 | Apodemus agrarius セスジネズミ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.61 Gbp 70.0x | 242 35.2 Mbp | 1 | 6 | 148 | 3/36 (8.3%) | 38/1182 (3.2%) | 2024-04-12 |
| CR 絶滅危惧IA類 | Tokudaia muenninki オキナワトゲネズミ | CR | ✓ | ✓ | ✓ | ✓ | Yes (3) | Scaffold, Reference | 3.67 Gbp 100.0x | 53 138 Mbp | 3 | 6 | 148 | 3/3 (100.0%) | 38/1182 (3.2%) | 2023-09-08 |
| CR 絶滅危惧IA類 | Prionailurus bengalensis euptilurus ツシマヤマネコ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 2.42 Gbp 100.0x | 319,281 20.4 kbp | 3 | 7 | 61 | 3/5 (60.0%) | 22/55 (40.0%) | 2020-09-15 |
| CR 絶滅危惧IA類 | Prionailurus bengalensis iriomotensis イリオモテヤマネコ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.38 Gbp 87.0x | 194,533 27.8 kbp | 1 | 7 | 61 | 3/5 (60.0%) | 22/55 (40.0%) | 2021-03-31 |
| CR 絶滅危惧IA類 | Enhydra lutris ラッコ | EN | ✓ | ✓ | ✓ | ✓ | Yes (4) | Scaffold, Reference | 2.46 Gbp 110.0x | 29,591 245 kbp | 4 | 4 | 70 | 1/1 (100.0%) | 21/70 (30.0%) | 2017-09-11 |
| CR 絶滅危惧IA類 | Zalophus japonicus ニホンアシカ | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 14 | 1/3 (33.3%) | 5/16 (31.2%) | — |
| CR 絶滅危惧IA類 | Dugong dugon ジュゴン | VU | ✓ | ✓ | ✓ | ✓ | Yes (5) | Chromosome, Reference | 3.16 Gbp 32.0x | 294 57.6 Mbp | 5 | 5 | 6 | 1/1 (100.0%) | 2/2 (100.0%) | 2020-08-31 |
| EN 絶滅危惧IB類 | Crocidura orii オリイジネズミ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/286 (0.3%) | 8/513 (1.6%) | — |
| EN 絶滅危惧IB類 | Mogera etigo エチゴモグラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/10 (0.0%) | 8/106 (7.5%) | — |
| EN 絶滅危惧IB類 | Pteropus pselaphon オガサワラオオコウモリ | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.93 Gbp 119.0x | 16,738 395 kbp | 1 | 5 | 17 | 4/59 (6.8%) | 13/186 (7.0%) | 2020-08-23 |
| EN 絶滅危惧IB類 | Rhinolophus cornutus orii オリイコキクガシラコウモリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 19 | 19 | 8/166 (4.8%) | 8/170 (4.7%) | — |
| EN 絶滅危惧IB類 | Rhinolophus pumilus pumilus オキナワコキクガシラコウモリ | — | — | — | — | — | No | — | — | — | 0 | 19 | 19 | 8/166 (4.8%) | 8/170 (4.7%) | — |
| EN 絶滅危惧IB類 | Murina ryukyuana リュウキュウテングコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 54 | 1/71 (1.4%) | 32/884 (3.6%) | — |
| EN 絶滅危惧IB類 | Nyctalus furvus コヤマコウモリ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 54 | 2/7 (28.6%) | 32/884 (3.6%) | — |
| EN 絶滅危惧IB類 | Miniopterus fuscus リュウキュウユビナガコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 4 | 2/73 (2.7%) | 2/73 (2.7%) | — |
| EN 絶滅危惧IB類 | Diplothrix legata ケナガネズミ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 148 | 0/1 (0.0%) | 38/1182 (3.2%) | — |
| EN 絶滅危惧IB類 | Tokudaia osimensis アマミトゲネズミ | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.44 Gbp 170.0x | 111,287 52.4 kbp | 1 | 6 | 148 | 3/3 (100.0%) | 38/1182 (3.2%) | 2022-11-01 |
| EN 絶滅危惧IB類 | Tokudaia tokunoshimensis トクノシマトゲネズミ | EN | ✓ | ✓ | ✓ | — | Yes (2) | Scaffold, Reference | 2.48 Gbp 135.0x | 569 13.6 Mbp | 2 | 6 | 148 | 3/3 (100.0%) | 38/1182 (3.2%) | 2023-09-08 |
| EN 絶滅危惧IB類 | Pentalagus furnessi アマミノクロウサギ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 21 | 0/1 (0.0%) | 10/135 (7.4%) | — |
| EN 絶滅危惧IB類 | Mustela sibirica シベリアイタチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 37 | 70 | 6/18 (33.3%) | 21/70 (30.0%) | — |
| VU 絶滅危惧II類 | Sorex minutissimus hawkeri トウキョウトガリネズミ | — | — | — | — | — | No | — | — | — | 0 | 9 | 13 | 5/72 (6.9%) | 8/513 (1.6%) | — |
| VU 絶滅危惧II類 | Rhinolophus perditus ヤエヤマコキクガシラコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 19 | 19 | 8/166 (4.8%) | 8/170 (4.7%) | — |
| VU 絶滅危惧II類 | Eptesicus japonensis クビワコウモリ | VU | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 3 | 54 | 1/11 (9.1%) | 32/884 (3.6%) | — |
| VU 絶滅危惧II類 | Myotis gracilis ウスリホオヒゲコウモリ | — | ✓ | — | — | — | No | — | — | — | 0 | 19 | 54 | 13/373 (3.5%) | 32/884 (3.6%) | — |
| VU 絶滅危惧II類 | Myotis nattereri bombinus ホンドノレンコウモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 19 | 54 | 13/373 (3.5%) | 32/884 (3.6%) | — |
| VU 絶滅危惧II類 | Myotis pruinosus クロホオヒゲコウモリ | EN | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 19 | 54 | 13/373 (3.5%) | 32/884 (3.6%) | — |
| VU 絶滅危惧II類 | Nyctalus aviator ヤマコウモリ | NT | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 1.78 Gbp 380.0x | 337 61.2 Mbp | 1 | 3 | 54 | 2/7 (28.6%) | 32/884 (3.6%) | 2024-05-31 |
| VU 絶滅危惧II類 | Pipistrellus endoi モリアブラコウモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 54 | 6/74 (8.1%) | 32/884 (3.6%) | — |
| VU 絶滅危惧II類 | Tadarida insignis オヒキコウモリ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 12 | 1/8 (12.5%) | 5/148 (3.4%) | — |
| NT 準絶滅危惧 | Crocidura shantungensis コジネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/286 (0.3%) | 8/513 (1.6%) | — |
| NT 準絶滅危惧 | Crocidura watasei ワタセジネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/286 (0.3%) | 8/513 (1.6%) | — |
| NT 準絶滅危惧 | Sorex hosonoi アズミトガリネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 13 | 5/72 (6.9%) | 8/513 (1.6%) | — |
| NT 準絶滅危惧 | Sorex shinto shikokensis シコクトガリネズミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 13 | 5/72 (6.9%) | 8/513 (1.6%) | — |
| NT 準絶滅危惧 | Euroscaptor mizura ミズラモグラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/1 (0.0%) | 8/106 (7.5%) | — |
| NT 準絶滅危惧 | Mogera tokudae サドモグラ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/10 (0.0%) | 8/106 (7.5%) | — |
| NT 準絶滅危惧 | Myodes rex montanus ミヤマムクゲネズミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 82 | 0/3 (0.0%) | 42/1110 (3.8%) | — |
| NT 準絶滅危惧 | Myodes rex rex リシリムクゲネズミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 82 | 0/3 (0.0%) | 42/1110 (3.8%) | — |
| NT 準絶滅危惧 | Ochotona hyperborea yesoensis エゾナキウサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 2/65 (3.1%) | 2/66 (3.0%) | — |
| NT 準絶滅危惧 | Lepus brachyurus lyoni サドノウサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 21 | 7/95 (7.4%) | 10/135 (7.4%) | — |
| NT 準絶滅危惧 | Martes melampus tsuensis ツシマテン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 70 | 4/9 (44.4%) | 21/70 (30.0%) | — |
| NT 準絶滅危惧 | Martes zibellina brachyura エゾクロテン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 9 | 70 | 4/9 (44.4%) | 21/70 (30.0%) | — |
| NT 準絶滅危惧 | Mustela erminea nippon ホンドオコジョ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 37 | 70 | 6/18 (33.3%) | 21/70 (30.0%) | — |
| NT 準絶滅危惧 | Mustela erminea orientalis エゾオコジョ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 37 | 70 | 6/18 (33.3%) | 21/70 (30.0%) | — |
| NT 準絶滅危惧 | Mustela nivalis namiyei ニホンイイズナ（本州亜種） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 4 | 37 | 70 | 6/18 (33.3%) | 21/70 (30.0%) | — |
| NT 準絶滅危惧 | Phoca vitulina ゼニガタアザラシ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.36 Gbp 45.0x | 21,601 284 kbp | 1 | 1 | 15 | 1/4 (25.0%) | 9/19 (47.4%) | 2019-02-11 |
| NT 準絶滅危惧 | Eumetopias jubatus トド | NT | ✓ | ✓ | ✓ | ✓ | Yes (3) | Scaffold, Reference | 2.42 Gbp 34.7x | 24,746 242 kbp | 3 | 3 | 14 | 1/1 (100.0%) | 5/16 (31.2%) | 2019-01-15 |
| DD 情報不足 | Hypsugo alaschanicus オオアブラコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/23 (0.0%) | 32/884 (3.6%) | — |
| DD 情報不足 | Murina tenebrosa クチバテングコウモリ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 54 | 1/71 (1.4%) | 32/884 (3.6%) | — |
| DD 情報不足 | Vespertilio murinus ヒメヒナコウモリ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 1.93 Gbp 44.0x | 1,157 3.32 Mbp | 2 | 2 | 54 | 1/2 (50.0%) | 32/884 (3.6%) | 2024-01-29 |
| DD 情報不足 | Tadarida latouchei スミイロオヒキコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 12 | 1/8 (12.5%) | 5/148 (3.4%) | — |
| DD 情報不足 | Tamias sibiricus lineatus エゾシマリス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 2 | 36 | 1/28 (3.6%) | 17/311 (5.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Chimarrogale platycephala 九州地方のカワネズミ | LC | ✓ | ✓ | — | ✓ | No | — | — | — | 0 | 0 | 13 | 0/6 (0.0%) | 8/513 (1.6%) | — |
| LP 絶滅のおそれの ある地域個体群 | Hipposideros turpis 波照間島のカグラコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 4/125 (3.2%) | 6/143 (4.2%) | — |
| LP 絶滅のおそれの ある地域個体群 | Barbastella leucomelas 四国のチチブコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/7 (0.0%) | 32/884 (3.6%) | — |
| LP 絶滅のおそれの ある地域個体群 | Myotis ikonnikovi hosonoi 紀伊半島のシナノホオヒゲコウモリ | — | — | — | — | — | No | — | — | — | 0 | 19 | 54 | 13/373 (3.5%) | 32/884 (3.6%) | — |
| LP 絶滅のおそれの ある地域個体群 | Plecotus sacrimontis 近畿地方以西のウサギコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 54 | 1/29 (3.4%) | 32/884 (3.6%) | — |
| LP 絶滅のおそれの ある地域個体群 | Macaca fuscata fuscata 北奥羽・北上山系のホンドザル | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Contig, Reference | 2.93 Gbp 42.0x | 90,905 94.9 kbp | 2 | 50 | 158 | 15/33 (45.5%) | 86/196 (43.9%) | 2018-04-04 |
| LP 絶滅のおそれの ある地域個体群 | Sciurus lis 九州地方のニホンリス | LC | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 36 | 3/17 (17.6%) | 17/311 (5.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ursus arctos yesoensis 石狩西部のエゾヒグマ | — | — | — | — | — | No | — | — | — | 3 | 11 | 17 | 4/13 (30.8%) | 7/20 (35.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ursus thibetanus japonicus 西中国地域のツキノワグマ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 2.21 Gbp 87.0x | 127,776 39.8 kbp | 2 | 11 | 17 | 4/13 (30.8%) | 7/20 (35.0%) | 2020-08-23 |
| LP 絶滅のおそれの ある地域個体群 | Cervus nippon 馬毛島のニホンジカ | LC | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 2.78 Gbp 37.0x | 51 89.6 Mbp | 3 | 10 | 62 | 5/7 (71.4%) | 23/171 (13.5%) | 2023-12-07 |
| LP 絶滅のおそれの ある地域個体群 | Sus scrofa riukiuanus 徳之島のリュウキュウイノシシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 43 | 44 | 47 | 2/16 (12.5%) | 4/27 (14.8%) | — |
| LP 絶滅のおそれの ある地域個体群 | Capricornis crispus 九州地方のカモシカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 266 | 1/12 (8.3%) | 73/237 (30.8%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Tadorna cristata カンムリツクシガモ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 124 | 1/6 (16.7%) | 65/207 (31.4%) | — |
| EX 絶滅 | Columba jouyi リュウキュウカラスバト | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 25 | 3/38 (7.9%) | 10/354 (2.8%) | — |
| EX 絶滅 | Columba versicolor オガサワラカラスバト | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 25 | 3/38 (7.9%) | 10/354 (2.8%) | — |
| EX 絶滅 | Nycticorax caledonicus crassirostris ハシブトゴイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 12 | 1/2 (50.0%) | 9/67 (13.4%) | — |
| EX 絶滅 | Porzana cinerea brevipes マミジロクイナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 21 | 0/1 (0.0%) | 15/144 (10.4%) | — |
| EX 絶滅 | Buteo buteo oshiroi ダイトウノスリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 3 | 21 | 179 | 16/29 (55.2%) | 144/274 (52.6%) | — |
| EX 絶滅 | Todiramphus miyakoensis ミヤコショウビン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 28 | 4/30 (13.3%) | 27/114 (23.7%) | — |
| EX 絶滅 | Dryocopus javensis richardsi キタタキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 16 | 1/6 (16.7%) | 11/223 (4.9%) | — |
| EX 絶滅 | Falco peregrinus furuitii シマハヤブサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 9 | 56 | 66 | 27/39 (69.2%) | 37/66 (56.1%) | — |
| EX 絶滅 | Poecile varius orii ダイトウヤマガラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/5 (0.0%) | 9/83 (10.8%) | — |
| EX 絶滅 | Apalopteron familiare familiare メグロ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 7/129 (5.4%) | — |
| EX 絶滅 | Troglodytes troglodytes orii ダイトウミソサザイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 7 | 0/17 (0.0%) | 7/118 (5.9%) | — |
| EX 絶滅 | Cichlopasser terrestris オガサワラガビチョウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Luscinia komadori subrufus ウスアカヒゲ | — | — | — | — | — | No | — | — | — | 0 | 1 | 33 | 1/6 (16.7%) | 31/294 (10.5%) | — |
| EX 絶滅 | Chaunoproctus ferreorostris オガサワラマシコ | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 87 | 0/1 (0.0%) | 45/291 (15.5%) | — |
| CR 絶滅危惧IA類 | Anser caerulescens caerulescens ハクガン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 124 | 4/15 (26.7%) | 65/207 (31.4%) | — |
| CR 絶滅危惧IA類 | Branta hutchinsii leucopareia シジュウカラガン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 3 | 124 | 3/9 (33.3%) | 65/207 (31.4%) | — |
| CR 絶滅危惧IA類 | Columba janthina nitens アカガシラカラスバト | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.08 Gbp 60.0x | 32,051 110 kbp | 1 | 10 | 25 | 3/38 (7.9%) | 10/354 (2.8%) | 2020-08-22 |
| CR 絶滅危惧IA類 | Puffinus bryani オガサワラヒメミズナギドリ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 2/33 (6.1%) | 6/114 (5.3%) | — |
| CR 絶滅危惧IA類 | Oceanodroma castro クロコシジロウミツバメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| CR 絶滅危惧IA類 | Ciconia boyciana コウノトリ | EN | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 1.24 Gbp 81.0x | 429 35.8 Mbp | 3 | 12 | 17 | 7/8 (87.5%) | 12/66 (18.2%) | 2019-05-08 |
| CR 絶滅危惧IA類 | Phalacrocorax urile チシマウガラス | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 9 | 6/21 (28.6%) | 6/43 (14.0%) | — |
| CR 絶滅危惧IA類 | Ixobrychus eurhythmus オオヨシゴイ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/10 (0.0%) | 9/67 (13.4%) | — |
| CR 絶滅危惧IA類 | Nipponia nippon トキ | EN | ✓ | ✓ | ✓ | ✓ | Yes (3) | Scaffold, Reference | 1.22 Gbp 105.0x | 130,029 29.1 kbp | 3 | 3 | 10 | 1/1 (100.0%) | 7/30 (23.3%) | 2014-06-16 |
| CR 絶滅危惧IA類 | Gallirallus okinawae ヤンバルクイナ | EN | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 1.18 Gbp 100.0x | 440 20.7 Mbp | 2 | 4 | 21 | 3/10 (30.0%) | 15/144 (10.4%) | 2019-05-11 |
| CR 絶滅危惧IA類 | Eurynorhynchus pygmeus ヘラシギ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 38.0x | 44,335 189 kbp | 1 | 20 | 56 | 14/24 (58.3%) | 44/87 (50.6%) | 2018-10-30 |
| CR 絶滅危惧IA類 | Tringa guttifer カラフトアオアシシギ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 56 | 5/16 (31.2%) | 44/87 (50.6%) | — |
| CR 絶滅危惧IA類 | Fratercula cirrhata エトピリカ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.11 Gbp 85.0x | 111,227 19.7 kbp | 1 | 4 | 12 | 2/3 (66.7%) | 7/23 (30.4%) | 2020-08-22 |
| CR 絶滅危惧IA類 | Synthliboramphus antiquus ウミスズメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/4 (0.0%) | 7/23 (30.4%) | — |
| CR 絶滅危惧IA類 | Uria aalge inornata ウミガラス | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 1.04 Gbp 74.0x | 104,657 19.4 kbp | 2 | 3 | 12 | 2/2 (100.0%) | 7/23 (30.4%) | 2020-08-22 |
| CR 絶滅危惧IA類 | Spilornis cheela perplexus カンムリワシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 179 | 1/13 (7.7%) | 144/274 (52.6%) | — |
| CR 絶滅危惧IA類 | Aegolius funereus magnus キンメフクロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 1 | 47 | 1/4 (25.0%) | 37/183 (20.2%) | — |
| CR 絶滅危惧IA類 | Bubo bubo ワシミミズク | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.26 Gbp 104.0x | 133,317 37.1 kbp | 1 | 6 | 47 | 4/18 (22.2%) | 37/183 (20.2%) | 2020-02-04 |
| CR 絶滅危惧IA類 | Ketupa blakistoni blakistoni シマフクロウ | — | — | ✓ | — | ✓ | No | — | — | — | 1 | 6 | 47 | 4/18 (22.2%) | 37/183 (20.2%) | — |
| CR 絶滅危惧IA類 | Picoides tridactylus inouyei ミユビゲラ | — | — | — | ✓ | ✓ | No | — | — | — | 1 | 1 | 16 | 1/5 (20.0%) | 11/223 (4.9%) | — |
| CR 絶滅危惧IA類 | Sapheopipo noguchii ノグチゲラ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.13 Gbp 74.0x | 179,014 18.5 kbp | 1 | 1 | 16 | 1/14 (7.1%) | 11/223 (4.9%) | 2019-02-16 |
| CR 絶滅危惧IA類 | Lanius tigrinus チゴモズ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 4 | 4/30 (13.3%) | 4/34 (11.8%) | — |
| CR 絶滅危惧IA類 | Chloris sinica kittlitzi オガサワラカワラヒワ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 87 | 0/5 (0.0%) | 45/291 (15.5%) | — |
| CR 絶滅危惧IA類 | Emberiza aureola ornata シマアオジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 87 | 5/44 (11.4%) | 45/291 (15.5%) | — |
| EN 絶滅危惧IB類 | Lagopus muta japonica ライチョウ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 1.00 Gbp 71.0x | 72,306 56.2 kbp | 3 | 4 | 89 | 2/6 (33.3%) | 30/206 (14.6%) | 2019-02-15 |
| EN 絶滅危惧IB類 | Anser erythropus カリガネ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 124 | 4/15 (26.7%) | 65/207 (31.4%) | — |
| EN 絶滅危惧IB類 | Phaethon rubricauda rothschildi アカオネッタイチョウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/3 (66.7%) | 2/3 (66.7%) | — |
| EN 絶滅危惧IB類 | Chalcophaps indica yamashinai キンバト | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 25 | 0/3 (0.0%) | 10/354 (2.8%) | — |
| EN 絶滅危惧IB類 | Columba janthina stejnegeri ヨナグニカラスバト | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 10 | 25 | 3/38 (7.9%) | 10/354 (2.8%) | — |
| EN 絶滅危惧IB類 | Streptopelia decaocto decaocto シラコバト | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 4 | 25 | 2/15 (13.3%) | 10/354 (2.8%) | — |
| EN 絶滅危惧IB類 | Phoebastria immutabilis コアホウドリ | NT | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.21 Gbp 55.0x | 24,439 107 kbp | 1 | 5 | 8 | 4/6 (66.7%) | 7/27 (25.9%) | 2024-01-11 |
| EN 絶滅危惧IB類 | Puffinus lherminieri bannermani セグロミズナギドリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 2/33 (6.1%) | 6/114 (5.3%) | — |
| EN 絶滅危惧IB類 | Sula sula rubripes アカアシカツオドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 6 | 13 | 5/6 (83.3%) | 9/11 (81.8%) | — |
| EN 絶滅危惧IB類 | Phalacrocorax pelagicus pelagicus ヒメウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 9 | 9 | 6/21 (28.6%) | 6/43 (14.0%) | — |
| EN 絶滅危惧IB類 | Botaurus stellaris stellaris サンカノゴイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 2 | 12 | 2/4 (50.0%) | 9/67 (13.4%) | — |
| EN 絶滅危惧IB類 | Platalea minor クロツラヘラサギ | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.24 Gbp 19.0x | 1,460 8.68 Mbp | 1 | 1 | 10 | 1/6 (16.7%) | 7/30 (23.3%) | 2024-04-05 |
| EN 絶滅危惧IB類 | Coturnicops exquisitus シマクイナ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 21 | 0/3 (0.0%) | 15/144 (10.4%) | — |
| EN 絶滅危惧IB類 | Rallina eurizonoides sepiaria オオクイナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 21 | 0/3 (0.0%) | 15/144 (10.4%) | — |
| EN 絶滅危惧IB類 | Numenius minutus コシャクシギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 56 | 2/9 (22.2%) | 44/87 (50.6%) | — |
| EN 絶滅危惧IB類 | Accipiter gularis iwasakii リュウキュウツミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 30 | 179 | 23/49 (46.9%) | 144/274 (52.6%) | — |
| EN 絶滅危惧IB類 | Aquila chrysaetos japonica イヌワシ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, — | 1.19 Gbp 100.0x | 348 16.9 Mbp | 8 | 15 | 179 | 8/13 (61.5%) | 144/274 (52.6%) | 2020-04-03 |
| EN 絶滅危惧IB類 | Buteo buteo toyoshimai オガサワラノスリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 21 | 179 | 16/29 (55.2%) | 144/274 (52.6%) | — |
| EN 絶滅危惧IB類 | Circus spilonotus spilonotus チュウヒ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 10 | 179 | 9/17 (52.9%) | 144/274 (52.6%) | — |
| EN 絶滅危惧IB類 | Nisaetus nipalensis orientalis クマタカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 5 | 179 | 4/11 (36.4%) | 144/274 (52.6%) | — |
| EN 絶滅危惧IB類 | Eurystomus orientalis calonyx ブッポウソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 2/4 (50.0%) | 4/12 (33.3%) | — |
| EN 絶滅危惧IB類 | Pitta nympha ヤイロチョウ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/15 (6.7%) | 1/47 (2.1%) | — |
| EN 絶滅危惧IB類 | Lanius cristatus superciliosus アカモズ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 4 | 4/30 (13.3%) | 4/34 (11.8%) | — |
| EN 絶滅危惧IB類 | Poecile varius namiyei ナミエヤマガラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/5 (0.0%) | 9/83 (10.8%) | — |
| EN 絶滅危惧IB類 | Poecile varius owstoni オーストンヤマガラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/5 (0.0%) | 9/83 (10.8%) | — |
| EN 絶滅危惧IB類 | Apalopteron familiare hahasima ハハジマメグロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 7/129 (5.4%) | — |
| EN 絶滅危惧IB類 | Locustella pleskei ウチヤマセンニュウ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/4 (25.0%) | 2/62 (3.2%) | — |
| EN 絶滅危惧IB類 | Locustella pryeri pryeri オオセッカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/22 (4.5%) | 2/62 (3.2%) | — |
| EN 絶滅危惧IB類 | Troglodytes troglodytes mosukei モスケミソサザイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/17 (0.0%) | 7/118 (5.9%) | — |
| EN 絶滅危惧IB類 | Luscinia komadori namiyei ホントウアカヒゲ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 33 | 1/6 (16.7%) | 31/294 (10.5%) | — |
| EN 絶滅危惧IB類 | Turdus celaenops アカコッコ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 25 | 4/86 (4.7%) | 19/216 (8.8%) | — |
| VU 絶滅危惧II類 | Coturnix japonica ウズラ | NT | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 928 Mbp 73.0x | 9,641 511 kbp | 2 | 3 | 89 | 2/15 (13.3%) | 30/206 (14.6%) | 2016-03-01 |
| VU 絶滅危惧II類 | Anas formosa トモエガモ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.24 Gbp 60.0x | 565,536 8.73 kbp | 1 | 1 | 124 | 1/1 (100.0%) | 65/207 (31.4%) | 2024-04-22 |
| VU 絶滅危惧II類 | Anser fabalis serrirostris ヒシクイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 124 | 4/15 (26.7%) | 65/207 (31.4%) | — |
| VU 絶滅危惧II類 | Branta bernicla orientalis コクガン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 124 | 3/9 (33.3%) | 65/207 (31.4%) | — |
| VU 絶滅危惧II類 | Tadorna tadorna ツクシガモ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 195.0x | 34,957 169 kbp | 1 | 1 | 124 | 1/6 (16.7%) | 65/207 (31.4%) | 2024-12-06 |
| VU 絶滅危惧II類 | Phoebastria albatrus アホウドリ | VU | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 1.21 Gbp 44.0x | 36,840 68.7 kbp | 2 | 5 | 8 | 4/6 (66.7%) | 7/27 (25.9%) | 2020-08-22 |
| VU 絶滅危惧II類 | Oceanodroma monorhis ヒメクロウミツバメ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| VU 絶滅危惧II類 | Gorsachius goisagi ミゾゴイ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.19 Gbp 103.0x | 100,190 43.0 kbp | 1 | 3 | 12 | 2/4 (50.0%) | 9/67 (13.4%) | 2021-03-31 |
| VU 絶滅危惧II類 | Gorsachius melanolophus ズグロミゾゴイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 12 | 2/4 (50.0%) | 9/67 (13.4%) | — |
| VU 絶滅危惧II類 | Grus japonensis タンチョウ | VU | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 1.22 Gbp 100.0x | 603 19.9 Mbp | 2 | 11 | 17 | 5/7 (71.4%) | 8/16 (50.0%) | 2019-05-08 |
| VU 絶滅危惧II類 | Grus monacha ナベヅル | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 67.0x | 95,217 38.5 kbp | 1 | 11 | 17 | 5/7 (71.4%) | 8/16 (50.0%) | 2020-04-08 |
| VU 絶滅危惧II類 | Grus vipio マナヅル | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 54.0x | 107,175 32.9 kbp | 1 | 1 | 17 | 1/4 (25.0%) | 8/16 (50.0%) | 2020-04-08 |
| VU 絶滅危惧II類 | Charadrius alexandrinus dealbatus シロチドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 14 | 2/24 (8.3%) | 10/85 (11.8%) | — |
| VU 絶滅危惧II類 | Himantopus himantopus himantopus セイタカシギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 2 | 3 | 1/3 (33.3%) | 2/8 (25.0%) | — |
| VU 絶滅危惧II類 | Limosa lapponica baueri オオソリハシシギ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.03 Gbp 71.0x | 139,617 21.3 kbp | 1 | 1 | 56 | 1/4 (25.0%) | 44/87 (50.6%) | 2017-12-15 |
| VU 絶滅危惧II類 | Numenius madagascariensis ホウロクシギ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 56 | 2/9 (22.2%) | 44/87 (50.6%) | — |
| VU 絶滅危惧II類 | Scolopax mira アマミヤマシギ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.09 Gbp 55.0x | 79,353 61.2 kbp | 1 | 5 | 56 | 4/4 (100.0%) | 44/87 (50.6%) | 2019-02-15 |
| VU 絶滅危惧II類 | Tringa erythropus ツルシギ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.09 Gbp 199.0x | 43,935 198 kbp | 1 | 5 | 56 | 5/16 (31.2%) | 44/87 (50.6%) | 2024-12-06 |
| VU 絶滅危惧II類 | Tringa glareola タカブシギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 56 | 5/16 (31.2%) | 44/87 (50.6%) | — |
| VU 絶滅危惧II類 | Tringa totanus ussuriensis アカアシシギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 56 | 5/16 (31.2%) | 44/87 (50.6%) | — |
| VU 絶滅危惧II類 | Rostratula benghalensis benghalensis タマシギ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.10 Gbp 67.0x | 33,928 78.7 kbp | 1 | 1 | 2 | 1/1 (100.0%) | 2/2 (100.0%) | 2020-07-10 |
| VU 絶滅危惧II類 | Glareola maldivarum ツバメチドリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/5 (20.0%) | 3/11 (27.3%) | — |
| VU 絶滅危惧II類 | Larus saundersi ズグロカモメ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 30 | 3/12 (25.0%) | 20/104 (19.2%) | — |
| VU 絶滅危惧II類 | Sterna albifrons sinensis コアジサシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 1 | 30 | 1/7 (14.3%) | 20/104 (19.2%) | — |
| VU 絶滅危惧II類 | Sterna bergii cristata オオアジサシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 30 | 0/8 (0.0%) | 20/104 (19.2%) | — |
| VU 絶滅危惧II類 | Sterna dougallii bangsi ベニアジサシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 30 | 1/10 (10.0%) | 20/104 (19.2%) | — |
| VU 絶滅危惧II類 | Sterna sumatrana エリグロアジサシ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 30 | 1/10 (10.0%) | 20/104 (19.2%) | — |
| VU 絶滅危惧II類 | Cepphus carbo ケイマフリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 12 | 1/3 (33.3%) | 7/23 (30.4%) | — |
| VU 絶滅危惧II類 | Synthliboramphus wumizusume カンムリウミスズメ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/4 (0.0%) | 7/23 (30.4%) | — |
| VU 絶滅危惧II類 | Butastur indicus サシバ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 75.0x | 67,994 36.2 kbp | 1 | 3 | 179 | 3/4 (75.0%) | 144/274 (52.6%) | 2022-12-09 |
| VU 絶滅危惧II類 | Haliaeetus albicilla albicilla オジロワシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 5 | 10 | 179 | 6/10 (60.0%) | 144/274 (52.6%) | — |
| VU 絶滅危惧II類 | Haliaeetus pelagicus オオワシ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 49.0x | 33,489 86.6 kbp | 1 | 10 | 179 | 6/10 (60.0%) | 144/274 (52.6%) | 2020-08-22 |
| VU 絶滅危惧II類 | Otus elegans interpositus ダイトウコノハズク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 15 | 47 | 14/38 (36.8%) | 37/183 (20.2%) | — |
| VU 絶滅危惧II類 | Otus lempiji pryeri リュウキュウオオコノハズク | — | ✓ | — | — | — | No | — | — | — | 1 | 15 | 47 | 14/38 (36.8%) | 37/183 (20.2%) | — |
| VU 絶滅危惧II類 | Dendrocopos leucotos owstoni オーストンオオアカゲラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 16 | 1/14 (7.1%) | 11/223 (4.9%) | — |
| VU 絶滅危惧II類 | Dryocopus martius martius クマゲラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 1 | 16 | 1/6 (16.7%) | 11/223 (4.9%) | — |
| VU 絶滅危惧II類 | Falco peregrinus japonensis ハヤブサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 9 | 56 | 66 | 27/39 (69.2%) | 37/66 (56.1%) | — |
| VU 絶滅危惧II類 | Pericrocotus divaricatus divaricatus サンショウクイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/14 (0.0%) | 1/86 (1.2%) | — |
| VU 絶滅危惧II類 | Phylloscopus ijimae イイジマムシクイ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 11 | 7/86 (8.1%) | 8/88 (9.1%) | — |
| VU 絶滅危惧II類 | Luscinia akahige tanensis タネコマドリ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 33 | 1/6 (16.7%) | 31/294 (10.5%) | — |
| VU 絶滅危惧II類 | Luscinia komadori komadori アカヒゲ | — | — | — | — | — | No | — | — | — | 0 | 1 | 33 | 1/6 (16.7%) | 31/294 (10.5%) | — |
| VU 絶滅危惧II類 | Zoothera dauma major オオトラツグミ | NT | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 25 | 0/20 (0.0%) | 19/216 (8.8%) | — |
| VU 絶滅危惧II類 | Emberiza yessoensis yessoensis コジュリン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 87 | 5/44 (11.4%) | 45/291 (15.5%) | — |
| NT 準絶滅危惧 | Syrmaticus soemmerringii ijimae コシジロヤマドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 89 | 2/5 (40.0%) | 30/206 (14.6%) | — |
| NT 準絶滅危惧 | Syrmaticus soemmerringii soemmerringii アカヤマドリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 89 | 2/5 (40.0%) | 30/206 (14.6%) | — |
| NT 準絶滅危惧 | Anser albifrons albifrons マガン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 124 | 4/15 (26.7%) | 65/207 (31.4%) | — |
| NT 準絶滅危惧 | Anser fabalis middendorffii オオヒシクイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 124 | 4/15 (26.7%) | 65/207 (31.4%) | — |
| NT 準絶滅危惧 | Columba janthina janthina カラスバト | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 10 | 25 | 3/38 (7.9%) | 10/354 (2.8%) | — |
| NT 準絶滅危惧 | Oceanodroma matsudairae クロウミツバメ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| NT 準絶滅危惧 | Oceanodroma tristrami オーストンウミツバメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| NT 準絶滅危惧 | Egretta eulophotes カラシラサギ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 12 | 1/12 (8.3%) | 9/67 (13.4%) | — |
| NT 準絶滅危惧 | Egretta intermedia intermedia チュウサギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 12 | 1/12 (8.3%) | 9/67 (13.4%) | — |
| NT 準絶滅危惧 | Ixobrychus sinensis sinensis ヨシゴイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 12 | 0/10 (0.0%) | 9/67 (13.4%) | — |
| NT 準絶滅危惧 | Porzana fusca erythrothorax ヒクイナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 21 | 2/9 (22.2%) | 15/144 (10.4%) | — |
| NT 準絶滅危惧 | Caprimulgus indicus jotaka ヨタカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 6 | 1/30 (3.3%) | 4/74 (5.4%) | — |
| NT 準絶滅危惧 | Calidris alpina ハマシギ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.27 Gbp 48.0x | 98,812 98.5 kbp | 1 | 20 | 56 | 14/24 (58.3%) | 44/87 (50.6%) | 2023-11-14 |
| NT 準絶滅危惧 | Gallinago hardwickii オオジシギ | NT | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.14 Gbp 105.0x | 119,495 25.4 kbp | 1 | 11 | 56 | 11/13 (84.6%) | 44/87 (50.6%) | 2022-11-10 |
| NT 準絶滅危惧 | Larus schistisagus オオセグロカモメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 30 | 6/28 (21.4%) | 20/104 (19.2%) | — |
| NT 準絶滅危惧 | Pandion haliaetus haliaetus ミサゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 2 | 2 | 1/2 (50.0%) | 1/2 (50.0%) | — |
| NT 準絶滅危惧 | Accipiter gentilis fujiyamae オオタカ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 6 | 30 | 179 | 23/49 (46.9%) | 144/274 (52.6%) | — |
| NT 準絶滅危惧 | Accipiter nisus nisosimilis ハイタカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 30 | 179 | 23/49 (46.9%) | 144/274 (52.6%) | — |
| NT 準絶滅危惧 | Pernis ptilorhynchus orientalis ハチクマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 179 | 2/5 (40.0%) | 144/274 (52.6%) | — |
| NT 準絶滅危惧 | Poecile varius olivaceus オリイヤマガラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/5 (0.0%) | 9/83 (10.8%) | — |
| NT 準絶滅危惧 | Locustella lanceolata マキノセンニュウ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.19 Gbp 215.0x | 97,266 134 kbp | 1 | 1 | 2 | 1/22 (4.5%) | 2/62 (3.2%) | 2024-12-06 |
| NT 準絶滅危惧 | Emberiza sulphurata ノジコ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 87 | 5/44 (11.4%) | 45/291 (15.5%) | — |
| DD 情報不足 | Tetrastes bonasia vicinitas エゾライチョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 89 | 0/2 (0.0%) | 30/206 (14.6%) | — |
| DD 情報不足 | Aix galericulata オシドリ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.08 Gbp 230.0x | 34,019 77.4 kbp | 1 | 2 | 124 | 2/3 (66.7%) | 65/207 (31.4%) | 2022-08-16 |
| DD 情報不足 | Anser cygnoides サカツラガン | VU | ✓ | ✓ | ✓ | ✓ | Yes (7) | Chromosome, Reference | 1.22 Gbp 70.0x | 116 39.7 Mbp | 7 | 14 | 124 | 4/15 (26.7%) | 65/207 (31.4%) | 2015-04-08 |
| DD 情報不足 | Aythya baeri アカハジロ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 1.14 Gbp 162.1x | 227 29.1 Mbp | 1 | 9 | 124 | 4/12 (33.3%) | 65/207 (31.4%) | 2022-11-27 |
| DD 情報不足 | Tadorna ferruginea アカツクシガモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 124 | 1/6 (16.7%) | 65/207 (31.4%) | — |
| DD 情報不足 | Pterodroma hypoleuca シロハラミズナギドリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/37 (0.0%) | 6/114 (5.3%) | — |
| DD 情報不足 | Platalea leucorodia leucorodia ヘラサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/6 (16.7%) | 7/30 (23.3%) | — |
| DD 情報不足 | Threskiornis melanocephalus クロトキ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/4 (25.0%) | 7/30 (23.3%) | — |
| DD 情報不足 | Grus grus lilfordi クロヅル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 3 | 11 | 17 | 5/7 (71.4%) | 8/16 (50.0%) | — |
| DD 情報不足 | Vanellus cinereus ケリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 14 | 1/11 (9.1%) | 10/85 (11.8%) | — |
| DD 情報不足 | Calidris ptilocnemis quarta チシマシギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 20 | 56 | 14/24 (58.3%) | 44/87 (50.6%) | — |
| DD 情報不足 | Limnodromus semipalmatus シベリアオオハシシギ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 56 | 1/4 (25.0%) | 44/87 (50.6%) | — |
| DD 情報不足 | Brachyramphus perdix マダラウミスズメ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/3 (0.0%) | 7/23 (30.4%) | — |
| DD 情報不足 | Cettia diphone restricta ダイトウウグイス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/15 (6.7%) | 1/19 (5.3%) | — |
| DD 情報不足 | Phylloscopus examinandus オオムシクイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 11 | 7/86 (8.1%) | 8/88 (9.1%) | — |
| DD 情報不足 | Ficedula narcissina owstoni リュウキュウキビタキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 33 | 4/34 (11.8%) | 31/294 (10.5%) | — |
| DD 情報不足 | Zoothera dauma iriomotensis コトラツグミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 25 | 0/20 (0.0%) | 19/216 (8.8%) | — |
| LP 絶滅のおそれの ある地域個体群 | Histrionicus histrionicu 東北地方以北のシノリガモ繁殖個体群 | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 124 | 0/1 (0.0%) | 65/207 (31.4%) | — |
| LP 絶滅のおそれの ある地域個体群 | Podiceps cristatus cristatus 青森県のカンムリカイツブリ繁殖個体群 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 3 | 4 | 3/6 (50.0%) | 4/17 (23.5%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae orientalis マダラトカゲモドキ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/27 (0.0%) | 2/47 (4.3%) | — |
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae toyamai イヘヤトカゲモドキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/27 (0.0%) | 2/47 (4.3%) | — |
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae yamashinae クメトカゲモドキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/27 (0.0%) | 2/47 (4.3%) | — |
| CR 絶滅危惧IA類 | Takydromus toyamai ミヤコカナヘビ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 45 | 0/24 (0.0%) | 25/404 (6.2%) | — |
| CR 絶滅危惧IA類 | Opisthotropis kikuzatoi キクザトサワヘビ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 71 | 0/21 (0.0%) | 57/1032 (5.5%) | — |
| EN 絶滅危惧IB類 | Caretta caretta アカウミガメ | VU | ✓ | ✓ | ✓ | ✓ | Yes (4) | Chromosome, Reference | 2.13 Gbp 109.0x | 2,751 18.2 Mbp | 4 | 4 | 13 | 1/1 (100.0%) | 5/14 (35.7%) | 2022-06-07 |
| EN 絶滅危惧IB類 | Eretmochelys imbricata タイマイ | CR | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 2.30 Gbp 81.0x | 303 82.0 Mbp | 2 | 2 | 13 | 1/1 (100.0%) | 5/14 (35.7%) | 2023-05-15 |
| EN 絶滅危惧IB類 | Goniurosaurus kuroiwae sengokui ケラマトカゲモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/27 (0.0%) | 2/47 (4.3%) | — |
| EN 絶滅危惧IB類 | Goniurosaurus splendens オビトカゲモドキ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/27 (0.0%) | 2/47 (4.3%) | — |
| EN 絶滅危惧IB類 | Plestiodon takarai センカクトカゲ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/50 (2.0%) | 14/1553 (0.9%) | — |
| EN 絶滅危惧IB類 | Calamaria pfefferi ミヤコヒメヘビ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 71 | 1/18 (5.6%) | 57/1032 (5.5%) | — |
| EN 絶滅危惧IB類 | Elaphe carinata carinata シュウダ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 71 | 0/20 (0.0%) | 57/1032 (5.5%) | — |
| EN 絶滅危惧IB類 | Elaphe carinata yonaguniensis ヨナグニシュウダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 71 | 0/20 (0.0%) | 57/1032 (5.5%) | — |
| EN 絶滅危惧IB類 | Hebius concelarus ミヤコヒバァ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 71 | 0/42 (0.0%) | 57/1032 (5.5%) | — |
| VU 絶滅危惧II類 | Chelonia mydas mydas アオウミガメ | — | — | — | ✓ | — | No | — | — | — | 3 | 3 | 13 | 1/1 (100.0%) | 5/14 (35.7%) | — |
| VU 絶滅危惧II類 | Cuora flavomarginata evelynae ヤエヤマセマルハコガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 2/16 (12.5%) | 6/108 (5.6%) | — |
| VU 絶滅危惧II類 | Geoemyda japonica リュウキュウヤマガメ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/2 (0.0%) | 6/108 (5.6%) | — |
| VU 絶滅危惧II類 | Mauremys mutica kami ヤエヤマイシガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 3 | 8 | 2/20 (10.0%) | 6/108 (5.6%) | — |
| VU 絶滅危惧II類 | Goniurosaurus kuroiwae kuroiwae クロイワトカゲモドキ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/27 (0.0%) | 2/47 (4.3%) | — |
| VU 絶滅危惧II類 | Gekko yakuensis ヤクヤモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 2/91 (2.2%) | 8/1757 (0.5%) | — |
| VU 絶滅危惧II類 | Hemidactylus bowringii タシロヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 8 | 3/231 (1.3%) | 8/1757 (0.5%) | — |
| VU 絶滅危惧II類 | Perochirus ateles ミナミトリシマヤモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/2 (0.0%) | 8/1757 (0.5%) | — |
| VU 絶滅危惧II類 | Diploderma polygonatum donan ヨナグニキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/45 (0.0%) | 17/583 (2.9%) | — |
| VU 絶滅危惧II類 | Diploderma polygonatum polygonatum オキナワキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/45 (0.0%) | 17/583 (2.9%) | — |
| VU 絶滅危惧II類 | Emoia atrocostata atrocostata ミヤコトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/36 (0.0%) | 14/1553 (0.9%) | — |
| VU 絶滅危惧II類 | Plestiodon barbouri バーバートカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/50 (2.0%) | 14/1553 (0.9%) | — |
| VU 絶滅危惧II類 | Plestiodon kishinouyei キシノウエトカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/50 (2.0%) | 14/1553 (0.9%) | — |
| VU 絶滅危惧II類 | Plestiodon marginatus オキナワトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/50 (2.0%) | 14/1553 (0.9%) | — |
| VU 絶滅危惧II類 | Takydromus dorsalis サキシマカナヘビ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 45 | 0/24 (0.0%) | 25/404 (6.2%) | — |
| VU 絶滅危惧II類 | Zootoca vivipara コモチカナヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 1.44 Gbp 34.0x | 731 3.45 Mbp | 3 | 3 | 45 | 1/2 (50.0%) | 25/404 (6.2%) | 2020-04-01 |
| VU 絶滅危惧II類 | Calamaria pavimentata miyarai ミヤラヒメヘビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 71 | 1/18 (5.6%) | 57/1032 (5.5%) | — |
| VU 絶滅危惧II類 | Elaphe taeniura schmackeri サキシマスジオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 71 | 0/20 (0.0%) | 57/1032 (5.5%) | — |
| VU 絶滅危惧II類 | Achalinus formosanus chigirai ヤエヤマタカチホヘビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/36 (0.0%) | 0/46 (0.0%) | — |
| VU 絶滅危惧II類 | Emydocephalus ijimae イイジマウミヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.63 Gbp 82.0x | 171,534 18.5 kbp | 1 | 1 | 12 | 1/2 (50.0%) | 10/56 (17.9%) | 2019-01-09 |
| VU 絶滅危惧II類 | Laticauda laticaudata ヒロオウミヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.56 Gbp 133.0x | 89,677 35.6 kbp | 1 | 3 | 19 | 2/7 (28.6%) | 15/284 (5.3%) | 2019-01-09 |
| VU 絶滅危惧II類 | Laticauda semifasciata エラブウミヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 19 | 2/7 (28.6%) | 15/284 (5.3%) | — |
| VU 絶滅危惧II類 | Sinomicrurus macclellandi iwasakii イワサキワモンベニヘビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/15 (0.0%) | 15/284 (5.3%) | — |
| NT 準絶滅危惧 | Mauremys japonica ニホンイシガメ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 8 | 2/20 (10.0%) | 6/108 (5.6%) | — |
| NT 準絶滅危惧 | Gekko shibatai タカラヤモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 2/91 (2.2%) | 8/1757 (0.5%) | — |
| NT 準絶滅危惧 | Gekko sp. 1 オキナワヤモリ | — | — | — | — | — | No | — | — | — | 0 | 2 | 8 | 2/91 (2.2%) | 8/1757 (0.5%) | — |
| NT 準絶滅危惧 | Gekko tawaensis タワヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 2/91 (2.2%) | 8/1757 (0.5%) | — |
| NT 準絶滅危惧 | Diploderma polygonatum ishigakiense サキシマキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/45 (0.0%) | 17/583 (2.9%) | — |
| NT 準絶滅危惧 | Cryptoblepharus nigropunctatus オガサワラトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 17 | 1/52 (1.9%) | 14/1553 (0.9%) | — |
| NT 準絶滅危惧 | Plestiodon oshimensis オオシマトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/50 (2.0%) | 14/1553 (0.9%) | — |
| NT 準絶滅危惧 | Plestiodon stimpsonii イシガキトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/50 (2.0%) | 14/1553 (0.9%) | — |
| NT 準絶滅危惧 | Takydromus amurensis アムールカナヘビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 45 | 0/24 (0.0%) | 25/404 (6.2%) | — |
| NT 準絶滅危惧 | Cyclophiops herminae サキシマアオヘビ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 71 | 0/0 | 57/1032 (5.5%) | — |
| NT 準絶滅危惧 | Dinodon rufozonatum rufozonatum アカマダラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 71 | 2/68 (2.9%) | 57/1032 (5.5%) | — |
| NT 準絶滅危惧 | Lycodon ruhstrati multifasciatus サキシマバイカダ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 71 | 2/68 (2.9%) | 57/1032 (5.5%) | — |
| NT 準絶滅危惧 | Pareas iwasakii イワサキセダカヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/39 (2.6%) | 1/46 (2.2%) | — |
| NT 準絶滅危惧 | Achalinus werneri アマミタカチホヘビ | NT | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/36 (0.0%) | 0/46 (0.0%) | — |
| NT 準絶滅危惧 | Sinomicrurus japonicus boettgeri ハイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/15 (0.0%) | 15/284 (5.3%) | — |
| NT 準絶滅危惧 | Sinomicrurus japonicus japonicus ヒャン | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 19 | 0/15 (0.0%) | 15/284 (5.3%) | — |
| NT 準絶滅危惧 | Protobothrops tokarensis トカラハブ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 44 | 2/16 (12.5%) | 34/405 (8.4%) | — |
| DD 情報不足 | Pelodiscus sinensis ニホンスッポン | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.20 Gbp 105.0x | 205,379 22.0 kbp | 1 | 1 | 6 | 1/20 (5.0%) | 5/52 (9.6%) | 2012-07-24 |
| DD 情報不足 | Plestiodon kuchinoshimensis クチノシマトカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/50 (2.0%) | 14/1553 (0.9%) | — |
| DD 情報不足 | Hebius vibakari danjoensis ダンジョヒバカリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 71 | 0/42 (0.0%) | 57/1032 (5.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Lepidodactylus lugubris 大東諸島のオガサワラヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/34 (2.9%) | 8/1757 (0.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ateuchosaurus pellopleurus 三島のヘリグロヒメトカゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/2 (0.0%) | 14/1553 (0.9%) | — |
| LP 絶滅のおそれの ある地域個体群 | Plestiodon latiscutatus 三宅島、八丈島、青ヶ島のオカダトカゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 17 | 1/50 (2.0%) | 14/1553 (0.9%) | — |
| LP 絶滅のおそれの ある地域個体群 | Takydromus smaragdinus 沖永良部島、徳之島のアオカナヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 45 | 0/24 (0.0%) | 25/404 (6.2%) | — |
| LP 絶滅のおそれの ある地域個体群 | Dinodon rufozonatum walli 宮古諸島のサキシママダラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 71 | 2/68 (2.9%) | 57/1032 (5.5%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| CR 絶滅危惧IA類 | Hynobius abei アベサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| CR 絶滅危惧IA類 | Hynobius amakusaensis アマクササンショウウオ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| CR 絶滅危惧IA類 | Hynobius mikawaensis ミカワサンショウウオ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| CR 絶滅危惧IA類 | Hynobius tosashimizuensis トサシミズサンショウウオ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| CR 絶滅危惧IA類 | Onychodactylus tsukubaensis ツクバハコネサンショウウオ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius abuensis アブサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius akiensis アキサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius hidamontanus ハクバサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius iwami イワミサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius katoi アカイシサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius naevius ブチサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius osumiensis オオスミサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius setoi サンインサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius shinichisatoi ソボサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius takedai ホクリクサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Hynobius tsurugiensis ツルギサンショウウオ | EN | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Salamandrella keyserlingii キタサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/132 (0.0%) | — |
| EN 絶滅危惧IB類 | Babina holsti ホルストガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/3 (0.0%) | 14/733 (1.9%) | — |
| EN 絶滅危惧IB類 | Babina subaspera オットンガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/3 (0.0%) | 14/733 (1.9%) | — |
| EN 絶滅危惧IB類 | Glandirana susurra サドガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 23 | 1/6 (16.7%) | 14/733 (1.9%) | — |
| EN 絶滅危惧IB類 | Odorrana ishikawae オキナワイシカワガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/97 (0.0%) | 14/733 (1.9%) | — |
| EN 絶滅危惧IB類 | Odorrana splendida アマミイシカワガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/97 (0.0%) | 14/733 (1.9%) | — |
| EN 絶滅危惧IB類 | Odorrana utsunomiyaorum コガタハナサキガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/97 (0.0%) | 14/733 (1.9%) | — |
| EN 絶滅危惧IB類 | Pelophylax porosus brevipodus ナゴヤダルマガエル | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 2 | 23 | 1/118 (0.8%) | 14/733 (1.9%) | — |
| EN 絶滅危惧IB類 | Limnonectes namiyei ナミエガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/171 (0.0%) | 3/876 (0.3%) | — |
| VU 絶滅危惧II類 | Hynobius bakan ヤマグチサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius boulengeri オオダイガハラサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius dunni オオイタサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius fossigenus ヒガシヒダサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius guttatus マホロバサンショウウオ | NT | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius ikioi ベッコウサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius kuishiensis イヨシマサンショウウオ | VU | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius nebulosus カスミサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius okiensis オキサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius oyamai チクシブチサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius sematonotos チュウゴクブチサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius setouchi セトウチサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius stejnegeri コガタブチサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius tokyoensis トウキョウサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius utsunomiyaorum ヒバサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Hynobius vandenburghi ヤマトサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Onychodactylus kinneburi シコクハコネサンショウウオ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Andrias japonicus オオサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/5 (0.0%) | — |
| VU 絶滅危惧II類 | Echinotriton andersoni イボイモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/3 (0.0%) | 5/168 (3.0%) | — |
| VU 絶滅危惧II類 | Nidirana okinavana ヤエヤマハラブチガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/34 (0.0%) | 14/733 (1.9%) | — |
| VU 絶滅危惧II類 | Odorrana amamiensis アマミハナサキガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/97 (0.0%) | 14/733 (1.9%) | — |
| VU 絶滅危惧II類 | Odorrana narina ハナサキガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/97 (0.0%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Hynobius hirosei イシヅチサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Hynobius kimurae ヒダサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Hynobius lichenatus トウホクサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Hynobius nigrescens クロサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Hynobius tsuensis ツシマサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Onychodactylus fuscus タダミハコネサンショウウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Onychodactylus intermedius バンダイハコネサンショウウオ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| NT 準絶滅危惧 | Cynops ensicauda シリケンイモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/6 (0.0%) | 5/168 (3.0%) | — |
| NT 準絶滅危惧 | Cynops pyrrhogaster アカハライモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/6 (0.0%) | 5/168 (3.0%) | — |
| NT 準絶滅危惧 | Bufo gargarizans miyakonis ミヤコヒキガエル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 3 | 18 | 2/33 (6.1%) | 13/857 (1.5%) | — |
| NT 準絶滅危惧 | Odorrana supranarina オオハナサキガエル | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 23 | 0/97 (0.0%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Pelophylax nigromaculatus トノサマガエル | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 23 | 1/118 (0.8%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Pelophylax porosus porosus トウキョウダルマガエル | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 2 | 23 | 1/118 (0.8%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Rana kobai アマミアカガエル | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 23 | 3/88 (3.4%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Rana tagoi okiensis オキタゴガエル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 23 | 3/88 (3.4%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Rana tagoi yakushimensis ヤクシマタゴガエル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 23 | 3/88 (3.4%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Rana tsushimensis ツシマアカガエル | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 23 | 3/88 (3.4%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Rana uenoi チョウセンヤマアカガエル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 23 | 3/88 (3.4%) | 14/733 (1.9%) | — |
| NT 準絶滅危惧 | Rana ulma リュウキュウアカガエル | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 23 | 3/88 (3.4%) | 14/733 (1.9%) | — |
| DD 情報不足 | Hynobius retardatus エゾサンショウウオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/132 (0.0%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Acipenser medirostris チョウザメ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 10 | 4/38 (10.5%) | 6/60 (10.0%) | — |
| EX 絶滅 | Gnathopogon elongatus suwae スワモロコ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 16 | 0/13 (0.0%) | 10/349 (2.9%) | — |
| EX 絶滅 | Pungitius kaibarae ミナミトミヨ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 19 | 1/45 (2.2%) | 5/57 (8.8%) | — |
| EW 野生絶滅 | Oncorhynchus kawamurae クニマス | EW | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 23 | 68 | 8/42 (19.0%) | 25/679 (3.7%) | — |
| CR 絶滅危惧IA類 | Echidna rhodochilus ナミダカワウツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/8 (0.0%) | 2/195 (1.0%) | — |
| CR 絶滅危惧IA類 | Uropterygius concolor コゲウツボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/15 (0.0%) | 2/195 (1.0%) | — |
| CR 絶滅危惧IA類 | Acheilognathus cyanostigma イチモンジタナゴ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| CR 絶滅危惧IA類 | Acheilognathus longipinnis イタセンパラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| CR 絶滅危惧IA類 | Acheilognathus tabira jordani ミナミアカヒレタビラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| CR 絶滅危惧IA類 | Acheilognathus tabira nakamurae セボシタビラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| CR 絶滅危惧IA類 | Acheilognathus typus ゼニタナゴ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| CR 絶滅危惧IA類 | Aphyocypris chinensis ヒナモロコ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/9 (0.0%) | 20/208 (9.6%) | — |
| CR 絶滅危惧IA類 | Carassius sp. フナ属の１種（琉球列島） | — | ✓ | — | — | — | No | — | — | — | 0 | 14 | 89 | 3/48 (6.2%) | 51/2361 (2.2%) | — |
| CR 絶滅危惧IA類 | Gnathopogon caerulescens ホンモロコ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/13 (0.0%) | 10/349 (2.9%) | — |
| CR 絶滅危惧IA類 | Ischikauia steenackeri ワタカ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/1 (0.0%) | 20/208 (9.6%) | — |
| CR 絶滅危惧IA類 | Pseudorasbora pugnax ウシモツゴ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 16 | 2/7 (28.6%) | 10/349 (2.9%) | — |
| CR 絶滅危惧IA類 | Pseudorasbora pumila シナイモツゴ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 16 | 2/7 (28.6%) | 10/349 (2.9%) | — |
| CR 絶滅危惧IA類 | Rhodeus atremius suigensis スイゲンゼニタナゴ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/50 (2.0%) | 1/110 (0.9%) | — |
| CR 絶滅危惧IA類 | Rhodeus ocellatus kurumeus ニッポンバラタナゴ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/50 (2.0%) | 1/110 (0.9%) | — |
| CR 絶滅危惧IA類 | Sarcocheilichthys biwaensis アブラヒガイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/15 (0.0%) | 10/349 (2.9%) | — |
| CR 絶滅危惧IA類 | Tanakia tanago ミヤコタナゴ | EN | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/110 (0.9%) | — |
| CR 絶滅危惧IA類 | Cobitis minamorii minamorii サンヨウコガタスジシマドジョウ | — | ✓ | — | — | — | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| CR 絶滅危惧IA類 | Cobitis minamorii yodoensis ヨドコガタスジシマドジョウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| CR 絶滅危惧IA類 | Cobitis striata hakataensis ハカタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| CR 絶滅危惧IA類 | Cobitis takenoi タンゴスジシマドジョウ | CR | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| CR 絶滅危惧IA類 | Parabotia curtus アユモドキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/8 (0.0%) | 6/66 (9.1%) | — |
| CR 絶滅危惧IA類 | Plecoglossus altivelis ryukyuensis リュウキュウアユ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 4 | 4 | 4 | 1/1 (100.0%) | 1/1 (100.0%) | — |
| CR 絶滅危惧IA類 | Neosalanx reganius アリアケヒメシラウオ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 2/30 (6.7%) | 7/56 (12.5%) | — |
| CR 絶滅危惧IA類 | Salanx ariakensis アリアケシラウオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/5 (20.0%) | 7/56 (12.5%) | — |
| CR 絶滅危惧IA類 | Oncorhynchus nerka ベニザケ（ヒメマス） | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 2.65 Gbp 23.0x | 15,727 2.84 Mbp | 2 | 23 | 68 | 8/42 (19.0%) | 25/679 (3.7%) | 2019-06-07 |
| CR 絶滅危惧IA類 | Monopterus sp. タウナギ属の１種（琉球列島） | — | — | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/9 (11.1%) | 1/72 (1.4%) | — |
| CR 絶滅危惧IA類 | Gasterosteus aculeatus subsp. 2 ハリヨ | — | — | — | — | — | No | — | — | — | 10 | 11 | 19 | 2/9 (22.2%) | 5/57 (8.8%) | — |
| CR 絶滅危惧IA類 | Pungitius sp. 3 トミヨ属雄物型 | — | — | — | — | — | No | — | — | — | 0 | 5 | 19 | 1/45 (2.2%) | 5/57 (8.8%) | — |
| CR 絶滅危惧IA類 | Pungitius sp. 4 ムサシトミヨ | — | — | — | — | — | No | — | — | — | 0 | 5 | 19 | 1/45 (2.2%) | 5/57 (8.8%) | — |
| CR 絶滅危惧IA類 | Microphis argulus ホシイッセンヨウジ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 40 | 0/3 (0.0%) | 25/605 (4.1%) | — |
| CR 絶滅危惧IA類 | Microphis jagorii ヒメテングヨウジ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 40 | 1/3 (33.3%) | 25/605 (4.1%) | — |
| CR 絶滅危惧IA類 | Microphis retzii タニヨウジ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 40 | 0/14 (0.0%) | 25/605 (4.1%) | — |
| CR 絶滅危惧IA類 | Cestraeus plicatilis カワボラ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/3 (0.0%) | 6/366 (1.6%) | — |
| CR 絶滅危惧IA類 | Tetraroge barbata アゴヒゲオコゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/27 (3.7%) | — |
| CR 絶滅危惧IA類 | Tetraroge nigra ヒゲソリオコゼ | LC | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/27 (3.7%) | — |
| CR 絶滅危惧IA類 | Yarica hyalosoma カガミテンジクダイ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.03 Gbp 135.0x | 168,358 10.6 kbp | 1 | 4 | 22 | 4/121 (3.3%) | 21/588 (3.6%) | 2024-03-19 |
| CR 絶滅危惧IA類 | Lutjanus goldiei ウラウチフエダイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 6 | 3/122 (2.5%) | 5/330 (1.5%) | — |
| CR 絶滅危惧IA類 | Sillago parvisquamis アオギス | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/108 (0.0%) | 0/117 (0.0%) | — |
| CR 絶滅危惧IA類 | Toxotes jaculatrix テッポウウオ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 622 Mbp 60.0x | 194 15.6 Mbp | 2 | 5 | 5 | 3/7 (42.9%) | 3/7 (42.9%) | 2021-04-15 |
| CR 絶滅危惧IA類 | Mesopristes argenteus ニセシマイサキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 6/56 (10.7%) | — |
| CR 絶滅危惧IA類 | Mesopristes cancellatus ヨコシマイサキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 6/56 (10.7%) | — |
| CR 絶滅危惧IA類 | Mesopristes iravi シミズシマイサキ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 6/56 (10.7%) | — |
| CR 絶滅危惧IA類 | Enneapterygius cheni ウラウチヘビギンポ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/103 (0.0%) | 0/261 (0.0%) | — |
| CR 絶滅危惧IA類 | Omobranchus ferox カワギンポ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/45 (0.0%) | 5/464 (1.1%) | — |
| CR 絶滅危惧IA類 | Omox biporos ヒルギギンポ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Rhyacichthys aspro ツバサハゼ | DD | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 595 Mbp 28.0x | 3,182 1.67 Mbp | 1 | 1 | 1 | 1/2 (50.0%) | 1/3 (33.3%) | 2024-11-08 |
| CR 絶滅危惧IA類 | Butis amboinensis ヤエヤマノコギリハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/11 (0.0%) | 12/288 (4.2%) | — |
| CR 絶滅危惧IA類 | Bathygobius sp. カワクモハゼ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 33 | 0/34 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Callogobius sp. ミスジハゼ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 33 | 0/23 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Cristatogobius aurimaculatus ヒメトサカハゼ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/2 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Cristatogobius nonatoae クロトサカハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/2 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Eviota ocellifer ウラウチイソハゼ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/191 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Glossogobius aureus コンジキハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/73 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Glossogobius bicirrhosus アゴヒゲハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/73 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Gymnogobius isaza イサザ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Gymnogobius nakamurae コシノハゼ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Gymnogobius sp. 2 ホクリクジュズカケハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Lentipes armatus ヨロイボウズハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/14 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Luciogobius albus ドウクツミミズハゼ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/40 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Oxyurichthys takagi シマサルハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/21 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Rhinogobius sp. BB アオバラヨシノボリ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 33 | 1/126 (0.8%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Scartelaos histophorus トカゲハゼ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 695 Mbp 72.0x | 209,353 8.81 kbp | 1 | 1 | 33 | 1/7 (14.3%) | 22/2539 (0.9%) | 2014-12-02 |
| CR 絶滅危惧IA類 | Sicyopus zosterophorus アカボウズハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/9 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Smilosicyopus leprurus カエルハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/6 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Stiphodon alcedo ヒスイボウズハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/29 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Stiphodon atropurpureus コンテリボウズハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/29 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Stiphodon imperiorientis ハヤセボウズハゼ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/29 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Parioglossus interruptus ヒメサツキハゼ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/11 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Parioglossus taeniatus コマチハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/11 (0.0%) | 22/2539 (0.9%) | — |
| CR 絶滅危惧IA類 | Macropodus opercularis タイワンキンギョ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 483 Mbp 150.0x | 151 19.2 Mbp | 2 | 2 | 8 | 1/8 (12.5%) | 3/169 (1.8%) | 2023-05-15 |
| EN 絶滅危惧IB類 | Anguilla japonica ニホンウナギ | EN | ✓ | ✓ | ✓ | ✓ | Yes (8) | Chromosome, Reference | 1.03 Gbp 234.0x | 811 21.5 Mbp | 8 | 19 | 19 | 8/22 (36.4%) | 8/22 (36.4%) | 2014-03-18 |
| EN 絶滅危惧IB類 | Nematalosa japonica ドロクイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 67 | 1/10 (10.0%) | 20/450 (4.4%) | — |
| EN 絶滅危惧IB類 | Coilia nasus エツ | EN | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 852 Mbp 43.0x | 149 26.6 Mbp | 2 | 3 | 8 | 2/13 (15.4%) | 7/244 (2.9%) | 2019-08-16 |
| EN 絶滅危惧IB類 | Abbottina rivularis ツチフキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/5 (0.0%) | 10/349 (2.9%) | — |
| EN 絶滅危惧IB類 | Acheilognathus melanogaster タナゴ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| EN 絶滅危惧IB類 | Acheilognathus tabira erythropterus アカヒレタビラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| EN 絶滅危惧IB類 | Acheilognathus tabira tabira シロヒレタビラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| EN 絶滅危惧IB類 | Acheilognathus tabira tohokuensis キタノアカヒレタビラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/48 (0.0%) | 1/110 (0.9%) | — |
| EN 絶滅危惧IB類 | Biwia yodoensis ヨドゼゼラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/3 (0.0%) | 10/349 (2.9%) | — |
| EN 絶滅危惧IB類 | Carassius buergeri grandoculis ニゴロブナ | — | ✓ | — | ✓ | — | No | — | — | — | 6 | 14 | 89 | 3/48 (6.2%) | 51/2361 (2.2%) | — |
| EN 絶滅危惧IB類 | Carassius cuvieri ゲンゴロウブナ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 89 | 3/48 (6.2%) | 51/2361 (2.2%) | — |
| EN 絶滅危惧IB類 | Hemigrammocypris neglectus カワバタモロコ | LC | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 39 | 0/1 (0.0%) | 20/208 (9.6%) | — |
| EN 絶滅危惧IB類 | Rhodeus atremius atremius カゼトゲタナゴ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/50 (2.0%) | 1/110 (0.9%) | — |
| EN 絶滅危惧IB類 | Tribolodon nakamurai ウケクチウグイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 80 | 1/8 (12.5%) | 42/1258 (3.3%) | — |
| EN 絶滅危惧IB類 | Cobitis kaibarai アリアケスジシマドジョウ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis magnostriata オオガタスジシマドジョウ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis minamorii oumiensis ビワコガタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis minamorii saninensis サンインコガタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis minamorii tokaiensis トウカイコガタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis sakahoko オオヨドシマドジョウ | EN | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis shikokuensis ヒナイシドジョウ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis striata fuchigamii オンガスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Cobitis takatsuensis イシドジョウ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| EN 絶滅危惧IB類 | Lefua costata nikkonis エゾホトケドジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/15 (0.0%) | 10/1066 (0.9%) | — |
| EN 絶滅危惧IB類 | Lefua echigonia ホトケドジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/15 (0.0%) | 10/1066 (0.9%) | — |
| EN 絶滅危惧IB類 | Lefua tokaiensis トウカイナガレホトケドジョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 13 | 0/15 (0.0%) | 10/1066 (0.9%) | — |
| EN 絶滅危惧IB類 | Lefua torrentis ナガレホトケドジョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 13 | 0/15 (0.0%) | 10/1066 (0.9%) | — |
| EN 絶滅危惧IB類 | Tachysurus ichikawai ネコギギ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 12 | 3/37 (8.1%) | 8/253 (3.2%) | — |
| EN 絶滅危惧IB類 | Hucho perryi イトウ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 68 | 0/1 (0.0%) | 25/679 (3.7%) | — |
| EN 絶滅危惧IB類 | Hippichthys heptagonus アミメカワヨウジ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 40 | 0/12 (0.0%) | 25/605 (4.1%) | — |
| EN 絶滅危惧IB類 | Crenimugil heterocheilos ナガレフウライボラ | LC | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/57 (0.0%) | 6/366 (1.6%) | — |
| EN 絶滅危惧IB類 | Lates japonicus アカメ | VU | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 838 Mbp 56.0x | 18,353 286 kbp | 2 | 6 | 6 | 2/19 (10.5%) | 2/40 (5.0%) | 2023-06-29 |
| EN 絶滅危惧IB類 | Coreoperca kawamebari オヤニラミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 12 | 1/4 (25.0%) | 7/18 (38.9%) | — |
| EN 絶滅危惧IB類 | Sillaginops macrolepis アトクギス | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/117 (0.0%) | — |
| EN 絶滅危惧IB類 | Kuhlia munda トゲナガユゴイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/13 (0.0%) | — |
| EN 絶滅危惧IB類 | Cottus reinii カジカ小卵型 | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/154 (1.3%) | 6/353 (1.7%) | — |
| EN 絶滅危惧IB類 | Cottus sp. カジカ中卵型 | — | ✓ | — | — | — | No | — | — | — | 0 | 3 | 9 | 2/154 (1.3%) | 6/353 (1.7%) | — |
| EN 絶滅危惧IB類 | Trachidermus fasciatus ヤマノカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/1 (0.0%) | 6/353 (1.7%) | — |
| EN 絶滅危惧IB類 | Bostrychus sinensis ジャノメハゼ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 886 Mbp 447.8x | 348 28.3 Mbp | 2 | 2 | 15 | 1/4 (25.0%) | 12/288 (4.2%) | 2021-06-03 |
| EN 絶滅危惧IB類 | Giuris sp. 1 タメトモハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 15 | 0/56 (0.0%) | 12/288 (4.2%) | — |
| EN 絶滅危惧IB類 | Giuris sp. 2 ゴシキタメトモハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 15 | 0/56 (0.0%) | 12/288 (4.2%) | — |
| EN 絶滅危惧IB類 | Hypseleotris cyprinoides タナゴモドキ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 15 | 5/53 (9.4%) | 12/288 (4.2%) | — |
| EN 絶滅危惧IB類 | Boleophthalmus pectinirostris ムツゴロウ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 941 Mbp 100.0x | 3,222 835 kbp | 2 | 2 | 33 | 1/17 (5.9%) | 22/2539 (0.9%) | 2014-12-02 |
| EN 絶滅危惧IB類 | Cristatogobius lophius トサカハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/2 (0.0%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Gymnogobius cylindricus キセルハゼ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Gymnogobius scrobiculatus クボハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Gymnogobius sp. 1 ムサシノジュズカケハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Mugilogobius cavifrons ホホグロハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 33 | 1/32 (3.1%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Rhinogobius ogasawaraensis オガサワラヨシノボリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 33 | 1/126 (0.8%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Rhinogobius sp. YB キバラヨシノボリ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 33 | 1/126 (0.8%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Schismatogobius ampluvinculus シマエソハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/12 (0.0%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Schismatogobius roxasi エソハゼ | EN | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/12 (0.0%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Taenioides cirratus チワラスボ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 33 | 1/22 (4.5%) | 22/2539 (0.9%) | — |
| EN 絶滅危惧IB類 | Parioglossus rainfordi コビトハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/11 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Lethenteron japonicum カワヤツメ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 1.07 Gbp 87.8x | 4,710 1.60 Mbp | 2 | 3 | 17 | 2/14 (14.3%) | 8/481 (1.7%) | 2013-09-13 |
| VU 絶滅危惧II類 | Lethenteron sp. N. スナヤツメ北方種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 17 | 2/14 (14.3%) | 8/481 (1.7%) | — |
| VU 絶滅危惧II類 | Lethenteron sp. S. スナヤツメ南方種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 17 | 2/14 (14.3%) | 8/481 (1.7%) | — |
| VU 絶滅危惧II類 | Biwia zezera ゼゼラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/3 (0.0%) | 10/349 (2.9%) | — |
| VU 絶滅危惧II類 | Carassius buergeri subsp. 2 キンブナ | — | — | — | — | — | No | — | — | — | 0 | 14 | 89 | 3/48 (6.2%) | 51/2361 (2.2%) | — |
| VU 絶滅危惧II類 | Opsariichthys uncirostris uncirostris ハス | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 39 | 1/33 (3.0%) | 20/208 (9.6%) | — |
| VU 絶滅危惧II類 | Squalidus chankaensis biwae スゴモロコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/17 (0.0%) | 10/349 (2.9%) | — |
| VU 絶滅危惧II類 | Squalidus japonicus japonicus デメモロコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/17 (0.0%) | 10/349 (2.9%) | — |
| VU 絶滅危惧II類 | Cobitis matsubarae ヤマトシマドジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| VU 絶滅危惧II類 | Cobitis sp. BIWAE type D トサシマドジョウ | — | ✓ | — | — | — | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| VU 絶滅危惧II類 | Cobitis striata striata チュウガタスジシマドジョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 2/238 (0.8%) | 5/456 (1.1%) | — |
| VU 絶滅危惧II類 | Niwaella delicata アジメドジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/5 (0.0%) | 5/456 (1.1%) | — |
| VU 絶滅危惧II類 | Tachysurus aurantiacus アリアケギバチ | NT | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 6 | 12 | 3/37 (8.1%) | 8/253 (3.2%) | — |
| VU 絶滅危惧II類 | Tachysurus tokiensis ギバチ | LC | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 6 | 12 | 3/37 (8.1%) | 8/253 (3.2%) | — |
| VU 絶滅危惧II類 | Liobagrus reinii アカザ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/26 (3.8%) | 1/53 (1.9%) | — |
| VU 絶滅危惧II類 | Salvelinus leucomaenis imbrius ゴギ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 68 | 4/60 (6.7%) | 25/679 (3.7%) | — |
| VU 絶滅危惧II類 | Salvelinus malma krascheninnikovi オショロコマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 68 | 4/60 (6.7%) | 25/679 (3.7%) | — |
| VU 絶滅危惧II類 | Salvelinus malma miyabei ミヤベイワナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 68 | 4/60 (6.7%) | 25/679 (3.7%) | — |
| VU 絶滅危惧II類 | Pungitius tymensis エゾトミヨ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 19 | 1/45 (2.2%) | 5/57 (8.8%) | — |
| VU 絶滅危惧II類 | Oryzias latipes ミナミメダカ | LC | ✓ | ✓ | ✓ | ✓ | Yes (33) | Chromosome, Reference | 734 Mbp 1.0x | 515 2.53 Mbp | 33 | 42 | 43 | 8/91 (8.8%) | 9/94 (9.6%) | 2007-04-26 |
| VU 絶滅危惧II類 | Oryzias sakaizumii キタノメダカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 42 | 43 | 8/91 (8.8%) | 9/94 (9.6%) | — |
| VU 絶滅危惧II類 | Acanthopagrus pacificus ナンヨウチヌ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 2/26 (7.7%) | 10/168 (6.0%) | — |
| VU 絶滅危惧II類 | Cottus kazika カマキリ（アユカケ） | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/1 (0.0%) | 6/353 (1.7%) | — |
| VU 絶滅危惧II類 | Odontobutis hikimius イシドンコ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/8 (0.0%) | 2/17 (11.8%) | — |
| VU 絶滅危惧II類 | Ophiocara porocephala ホシマダラハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/4 (0.0%) | 12/288 (4.2%) | — |
| VU 絶滅危惧II類 | Acanthogobius hasta ハゼクチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/8 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Acanthogobius insularis ミナミアシシロハゼ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/8 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Acentrogobius viridipunctatus キララハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/22 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Apocryptodon punctatus タビラクチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/4 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Caragobius urolepis アサガラハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Gymnogobius macrognathos エドハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Gymnogobius taranetzi シンジコハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Gymnogobius uchidai チクゼンハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Leucopsarion petersii シロウオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Luciogobius ryukyuensis ミナミヒメミミズハゼ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/40 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Mugilogobius mertoni ムジナハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 33 | 1/32 (3.1%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Odontamblyopus lacepedii ワラスボ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 963 Mbp 260.0x | 394 12.1 Mbp | 2 | 3 | 33 | 2/9 (22.2%) | 22/2539 (0.9%) | 2023-10-25 |
| VU 絶滅危惧II類 | Pandaka lidwilli マングローブゴマハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/5 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Pandaka sp. ゴマハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 33 | 0/5 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Parkraemeria saltator ギンポハゼ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Pseudogobius masago マサゴハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/55 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Sicyopterus lagocephalus ルリボウズハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/26 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Trypauchenopsis intermedia ヒゲワラスボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/5 (0.0%) | 22/2539 (0.9%) | — |
| VU 絶滅危惧II類 | Parioglossus palustris ボルネオハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/11 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Lethenteron kessleri シベリアヤツメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 17 | 2/14 (14.3%) | 8/481 (1.7%) | — |
| NT 準絶滅危惧 | Phoxinus perenurus sachalinensis ヤチウグイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 80 | 0/6 (0.0%) | 42/1258 (3.3%) | — |
| NT 準絶滅危惧 | Sarcocheilichthys variegatus variegatus カワヒガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/15 (0.0%) | 10/349 (2.9%) | — |
| NT 準絶滅危惧 | Tanakia lanceolata ヤリタナゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/7 (0.0%) | 1/110 (0.9%) | — |
| NT 準絶滅危惧 | Tanakia limbata アブラボテ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/7 (0.0%) | 1/110 (0.9%) | — |
| NT 準絶滅危惧 | Misgurnus anguillicaudatus ドジョウ | LC | ✓ | ✓ | ✓ | ✓ | Yes (8) | Chromosome, Reference | 1.12 Gbp 30.0x | 170 41.5 Mbp | 8 | 9 | 13 | 2/47 (4.3%) | 5/456 (1.1%) | 2023-01-09 |
| NT 準絶滅危惧 | Silurus lithophilus イワトコナマズ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 11 | 5/18 (27.8%) | 7/75 (9.3%) | — |
| NT 準絶滅危惧 | Hypomesus olidus イシカリワカサギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 10 | 2/6 (33.3%) | 5/14 (35.7%) | — |
| NT 準絶滅危惧 | Oncorhynchus masou ishikawae サツキマス（アマゴ） | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 2.42 Gbp 18.0x | 70,318 128 kbp | 2 | 23 | 68 | 8/42 (19.0%) | 25/679 (3.7%) | 2023-09-10 |
| NT 準絶滅危惧 | Oncorhynchus masou masou サクラマス（ヤマメ） | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.66 Gbp 33.0x | 21,300 2.47 Mbp | 2 | 23 | 68 | 8/42 (19.0%) | 25/679 (3.7%) | 2024-03-01 |
| NT 準絶滅危惧 | Oncorhynchus sp. ビワマス | — | ✓ | — | — | — | No | — | — | — | 0 | 23 | 68 | 8/42 (19.0%) | 25/679 (3.7%) | — |
| NT 準絶滅危惧 | Pungitius sp. 2 トミヨ属汽水型 | — | — | — | — | — | No | — | — | — | 0 | 5 | 19 | 1/45 (2.2%) | 5/57 (8.8%) | — |
| NT 準絶滅危惧 | Hyporhamphus intermedius クルメサヨリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/47 (0.0%) | 1/76 (1.3%) | — |
| NT 準絶滅危惧 | Zenarchopterus dunckeri コモチサヨリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/20 (5.0%) | 1/89 (1.1%) | — |
| NT 準絶滅危惧 | Cottus pollux カジカ大卵型 | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/154 (1.3%) | 6/353 (1.7%) | — |
| NT 準絶滅危惧 | Acentrogobius audax ニセツムギハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/4 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Acentrogobius caninus ホクロハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/22 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Acentrogobius suluensis ホホグロスジハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/22 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Amblygobius linki ワカケサラサハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/14 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Bunaka gyrinoides オウギハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/2 (0.0%) | 12/288 (4.2%) | — |
| NT 準絶滅危惧 | Eugnathogobius mindora カブキハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/7 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Eutaeniichthys gilli ヒモハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Glossogobius circumspectus スダレウロハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/73 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Gymnogobius castaneus ジュズカケハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Luciogobius fluvialis ナガレミミズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/40 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Luciogobius fonticola ユウスイミミズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/40 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Luciogobius pallidus イドミミズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/40 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Periophthalmus modestus トビハゼ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 854 Mbp 95.0x | 4,142 576 kbp | 1 | 6 | 33 | 3/19 (15.8%) | 22/2539 (0.9%) | 2021-08-13 |
| NT 準絶滅危惧 | Rhinogobius telma トウカイヨシノボリ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 33 | 1/126 (0.8%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Rhinogobius tyoni シマヒレヨシノボリ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 33 | 1/126 (0.8%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Silhouettea dotui シラヌイハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/6 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Silhouettea sp. ニセシラヌイハゼ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 33 | 0/6 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Tridentiger barbatus ショウキハゼ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/9 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Tridentiger nudicervicus シロチチブ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/9 (0.0%) | 22/2539 (0.9%) | — |
| NT 準絶滅危惧 | Gobitrichinotus radiocularis ナミノコハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Anguilla bicolor pacifica ニューギニアウナギ | — | ✓ | — | ✓ | ✓ | Yes (1) | Chromosome, Reference | 1.09 Gbp 92.0x | 404 16.9 Mbp | 1 | 19 | 19 | 8/22 (36.4%) | 8/22 (36.4%) | 2024-06-14 |
| DD 情報不足 | Carassius buergeri subsp. 1 ナガブナ | — | — | — | — | — | No | — | — | — | 0 | 14 | 89 | 3/48 (6.2%) | 51/2361 (2.2%) | — |
| DD 情報不足 | Phoxinus lagowskii yamamotis ヤマナカハヤ | — | — | — | — | — | No | — | — | — | 0 | 0 | 80 | 0/6 (0.0%) | 42/1258 (3.3%) | — |
| DD 情報不足 | Misgurnus sp. (Clade A) キタドジョウ | — | — | — | — | — | No | — | — | — | 0 | 9 | 13 | 2/47 (4.3%) | 5/456 (1.1%) | — |
| DD 情報不足 | Misgurnus sp. IR シノビドジョウ | — | ✓ | — | — | — | No | — | — | — | 0 | 9 | 13 | 2/47 (4.3%) | 5/456 (1.1%) | — |
| DD 情報不足 | Misgurnus sp. OK ヒョウモンドジョウ | — | ✓ | — | — | — | No | — | — | — | 0 | 9 | 13 | 2/47 (4.3%) | 5/456 (1.1%) | — |
| DD 情報不足 | Salvelinus leucomaenis pluvius ニッコウイワナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 68 | 4/60 (6.7%) | 25/679 (3.7%) | — |
| DD 情報不足 | Chelon subviridis アンピンボラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 9 | 1/138 (0.7%) | 6/366 (1.6%) | — |
| DD 情報不足 | Ellochelon vaigiensis オニボラ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 647 Mbp 60.0x | 137,715 24.2 kbp | 1 | 1 | 9 | 1/4 (25.0%) | 6/366 (1.6%) | 2024-08-08 |
| DD 情報不足 | Moolgarda engeli モンナシボラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/57 (0.0%) | 6/366 (1.6%) | — |
| DD 情報不足 | Moolgarda pedaraki カマヒレボラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/8 (0.0%) | 6/366 (1.6%) | — |
| DD 情報不足 | Atherinomorus duodecimalis ネッタイイソイワシ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 11 | 1/32 (3.1%) | 9/118 (7.6%) | — |
| DD 情報不足 | Hypoatherina temminckii ミナミギンイソイワシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/17 (0.0%) | 9/118 (7.6%) | — |
| DD 情報不足 | Ambassis interrupta ナンヨウタカサゴイシモチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/46 (2.2%) | 2/71 (2.8%) | — |
| DD 情報不足 | Ambassis macracanthus ハナダカタカサゴイシモチ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/46 (2.2%) | 2/71 (2.8%) | — |
| DD 情報不足 | Epinephelus bontoides シラヌイハタ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 15 | 40 | 11/135 (8.1%) | 29/690 (4.2%) | — |
| DD 情報不足 | Fibramia lateralis ワキイシモチ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.16 Gbp 60.0x | 464,460 4.68 kbp | 1 | 1 | 22 | 1/3 (33.3%) | 21/588 (3.6%) | 2024-08-15 |
| DD 情報不足 | Pseudamia amblyuroptera ヒルギヌメリテンジクダイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 22 | 1/6 (16.7%) | 21/588 (3.6%) | — |
| DD 情報不足 | Plectorhinchus albovittatus ダイダイコショウダイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/31 (0.0%) | 3/185 (1.6%) | — |
| DD 情報不足 | Omobranchus elongatus ゴマクモギンポ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/45 (0.0%) | 5/464 (1.1%) | — |
| DD 情報不足 | Pseudocalliurichthys ikedai ナリタイトヒキヌメリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/1 (0.0%) | 5/129 (3.9%) | — |
| DD 情報不足 | Belobranchus belobranchus エリトゲハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/3 (0.0%) | 12/288 (4.2%) | — |
| DD 情報不足 | Glossogobius sp. フタゴハゼ | — | — | — | — | — | No | — | — | — | 0 | 0 | 33 | 0/73 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Gymnogobius mororanus ヘビハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Luciogobius dormitoris ネムリミミズハゼ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/40 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Mugilogobius fuscus フタホシハゼ | LC | — | ✓ | — | ✓ | No | — | — | — | 0 | 4 | 33 | 1/32 (3.1%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Pseudogobius gastrospilos コクチスナゴハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/55 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Redigobius balteatus タスキヒナハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/10 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Rhinogobius biwaensis ビワヨシノボリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 33 | 1/126 (0.8%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Sicyopus auxilimentus ヒノコロモボウズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/9 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Stenogobius ophthalmoporus ドウケハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/12 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Stiphodon multisquamus トラフボウズハゼ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/29 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Stiphodon niraikanaiensis ニライカナイボウズハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/29 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Stiphodon surrufus カキイロヒメボウズハゼ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/29 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Kraemeria tongaensis トンガスナハゼ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/2 (0.0%) | — |
| DD 情報不足 | Parioglossus caeruleolineatus クジャクハゼ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/11 (0.0%) | 22/2539 (0.9%) | — |
| DD 情報不足 | Parioglossus lineatus マイコハゼ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/11 (0.0%) | 22/2539 (0.9%) | — |
| LP 絶滅のおそれの ある地域個体群 | Entosphenus tridentatus 栃木県のミツバヤツメ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 928 Mbp 43.0x | 204,728 19.6 kbp | 2 | 2 | 17 | 1/8 (12.5%) | 8/481 (1.7%) | 2020-10-05 |
| LP 絶滅のおそれの ある地域個体群 | Clupea pallasii 本州の太平洋側湖沼系群のニシン | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 33 | 67 | 1/4 (25.0%) | 20/450 (4.4%) | — |
| LP 絶滅のおそれの ある地域個体群 | Cyprinus carpio 琵琶湖のコイ在来型 | VU | ✓ | ✓ | ✓ | ✓ | Yes (11) | Chromosome, Reference | 1.68 Gbp 184.8x | 19,837 1.56 Mbp | 11 | 11 | 89 | 1/16 (6.2%) | 51/2361 (2.2%) | 2014-11-03 |
| LP 絶滅のおそれの ある地域個体群 | Tribolodon brandtii brandtii 本州のジュウサンウグイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 1 | 80 | 1/8 (12.5%) | 42/1258 (3.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Tribolodon sachalinensis 東北地方のエゾウグイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 80 | 1/8 (12.5%) | 42/1258 (3.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Spirinchus lanceolatus 襟裳岬以西のシシャモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/3 (0.0%) | 5/14 (35.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Salvelinus leucomaenis japonicus 紀伊半島のヤマトイワナ（キリクチ） | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 6 | 68 | 4/60 (6.7%) | 25/679 (3.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Gasterosteus aculeatus subsp. 1 福島県以南の太平洋系陸封型イトヨ | — | — | — | — | — | No | — | — | — | 10 | 11 | 19 | 2/9 (22.2%) | 5/57 (8.8%) | — |
| LP 絶滅のおそれの ある地域個体群 | Gasterosteus nipponicus 本州のニホンイトヨ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 600 Mbp 17.8x | 3,718 545 kbp | 1 | 11 | 19 | 2/9 (22.2%) | 5/57 (8.8%) | 2020-07-29 |
| LP 絶滅のおそれの ある地域個体群 | Pungitius sp. 1 本州のトミヨ属淡水型 | — | — | — | — | — | No | — | — | — | 0 | 5 | 19 | 1/45 (2.2%) | 5/57 (8.8%) | — |
| LP 絶滅のおそれの ある地域個体群 | Lateolabrax japonicus 有明海のスズキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 1/8 (12.5%) | 1/8 (12.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Cottus hangiongensis 東北・北陸地方のカンキョウカジカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/154 (1.3%) | 6/353 (1.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Cottus nozawae 東北地方のハナカジカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 9 | 2/154 (1.3%) | 6/353 (1.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Gymnogobius petschiliensis 北海道南部・東北地方のスミウキゴリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/25 (0.0%) | 22/2539 (0.9%) | — |
| LP 絶滅のおそれの ある地域個体群 | Takifugu alboplumbeus 沖縄島のクサフグ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 12 | 4/43 (9.3%) | 8/203 (3.9%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Ishikawatrechus intermedius カドタメクラチビゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Rakantrechus elegans コゾノメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Prodaticus satoi スジゲンゴロウ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/43 (0.0%) | 1/2967 (0.0%) | — |
| EX 絶滅 | Macroplea japana キイロネクイハムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 104 | 0/6 (0.0%) | 57/6890 (0.8%) | — |
| CR 絶滅危惧IA類 | Erythromma humerale アカメイトトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/4 (0.0%) | 4/888 (0.5%) | — |
| CR 絶滅危惧IA類 | Indolestes boninensis オガサワラアオイトトンボ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/85 (0.0%) | — |
| CR 絶滅危惧IA類 | Hemicordulia ogasawarensis オガサワラトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/185 (0.0%) | — |
| CR 絶滅危惧IA類 | Libellula angelina ベッコウトンボ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/21 (0.0%) | 5/631 (0.8%) | — |
| CR 絶滅危惧IA類 | Orthetrum poecilops ミヤジマトンボ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/35 (0.0%) | 5/631 (0.8%) | — |
| CR 絶滅危惧IA類 | Celes akitanus アカハネバッタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/3 (0.0%) | 8/1873 (0.4%) | — |
| CR 絶滅危惧IA類 | Ogasawaracris gloriosus マボロシオオバッタ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Oxya ogasawarensis オガサワライナゴ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/17 (0.0%) | 8/1873 (0.4%) | — |
| CR 絶滅危惧IA類 | Platypleura albivannata イシガキニイニイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/62 (0.0%) | 3/1219 (0.2%) | — |
| CR 絶滅危惧IA類 | Diplonychus rusticus タイワンコオイムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/12 (0.0%) | 1/235 (0.4%) | — |
| CR 絶滅危惧IA類 | Lethocerus indicus タイワンタガメ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 427 Mbp 60.0x | 502 5.90 Mbp | 1 | 1 | 1 | 1/16 (6.2%) | 1/235 (0.4%) | 2021-09-01 |
| CR 絶滅危惧IA類 | Laccotrephes grossus タイワンタイコウチ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/11 (0.0%) | 1/55 (1.8%) | — |
| CR 絶滅危惧IA類 | Aphelocheirus kawamurae カワムラナベブタムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/16 (0.0%) | — |
| CR 絶滅危惧IA類 | Carabus arrowianus kirimurai ミカワオサムシ御浜町亜種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| CR 絶滅危惧IA類 | Chlaenius praefectus アオヘリアオゴミムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/50 (0.0%) | 23/6449 (0.4%) | — |
| CR 絶滅危惧IA類 | Cylindera bonina オガサワラハンミョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/67 (0.0%) | 23/6449 (0.4%) | — |
| CR 絶滅危惧IA類 | Oodes virens オオヒラタトックリゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/5 (0.0%) | 23/6449 (0.4%) | — |
| CR 絶滅危惧IA類 | Pterostichus yokohamae ヨコハマナガゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 4 | 38 | 2/289 (0.7%) | 23/6449 (0.4%) | — |
| CR 絶滅危惧IA類 | Copelatus parallelus コセスジゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/468 (0.0%) | 1/2967 (0.0%) | — |
| CR 絶滅危惧IA類 | Cybister lewisianus マルコガタノゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/40 (0.0%) | 1/2967 (0.0%) | — |
| CR 絶滅危惧IA類 | Cybister limbatus フチトリゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/40 (0.0%) | 1/2967 (0.0%) | — |
| CR 絶滅危惧IA類 | Dytiscus sharpi シャープゲンゴロウモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/29 (0.0%) | 1/2967 (0.0%) | — |
| CR 絶滅危惧IA類 | Hydaticus thermonectoides マダラシマゲンゴロウ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/31 (0.0%) | 1/2967 (0.0%) | — |
| CR 絶滅危惧IA類 | Hyphydrus orientalis ニセコケシゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| CR 絶滅危惧IA類 | Rhantaticus congestus マダラゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/1 (0.0%) | 1/2967 (0.0%) | — |
| CR 絶滅危惧IA類 | Gyrinus ryukyuensis リュウキュウヒメミズスマシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/284 (0.0%) | — |
| CR 絶滅危惧IA類 | Quedius kiuchii リュウノイワヤツヤムネハネカクシ | — | — | — | ✓ | — | No | — | — | — | 0 | 2 | 62 | 1/289 (0.3%) | 50/6959 (0.7%) | — |
| CR 絶滅危惧IA類 | Neolucanus insulicola donan ヨナグニマルバネクワガタ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/33 (0.0%) | 4/393 (1.0%) | — |
| CR 絶滅危惧IA類 | Oryctes hisamatsui ヒサマツサイカブト | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 62 | 2/14 (14.3%) | 41/4854 (0.8%) | — |
| CR 絶滅危惧IA類 | Chrysobothris boninensis suzukii オガサワラムツボシタマムシ母島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/34 (0.0%) | 5/721 (0.7%) | — |
| CR 絶滅危惧IA類 | Tamamushia virida fujitai ツマベニタマムシ聟島亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Luciola owadai クメジマボタル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/2 (0.0%) | 7/628 (1.1%) | — |
| CR 絶滅危惧IA類 | Glipa asahinai キンモンオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Glipa kurosawai クロサワオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Glipa ogasawarensis オガサワラオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Hoshihananomia katoi boninensis ニセキボシハナノミ小笠原亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Hoshihananomia kusuii クスイキボシハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| CR 絶滅危惧IA類 | Agapanthia japonica フサヒゲルリカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/15 (0.0%) | 20/3106 (0.6%) | — |
| CR 絶滅危惧IA類 | Boninella anoplos ケズネオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Boninella hirsuta アラゲオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Boninella igai ヒメオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Boninella satoi masatakai サトウオガサワラカミキリ母島亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Bonipogonius fujitai ヒゲシロアラゲカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Phytoecia coeruleomicans アオキクスイカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/18 (0.0%) | 20/3106 (0.6%) | — |
| CR 絶滅危惧IA類 | Xylotrechus takakuwai ミイロトラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/60 (0.0%) | 20/3106 (0.6%) | — |
| CR 絶滅危惧IA類 | Donacia frontalis アオノネクイハムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 104 | 0/62 (0.0%) | 57/6890 (0.8%) | — |
| CR 絶滅危惧IA類 | Ogasawarazo daitoensis ダイトウスジヒメカタゾウムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Ogasawarazo rugosicephalus hahajimaensis ヒメカタゾウムシ母島亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Orussus boninensis オガサワラヤドリキバチ | — | — | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/7 (14.3%) | 1/12 (8.3%) | — |
| CR 絶滅危惧IA類 | Chrysis boninensis オガサワラセイボウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/216 (0.0%) | 1/489 (0.2%) | — |
| CR 絶滅危惧IA類 | Aphaenogaster gamagumayaa ガマアシナガアリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 131 | 7/280 (2.5%) | 99/17141 (0.6%) | — |
| CR 絶滅危惧IA類 | Pison tosawai チチジマピソン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/20 (0.0%) | 11/1455 (0.8%) | — |
| CR 絶滅危惧IA類 | Anopheles yatsushiroensis ヤツシロハマダラカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 105 | 150 | 42/1144 (3.7%) | 62/3754 (1.7%) | — |
| CR 絶滅危惧IA類 | Simulium yonakuniense ヨナクニウォレスブユ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1857 (0.0%) | 0/2202 (0.0%) | — |
| CR 絶滅危惧IA類 | Carterocephalus palaemon akaishianus タカネキマダラセセリ赤石山脈亜種 | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 5 | 474 | 3/15 (20.0%) | 406/3087 (13.2%) | — |
| CR 絶滅危惧IA類 | Pyrgus malvae unomasahiroi ヒメチャマダラセセリ | — | ✓ | ✓ | — | — | No | — | — | — | 2 | 18 | 474 | 9/39 (23.1%) | 406/3087 (13.2%) | — |
| CR 絶滅危惧IA類 | Pieris canidia kaolicola タイワンモンシロチョウ対馬・朝鮮半島亜種 | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 16 | 79 | 6/57 (10.5%) | 37/910 (4.1%) | — |
| CR 絶滅危惧IA類 | Antigius butleri kurinodakensis ウスイロオナガシジミ鹿児島県栗野岳亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 91 | 0/2 (0.0%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Celastrina ogasawaraensis オガサワラシジミ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 2 | 91 | 1/20 (5.0%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Everes lacturnus lacturnus タイワンツバメシジミ名義タイプ亜種, 琉球亜種 | — | — | — | ✓ | — | No | — | — | — | 0 | 6 | 91 | 3/16 (18.8%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Japonica onoi mizobei カシワアカシジミ（キタアカシジミ）冠高原亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 91 | 0/5 (0.0%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Phengaris teleius kazamoto ゴマシジミ関東・中部亜種 | — | ✓ | — | — | — | No | — | — | — | 0 | 3 | 91 | 2/11 (18.2%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Pithecops fulgens tsushimanus ツシマウラボシシジミ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 91 | 0/4 (0.0%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Plebejus subsolanus iburiensis アサマシジミ北海道亜種 | — | — | — | — | — | No | — | — | — | 0 | 6 | 91 | 4/65 (6.2%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Shijimia moorei moorei ゴイシツバメシジミ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 91 | 0/1 (0.0%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Shijimiaeoides divinus barine オオルリシジミ本州亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 91 | 0/1 (0.0%) | 47/2686 (1.7%) | — |
| CR 絶滅危惧IA類 | Coenonympha oedippus annulifer ヒメヒカゲ長野県・群馬県亜種 | — | — | ✓ | — | — | No | — | — | — | 1 | 11 | 766 | 6/36 (16.7%) | 221/5384 (4.1%) | — |
| CR 絶滅危惧IA類 | Fabriciana nerippe オオウラギンヒョウモン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 766 | 1/10 (10.0%) | 221/5384 (4.1%) | — |
| CR 絶滅危惧IA類 | Melitaea protomedia ウスイロヒョウモンモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 26 | 766 | 12/150 (8.0%) | 221/5384 (4.1%) | — |
| CR 絶滅危惧IA類 | Melitaea scotosia ヒョウモンモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 26 | 766 | 12/150 (8.0%) | 221/5384 (4.1%) | — |
| CR 絶滅危惧IA類 | Oeneis norna sugitanii タカネヒカゲ八ヶ岳亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 4 | 766 | 2/32 (6.2%) | 221/5384 (4.1%) | — |
| CR 絶滅危惧IA類 | Sebastosema bubonaria カバシタムクゲエダシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Oxytrypia orbiculosa ミヨタトラヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Sideridis incommoda アサギリヨトウ（キシダムラサキヨトウ） | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 377 | 0/19 (0.0%) | 183/7138 (2.6%) | — |
| CR 絶滅危惧IA類 | Sinocharis korbae ノシメコヤガ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/1 (0.0%) | 183/7138 (2.6%) | — |
| EN 絶滅危惧IB類 | Mortonagrion hirosei ヒヌマイトトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/7 (0.0%) | 4/888 (0.5%) | — |
| EN 絶滅危惧IB類 | Paracercion plagiosum オオセスジイトトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/9 (0.0%) | 4/888 (0.5%) | — |
| EN 絶滅危惧IB類 | Copera tokyoensis オオモノサシトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/3 (0.0%) | 1/115 (0.9%) | — |
| EN 絶滅危惧IB類 | Lestes japonicus コバネアオイトトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/58 (0.0%) | 0/85 (0.0%) | — |
| EN 絶滅危惧IB類 | Rhinocypha ogasawarensis ハナダカトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/9 (11.1%) | 1/49 (2.0%) | — |
| EN 絶滅危惧IB類 | Anaciaeschna jaspidea トビイロヤンマ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/251 (0.0%) | — |
| EN 絶滅危惧IB類 | Rhyothemis severini ハネナガチョウトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/7 (0.0%) | 5/631 (0.8%) | — |
| EN 絶滅危惧IB類 | Sympetrum flaveolum flaveolum エゾアカネ | — | — | — | — | — | No | — | — | — | 0 | 4 | 7 | 2/113 (1.8%) | 5/631 (0.8%) | — |
| EN 絶滅危惧IB類 | Sympetrum maculatum マダラナニワトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 7 | 2/113 (1.8%) | 5/631 (0.8%) | — |
| EN 絶滅危惧IB類 | Sympetrum uniforme オオキトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 7 | 2/113 (1.8%) | 5/631 (0.8%) | — |
| EN 絶滅危惧IB類 | Zyxomma obtusum コフキオオメトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/3 (0.0%) | 5/631 (0.8%) | — |
| EN 絶滅危惧IB類 | Galloisiana notabilis イシイムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/27 (0.0%) | 0/170 (0.0%) | — |
| EN 絶滅危惧IB類 | Ilyocoris cimicoides exclamationis コバンムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/260 (0.0%) | — |
| EN 絶滅危惧IB類 | Abroscelis anchoralis イカリモンハンミョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/1 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Awatrechus hygrobius リュウノメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Bembidion nakamurai サツマキバナガミズギワゴミムシ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/511 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Carabus kolbei hanatanii アイヌキンオサムシ利尻島亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Chaetodera laetescripta カワラハンミョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/3 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Chaetotrechiama procerus ケバネメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Chlaenius ikedai オガサワラアオゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/50 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Cicindela lewisi ルイスハンミョウ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 38 | 0/312 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Colpodes laetus オガサワラモリヒラタゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/10 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Colpodes yamaguchii ハハジマモリヒラタゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/10 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Drypta fulveola キイロホソゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/3 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Elaphrus punctatus コハンミョウモドキ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/15 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Elaphrus sugai ワタラセハンミョウモドキ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/15 (0.0%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Eochlaenius suvorovi チビアオゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Haplochlaenius insularis アマミスジアオゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Nebria livida angulata キベリマルクビゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 38 | 3/198 (1.5%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Nebria pulcherrima フタモンマルクビゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 5 | 38 | 3/198 (1.5%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Pterostichus plesiomorphs アマミナガゴミムシ | — | — | — | — | — | No | — | — | — | 0 | 4 | 38 | 2/289 (0.7%) | 23/6449 (0.4%) | — |
| EN 絶滅危惧IB類 | Rakantrechus lallum ツヅラセメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Rakantrechus mirabilis ウスケメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Stygiotrechus kadanus タカモリメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Stygiotrechus kitayamai キタヤマメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Suzuka masuzoi マスゾウメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Trechiama abcuma アブクマナガチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Trechiama morii カダメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Trechiama nakaoi ナカオメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Trechiama oopterus スリカミメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Haliplus kamiyai カミヤコガシラミズムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/56 (0.0%) | 0/81 (0.0%) | — |
| EN 絶滅危惧IB類 | Neohydrocoptus bivittis キボシチビコツブゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/123 (0.0%) | — |
| EN 絶滅危惧IB類 | Phreatodytes elongatus ギフムカシゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| EN 絶滅危惧IB類 | Phreatodytes latiusculus カガミムカシゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| EN 絶滅危惧IB類 | Phreatodytes sublimbatus トサムカシゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| EN 絶滅危惧IB類 | Acilius kishii ヤシャゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/14 (0.0%) | 1/2967 (0.0%) | — |
| EN 絶滅危惧IB類 | Hydaticus pacificus conspersus オオイチモンジシマゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/31 (0.0%) | 1/2967 (0.0%) | — |
| EN 絶滅危惧IB類 | Laccophilus vagelineatus キタノツブゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/61 (0.0%) | 1/2967 (0.0%) | — |
| EN 絶滅危惧IB類 | Morimotoa gigantea オオメクラゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Morimotoa morimotoi トサメクラゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Gyrinus curtus コミズスマシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/284 (0.0%) | — |
| EN 絶滅危惧IB類 | Gyrinus gestroi ヒメミズスマシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/284 (0.0%) | — |
| EN 絶滅危惧IB類 | Hydrochus aequalis ホソガムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/36 (2.8%) | 1/36 (2.8%) | — |
| EN 絶滅危惧IB類 | Helophorus auriculatus セスジガムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/51 (0.0%) | 0/53 (0.0%) | — |
| EN 絶滅危惧IB類 | Laccobius bedeli シジミガムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/34 (0.0%) | 6/1284 (0.5%) | — |
| EN 絶滅危惧IB類 | Liparocephalus tokunagai オオズウミハネカクシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/3 (0.0%) | 50/6959 (0.7%) | — |
| EN 絶滅危惧IB類 | Neolucanus protogenetivus hamaii ウケジママルバネクワガタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/33 (0.0%) | 4/393 (1.0%) | — |
| EN 絶滅危惧IB類 | Cheirotonus jambar ヤンバルテナガコガネ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/3 (0.0%) | 41/4854 (0.8%) | — |
| EN 絶滅危惧IB類 | Graphelmis shirahatai アヤスジミゾドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/12 (0.0%) | 1/528 (0.2%) | — |
| EN 絶滅危惧IB類 | Optioservus hagai ハガマルヒメドロムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/30 (0.0%) | 1/528 (0.2%) | — |
| EN 絶滅危惧IB類 | Zaitzevia rufa アカツヤドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/15 (0.0%) | 1/528 (0.2%) | — |
| EN 絶滅危惧IB類 | Lucidina okadai コクロオバボタル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/7 (0.0%) | 7/628 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhagophthalmus ohbai イリオモテボタル | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 1 | 1/9 (11.1%) | 1/22 (4.5%) | — |
| EN 絶滅危惧IB類 | Tomoxia relicta オガサワラモンハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/431 (0.0%) | — |
| EN 絶滅危惧IB類 | Variimorda inomatai オガサワラキンオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| EN 絶滅危惧IB類 | Variimorda maiae shoui マイキンオビハナノミ母島亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| EN 絶滅危惧IB類 | Boninella karubei ムコジマオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Chlorophorus kusamai ムコジマトラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/44 (0.0%) | 20/3106 (0.6%) | — |
| EN 絶滅危惧IB類 | Chlorophorus masatakai ムコジマキイロトラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/44 (0.0%) | 20/3106 (0.6%) | — |
| EN 絶滅危惧IB類 | Peblephaeus nobuoi ノブオフトカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/3 (0.0%) | 20/3106 (0.6%) | — |
| EN 絶滅危惧IB類 | Pseudiphra bicolor nigripennis フタモンアメイロカミキリ母島列島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| EN 絶滅危惧IB類 | Stenygrinum quadrinotatum ヨツボシカミキリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| EN 絶滅危惧IB類 | Simulium satsumense サツマツノマユブユ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1857 (0.0%) | 0/2202 (0.0%) | — |
| EN 絶滅危惧IB類 | Symmerus akikoae ヒメケヅメカ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/34 (2.9%) | 6/6776 (0.1%) | — |
| EN 絶滅危惧IB類 | Hydrotaea glabricula イソメマトイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 31 | 2/65 (3.1%) | 15/5685 (0.3%) | — |
| EN 絶滅危惧IB類 | Sarcophaga yonahaensis ヨナハニクバエ | — | — | — | ✓ | — | No | — | — | — | 0 | 13 | 18 | 7/450 (1.6%) | 11/1502 (0.7%) | — |
| EN 絶滅危惧IB類 | Scalarignathia montis ミスジコスカシバ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Aeromachus inachus inachus ホシチャバネセセリ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 1 | 474 | 1/11 (9.1%) | 406/3087 (13.2%) | — |
| EN 絶滅危惧IB類 | Hesperia florinda florinda アカセセリ | — | — | — | — | — | No | — | — | — | 0 | 3 | 474 | 2/29 (6.9%) | 406/3087 (13.2%) | — |
| EN 絶滅危惧IB類 | Parnara ogasawarensis オガサワラセセリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 474 | 1/11 (9.1%) | 406/3087 (13.2%) | — |
| EN 絶滅危惧IB類 | Pyrgus maculatus maculatus チャマダラセセリ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 18 | 474 | 9/39 (23.1%) | 406/3087 (13.2%) | — |
| EN 絶滅危惧IB類 | Aporia hippia japonica ミヤマシロチョウ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 2 | 79 | 1/42 (2.4%) | 37/910 (4.1%) | — |
| EN 絶滅危惧IB類 | Eurema laeta betheseba ツマグロキチョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 79 | 2/48 (4.2%) | 37/910 (4.1%) | — |
| EN 絶滅危惧IB類 | Gonepteryx maxima maxima ヤマキチョウ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 79 | 0/12 (0.0%) | 37/910 (4.1%) | — |
| EN 絶滅危惧IB類 | Leptidea amurensis ヒメシロチョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 79 | 3/11 (27.3%) | 37/910 (4.1%) | — |
| EN 絶滅危惧IB類 | Everes lacturnus kawaii タイワンツバメシジミ日本本土亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 6 | 91 | 3/16 (18.8%) | 47/2686 (1.7%) | — |
| EN 絶滅危惧IB類 | Niphanda fusca クロシジミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 91 | 0/3 (0.0%) | 47/2686 (1.7%) | — |
| EN 絶滅危惧IB類 | Phengaris teleius daisensis ゴマシジミ中国地方・九州亜種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 91 | 2/11 (18.2%) | 47/2686 (1.7%) | — |
| EN 絶滅危惧IB類 | Plebejus argyrognomon praeterinsularis ミヤマシジミ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 6 | 91 | 4/65 (6.2%) | 47/2686 (1.7%) | — |
| EN 絶滅危惧IB類 | Plebejus subsolanus yaginus アサマシジミ本州亜種 | — | — | — | — | — | No | — | — | — | 0 | 6 | 91 | 4/65 (6.2%) | 47/2686 (1.7%) | — |
| EN 絶滅危惧IB類 | Shijimiaeoides divinus asonis オオルリシジミ九州亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 91 | 0/1 (0.0%) | 47/2686 (1.7%) | — |
| EN 絶滅危惧IB類 | Zizina emelina シルビアシジミ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 91 | 0/3 (0.0%) | 47/2686 (1.7%) | — |
| EN 絶滅危惧IB類 | Coenonympha oedippus arothius ヒメヒカゲ本州中部・近畿・中国地方亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 11 | 766 | 6/36 (16.7%) | 221/5384 (4.1%) | — |
| EN 絶滅危惧IB類 | Lethe marginalis クロヒカゲモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 766 | 0/41 (0.0%) | 221/5384 (4.1%) | — |
| EN 絶滅危惧IB類 | Melitaea ambigua niphona コヒョウモンモドキ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 26 | 766 | 12/150 (8.0%) | 221/5384 (4.1%) | — |
| EN 絶滅危惧IB類 | Brabira kasaii チャホシホソバナミシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 277 | 0/1 (0.0%) | 140/11801 (1.2%) | — |
| EN 絶滅危惧IB類 | Epirrhoe hastulata echigoensis ヒトスジシロナミシャク本州亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 277 | 2/15 (13.3%) | 140/11801 (1.2%) | — |
| EN 絶滅危惧IB類 | Heterophleps endoi サキシマウスクモナミシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 277 | 0/5 (0.0%) | 140/11801 (1.2%) | — |
| EN 絶滅危惧IB類 | Isturgia arenacearia ソトオビエダシャク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 277 | 1/22 (4.5%) | 140/11801 (1.2%) | — |
| EN 絶滅危惧IB類 | Chersotis deplanata ヒメカクモンヤガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/14 (0.0%) | 183/7138 (2.6%) | — |
| EN 絶滅危惧IB類 | Condica illustrata ヘリグロヒメヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/55 (0.0%) | 183/7138 (2.6%) | — |
| EN 絶滅危惧IB類 | Cymatophoropsis trimaculata ミツモンケンモン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 94 | 0/3 (0.0%) | 46/8395 (0.5%) | — |
| EN 絶滅危惧IB類 | Dasypolia fani オガサワラヒゲヨトウ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 377 | 1/6 (16.7%) | 183/7138 (2.6%) | — |
| EN 絶滅危惧IB類 | Lacanobia aliena オイワケクロヨトウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 377 | 2/24 (8.3%) | 183/7138 (2.6%) | — |
| EN 絶滅危惧IB類 | Leucapamea hikosana クロコシロヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/1 (0.0%) | 183/7138 (2.6%) | — |
| EN 絶滅危惧IB類 | Paraphyllophila confusa ミスズコヤガ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Staurophora celsia コンゴウミドリヨトウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/1 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Coenagrion hylas カラフトイトトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/27 (0.0%) | 4/888 (0.5%) | — |
| VU 絶滅危惧II類 | Ischnura ezoin オガサワライトトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 9 | 2/99 (2.0%) | 4/888 (0.5%) | — |
| VU 絶滅危惧II類 | Pseudagrion microcephalum アオナガイトトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/55 (0.0%) | 4/888 (0.5%) | — |
| VU 絶滅危惧II類 | Stylurus annulatus オオサカサナエ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/14 (0.0%) | 0/491 (0.0%) | — |
| VU 絶滅危惧II類 | Stylurus nagoyanus ナゴヤサナエ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/14 (0.0%) | 0/491 (0.0%) | — |
| VU 絶滅危惧II類 | Stylurus oculatus メガネサナエ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/14 (0.0%) | 0/491 (0.0%) | — |
| VU 絶滅危惧II類 | Chlorogomphus brunneus keramensis アサトカラスヤンマ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/25 (0.0%) | 0/31 (0.0%) | — |
| VU 絶滅危惧II類 | Chlorogomphus okinawensis オキナワミナミヤンマ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/25 (0.0%) | 0/31 (0.0%) | — |
| VU 絶滅危惧II類 | Hemicordulia mindana nipponica ミナミトンボ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/185 (0.0%) | — |
| VU 絶滅危惧II類 | Macromidia ishidai サキシマヤマトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/185 (0.0%) | — |
| VU 絶滅危惧II類 | Somatochlora clavata ハネビロエゾトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/185 (0.0%) | — |
| VU 絶滅危惧II類 | Boninthemis insularis シマアカネ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 5/631 (0.8%) | — |
| VU 絶滅危惧II類 | Sympetrum gracile ナニワトンボ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 7 | 2/113 (1.8%) | 5/631 (0.8%) | — |
| VU 絶滅危惧II類 | Nocticola uenoi miyakoensis ミヤコホラアナゴキブリ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/42 (0.0%) | 0/74 (0.0%) | — |
| VU 絶滅危惧II類 | Trypetimorpha japonica ハウチワウンカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/44 (0.0%) | — |
| VU 絶滅危惧II類 | Euterpnosia chibensis daitoensis ダイトウヒメハルゼミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/10 (0.0%) | 3/1219 (0.2%) | — |
| VU 絶滅危惧II類 | Muda kuroiwae クロイワゼミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/1219 (0.2%) | — |
| VU 絶滅危惧II類 | Suisha coreana チョウセンケナガニイニイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/1219 (0.2%) | — |
| VU 絶滅危惧II類 | Cacopsylla boninofatsiae ムニンヤツデキジラミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/118 (0.0%) | 2/591 (0.3%) | — |
| VU 絶滅危惧II類 | Cacopsylla maculipennis チャマダラキジラミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/118 (0.0%) | 2/591 (0.3%) | — |
| VU 絶滅危惧II類 | Elatobium itoe ツツジコブアブラムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 76 | 0/4 (0.0%) | 40/5096 (0.8%) | — |
| VU 絶滅危惧II類 | Hemipodaphis persimilis ケヤキワタムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Unisitobion corylicola ハシバミヒゲナガアブラムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Hydrometra albolineata イトアメンボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/12 (0.0%) | 0/16 (0.0%) | — |
| VU 絶滅危惧II類 | Xiphovelia boninensis ケブカオヨギカタビロアメンボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Asclepios shiranui シオアメンボ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/3 (0.0%) | 2/348 (0.6%) | — |
| VU 絶滅危惧II類 | Halobates matsumurai シロウミアメンボ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 3 | 0/36 (0.0%) | 2/348 (0.6%) | — |
| VU 絶滅危惧II類 | Limnometra femorata トゲアシアメンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/14 (0.0%) | 2/348 (0.6%) | — |
| VU 絶滅危惧II類 | Kirkaldyia deyrolli タガメ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/235 (0.4%) | — |
| VU 絶滅危惧II類 | Aphelocheirus nawae トゲナベブタムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/16 (0.0%) | — |
| VU 絶滅危惧II類 | Heterotrephes admorsus エグリタマミズムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Kitocoris hahajima ハハジマハナカメムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Myiophanes tipulina ゴミアシナガサシガメ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 8 | 0/1 (0.0%) | 6/1683 (0.4%) | — |
| VU 絶滅危惧II類 | Ptilocerus immitis フサヒゲサシガメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/3 (0.0%) | 6/1683 (0.4%) | — |
| VU 絶滅危惧II類 | Triatoma rubrofasciata オオサシガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 8 | 3/129 (2.3%) | 6/1683 (0.4%) | — |
| VU 絶滅危惧II類 | Dicranocephalus medius ブチヒゲツノヘリカメムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/12 (0.0%) | — |
| VU 絶滅危惧II類 | Bembidion aestuarii キバネキバナガミズギワゴミムシ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/511 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Bembidion sumaoi オオキバナガミズギワゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/511 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Callytron inspecularis ヨドシロヘリハンミョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/3 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Carabus granulatus telluris アカガネオサムシ本州亜種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Carabus maacki aquatilis マークオサムシ本州亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Carabus macleayi amanoi マックレイセアカオサムシ利尻島亜種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Carabus maeander nobukii セスジアカガネオサムシ大雪山パルサ湿原亜種 | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Carabus maiyasanus ohkawai マヤサンオサムシ鵜方亜種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Carabus porrecticollis pacificus アキタクロナガオサムシ富士亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Carabus uenoi ドウキョウオサムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Chlaenius spoliatus motschulskyi ツヤキベリアオゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/50 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Cychrus morawitzi iwatensis セダカオサムシ岩手県亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/26 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Cylindera gracilis ホソハンミョウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/67 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Daiconotrechus iwatai イワタメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Diplocheila elongata スナハラゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/6 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Harpalus crates チョウセンゴモクムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 4 | 38 | 2/93 (2.2%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Jujiroa ana ジャアナヒラタゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/1 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Kusumia australis コカシメクラチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Lophyridia sumatrensis niponensis ハラビロハンミョウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 38 | / | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Morion boninense オガサワラクチキゴミムシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 38 | 0/4 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Morion japonicum クチキゴミムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 38 | 0/4 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Paratachys gyotokuensis ギョウトクコミズギワゴミムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 38 | 0/15 (0.0%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Pterostichus isumiensis イスミナガゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 4 | 38 | 2/289 (0.7%) | 23/6449 (0.4%) | — |
| VU 絶滅危惧II類 | Trechiama paucisaeta モニワメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Yamautidius anaulax アオナミメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Haliplus basinotatus クロホシコガシラミズムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/56 (0.0%) | 0/81 (0.0%) | — |
| VU 絶滅危惧II類 | Haliplus eximius キイロコガシラミズムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/56 (0.0%) | 0/81 (0.0%) | — |
| VU 絶滅危惧II類 | Haliplus sharpi マダラコガシラミズムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/56 (0.0%) | 0/81 (0.0%) | — |
| VU 絶滅危惧II類 | Canthydrus politus ムツボシツヤコツブゲンゴロウ | — | — | ✓ | — | ✓ | No | — | — | — | 0 | 0 | 0 | 0/12 (0.0%) | 0/123 (0.0%) | — |
| VU 絶滅危惧II類 | Neohydrocoptus sp. ムモンチビコツブゲンゴロウ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/123 (0.0%) | — |
| VU 絶滅危惧II類 | Copelatus nakamurai トダセスジゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/468 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Cybister chinensis ゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/40 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Cybister rugosus ヒメフチトリゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/40 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Cybister tripunctatus lateralis コガタノゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/40 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Dytiscus marginalis czerskii エゾゲンゴロウモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/29 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Graphoderus adamsii マルガタゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/13 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Hyphydrus laeviventris laeviventris ヒメケシゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Laccophilus lewisius ルイスツブゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/61 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Laccophilus nakajimai ナカジマツブゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/61 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Nebrioporus hostilis コシマチビゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/50 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Prodaticus vittatus オキナワスジゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/43 (0.0%) | 1/2967 (0.0%) | — |
| VU 絶滅危惧II類 | Gyrinus japonicus ミズスマシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/284 (0.0%) | — |
| VU 絶滅危惧II類 | Orectochilus agilis ツマキレオナガミズスマシ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/15 (0.0%) | 0/284 (0.0%) | — |
| VU 絶滅危惧II類 | Orectochilus punctipennis コオナガミズスマシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/15 (0.0%) | 0/284 (0.0%) | — |
| VU 絶滅危惧II類 | Hydrochus chubu チュウブホソガムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/36 (2.8%) | 1/36 (2.8%) | — |
| VU 絶滅危惧II類 | Georissus granulosus セスジマルドロムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/15 (0.0%) | 0/16 (0.0%) | — |
| VU 絶滅危惧II類 | Hydrophilus bilineatus cashimirensis コガタガムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 6 | 0/26 (0.0%) | 6/1284 (0.5%) | — |
| VU 絶滅危惧II類 | Ctenistes oculatus クシヒゲアリヅカムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Thiasophila shinanonis ヤマアリヤドリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/1 (0.0%) | 50/6959 (0.7%) | — |
| VU 絶滅危惧II類 | Dorcus hopei binodulosus オオクワガタ | — | ✓ | ✓ | — | — | No | — | — | — | 1 | 3 | 5 | 2/23 (8.7%) | 4/393 (1.0%) | — |
| VU 絶滅危惧II類 | Dorcus titanus daitoensis ダイトウヒラタクワガタ | — | — | ✓ | ✓ | — | No | — | — | — | 1 | 1 | 5 | 1/11 (9.1%) | 4/393 (1.0%) | — |
| VU 絶滅危惧II類 | Dorcus titanus hachijoensis ハチジョウヒラタクワガタ | — | — | — | — | — | No | — | — | — | 1 | 1 | 5 | 1/11 (9.1%) | 4/393 (1.0%) | — |
| VU 絶滅危惧II類 | Neolucanus okinawanus オキナワマルバネクワガタ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/33 (0.0%) | 4/393 (1.0%) | — |
| VU 絶滅危惧II類 | Neolucanus protogenetivus protogenetivus アマミマルバネクワガタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/33 (0.0%) | 4/393 (1.0%) | — |
| VU 絶滅危惧II類 | Platycerus viridicuprus kanadai キュウシュウコルリクワガタ（ニシコルリクワガタ九州亜種） | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/48 (0.0%) | 4/393 (1.0%) | — |
| VU 絶滅危惧II類 | Omorgus chinensis オオコブスジコガネ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/29 (0.0%) | 0/96 (0.0%) | — |
| VU 絶滅危惧II類 | Aphodius gotoi ツヤケシマグソコガネ | — | — | — | ✓ | — | No | — | — | — | 0 | 7 | 62 | 4/218 (1.8%) | 41/4854 (0.8%) | — |
| VU 絶滅危惧II類 | Copris brachypterus マルダイコクコガネ | — | — | — | ✓ | — | No | — | — | — | 0 | 1 | 62 | 1/40 (2.5%) | 41/4854 (0.8%) | — |
| VU 絶滅危惧II類 | Copris ochus ダイコクコガネ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 62 | 1/40 (2.5%) | 41/4854 (0.8%) | — |
| VU 絶滅危惧II類 | Onthophagus gibbulus チャバネエンマコガネ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 4 | 62 | 2/301 (0.7%) | 41/4854 (0.8%) | — |
| VU 絶滅危惧II類 | Onthophagus yakuinsulanus ヤクシマエンマコガネ | — | — | — | ✓ | — | No | — | — | — | 0 | 4 | 62 | 2/301 (0.7%) | 41/4854 (0.8%) | — |
| VU 絶滅危惧II類 | Leptelmis gracilis ヨコミゾドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/8 (0.0%) | 1/528 (0.2%) | — |
| VU 絶滅危惧II類 | Orientelmis parvula セマルヒメドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/1 (0.0%) | 1/528 (0.2%) | — |
| VU 絶滅危惧II類 | Pseudamophilus japonicus ケスジドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/1 (0.0%) | 1/528 (0.2%) | — |
| VU 絶滅危惧II類 | Sinonychus satoi サトウカラヒメドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/2 (0.0%) | 1/528 (0.2%) | — |
| VU 絶滅危惧II類 | Chrysobothris boninensis boninensis オガサワラムツボシタマムシ父島列島亜種 | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 7 | 0/34 (0.0%) | 5/721 (0.7%) | — |
| VU 絶滅危惧II類 | Tamamushia virida virida ツマベニタマムシ父島・母島列島亜種 | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Anadastus pulchelloides オビヒメコメツキモドキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/320 (0.0%) | — |
| VU 絶滅危惧II類 | Ermischiella nigriceps ズグロヒメハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Falsomordellistena formosana boninensis ボニンヒメハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| VU 絶滅危惧II類 | Falsomordellistena pseudalpigena ニセミヤマヒメハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| VU 絶滅危惧II類 | Falsomordellistena rosseoloides ニセチャイロヒメハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| VU 絶滅危惧II類 | Falsomordellistena watanabei ワタナベヒメハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/431 (0.0%) | — |
| VU 絶滅危惧II類 | Hoshihananomia ochrothorax キムネキボシハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| VU 絶滅危惧II類 | Hoshihananomia trichopalpis オガサワラキボシハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| VU 絶滅危惧II類 | Variimorda hiromiae ロミキンオビハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| VU 絶滅危惧II類 | Agapanthia sakaii ミチノクケマダラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/15 (0.0%) | 20/3106 (0.6%) | — |
| VU 絶滅危惧II類 | Allotraeus boninensis オガサワラトビイロカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/5 (0.0%) | 20/3106 (0.6%) | — |
| VU 絶滅危惧II類 | Boninella satoi satoi サトウオガサワラカミキリ父島列島亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Boninella takakuwai ケブカオガサワラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Ceresium simile simile チャイロヒメカミキリ小笠原亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/9 (0.0%) | 20/3106 (0.6%) | — |
| VU 絶滅危惧II類 | Diboma costata オキナワサビカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Macropidonia ruficollis アカムネハナカミキリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| VU 絶滅危惧II類 | Mesosa hirtiventris ケハラゴマフカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/17 (0.0%) | 20/3106 (0.6%) | — |
| VU 絶滅危惧II類 | Nortia kusuii オガサワラムネスジウスバカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| VU 絶滅危惧II類 | Pseudiphra bicolor bicolor フタモンアメイロカミキリ父島列島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| VU 絶滅危惧II類 | Thyestilla gebleri アサカミキリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| VU 絶滅危惧II類 | Ogasawarazo mater ハハジマヒメカタゾウムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Megaxyela togashii オオナギナタハバチ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/24 (0.0%) | 0/107 (0.0%) | — |
| VU 絶滅危惧II類 | Chrysis nohirai ノヒラセイボウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/216 (0.0%) | 1/489 (0.2%) | — |
| VU 絶滅危惧II類 | Formica yessensis エゾアカヤマアリ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 131 | 5/3058 (0.2%) | 99/17141 (0.6%) | — |
| VU 絶滅危惧II類 | Polyrhachis lamellidens トゲアリ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 131 | 0/368 (0.0%) | 99/17141 (0.6%) | — |
| VU 絶滅危惧II類 | Pararrhynchium oceanicum miyanoi ツヤカバフドロバチ母島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 31 | 0/6 (0.0%) | 21/1092 (1.9%) | — |
| VU 絶滅危惧II類 | Bembix niponica ニッポンハナダカバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/40 (0.0%) | 11/1455 (0.8%) | — |
| VU 絶滅危惧II類 | Isodontia boninensis オガサワラアナバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/237 (0.0%) | — |
| VU 絶滅危惧II類 | Lestica rufigaster オガサワラギングチバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/6 (0.0%) | 11/1455 (0.8%) | — |
| VU 絶滅危惧II類 | Pison hahadzimaense ハハジマピソン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/20 (0.0%) | 11/1455 (0.8%) | — |
| VU 絶滅危惧II類 | Stizus pulcherrimus キアシハナダカバチモドキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/12 (0.0%) | 11/1455 (0.8%) | — |
| VU 絶滅危惧II類 | Tachysphex morosus titidzimaensis チチジマヌカダカバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/187 (0.0%) | 11/1455 (0.8%) | — |
| VU 絶滅危惧II類 | Hylaeus boninensis オガサワラメンハナバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 2/288 (0.7%) | 4/780 (0.5%) | — |
| VU 絶滅危惧II類 | Hylaeus ikedai イケダメンハナバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 2/288 (0.7%) | 4/780 (0.5%) | — |
| VU 絶滅危惧II類 | Hylaeus incomitatus キムネメンハナバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 2/288 (0.7%) | 4/780 (0.5%) | — |
| VU 絶滅危惧II類 | Hylaeus yasumatsui ヤスマツメンハナバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 2/288 (0.7%) | 4/780 (0.5%) | — |
| VU 絶滅危惧II類 | Lithurgus ogasawarensis オガサワラキホリハナバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/7 (0.0%) | 12/1122 (1.1%) | — |
| VU 絶滅危惧II類 | Megachile asahinai アサヒナハキリバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 10 | 20 | 6/298 (2.0%) | 12/1122 (1.1%) | — |
| VU 絶滅危惧II類 | Ceratina boninensis オガサワラツヤハナバチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 125 | 3/388 (0.8%) | 84/3777 (2.2%) | — |
| VU 絶滅危惧II類 | Neohapalothrix kanii カニギンモンアミカ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Deuterophlebia nipponica ニホンアミカモドキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/9 (0.0%) | — |
| VU 絶滅危惧II類 | Hyperoscelis eximia insignis キスジモモブトモリカ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/2 (0.0%) | — |
| VU 絶滅危惧II類 | Hyperoscelis veternosa クロモモブトモリカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/2 (0.0%) | — |
| VU 絶滅危惧II類 | Hilarimorpha nigra クロオドリバエモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/7 (0.0%) | — |
| VU 絶滅危惧II類 | Microdon katsurai ケンランアリノスアブ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 134 | 1/62 (1.6%) | 65/4690 (1.4%) | — |
| VU 絶滅危惧II類 | Sarcophila japonica ゴヘイニクバエ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/6 (0.0%) | 11/1502 (0.7%) | — |
| VU 絶滅危惧II類 | Macroscelesia longipes yamatoensis アシナガモモブトスカシバ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Zygaena niphona hakodatensis ベニモンマダラ道南亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 17 | 22 | 9/97 (9.3%) | 12/421 (2.9%) | — |
| VU 絶滅危惧II類 | Ochlodes subhyalinus asahinai アサヒナキマダラセセリ | — | — | — | — | — | No | — | — | — | 0 | 2 | 474 | 1/23 (4.3%) | 406/3087 (13.2%) | — |
| VU 絶滅危惧II類 | Parnara bada ヒメイチモンジセセリ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 474 | 1/11 (9.1%) | 406/3087 (13.2%) | — |
| VU 絶滅危惧II類 | Luehdorfia japonica ギフチョウ | NT | ✓ | ✓ | ✓ | ✓ | Yes (1) | Contig, Reference | 507 Mbp 1.7x | 569,973 1.33 kbp | 1 | 3 | 108 | 2/5 (40.0%) | 76/556 (13.7%) | 2021-05-03 |
| VU 絶滅危惧II類 | Anthocharis cardamines hayashii クモマツマキチョウ八ヶ岳・南アルプス亜種 | — | ✓ | — | — | — | No | — | — | — | 2 | 4 | 79 | 2/17 (11.8%) | 37/910 (4.1%) | — |
| VU 絶滅危惧II類 | Coreana raphaelis yamamotoi チョウセンアカシジミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 91 | 0/1 (0.0%) | 47/2686 (1.7%) | — |
| VU 絶滅危惧II類 | Japonica onoi onoi カシワアカシジミ（キタアカシジミ）名義タイプ亜種, 北海道・東北地方亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 91 | 0/5 (0.0%) | 47/2686 (1.7%) | — |
| VU 絶滅危惧II類 | Panchala ganesa loomisi ルーミスシジミ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 91 | 0/69 (0.0%) | 47/2686 (1.7%) | — |
| VU 絶滅危惧II類 | Phengaris teleius hosonoi ゴマシジミ中部高地帯亜種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 91 | 2/11 (18.2%) | 47/2686 (1.7%) | — |
| VU 絶滅危惧II類 | Plebejus subsolanus yarigadakeanus アサマシジミ本州高地亜種 | — | — | — | — | — | No | — | — | — | 0 | 6 | 91 | 4/65 (6.2%) | 47/2686 (1.7%) | — |
| VU 絶滅危惧II類 | Zizeeria karsandra ハマヤマトシジミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 91 | 0/2 (0.0%) | 47/2686 (1.7%) | — |
| VU 絶滅危惧II類 | Argyronome laodice japonica ウラギンスジヒョウモン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 766 | 4/38 (10.5%) | 221/5384 (4.1%) | — |
| VU 絶滅危惧II類 | Brenthis daphne rabdia ヒョウモンチョウ本州中部亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 3 | 766 | 3/4 (75.0%) | 221/5384 (4.1%) | — |
| VU 絶滅危惧II類 | Lasiommata deidamia kampuzana ツマジロウラジャノメ四国亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 766 | 0/3 (0.0%) | 221/5384 (4.1%) | — |
| VU 絶滅危惧II類 | Limenitis populi jezoensis オオイチモンジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 7 | 766 | 4/33 (12.1%) | 221/5384 (4.1%) | — |
| VU 絶滅危惧II類 | Ypthima multistriata niphonica ウラナミジャノメ日本本土亜種 | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 766 | 0/49 (0.0%) | 221/5384 (4.1%) | — |
| VU 絶滅危惧II類 | Amraica kimurai サキシマオオエダシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 277 | 0/5 (0.0%) | 140/11801 (1.2%) | — |
| VU 絶滅危惧II類 | Archiearis notha okanoi クロフカバシャク | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 277 | 0/3 (0.0%) | 140/11801 (1.2%) | — |
| VU 絶滅危惧II類 | Hypoxystis pulcheraria アキヨシトガリエダシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 277 | 0/2 (0.0%) | 140/11801 (1.2%) | — |
| VU 絶滅危惧II類 | Gastropacha quercifolia ヒロバカレハ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 15 | 0/7 (0.0%) | 10/588 (1.7%) | — |
| VU 絶滅危惧II類 | Hemaris radians スキバホウジャク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 27 | 1/16 (6.2%) | 16/1402 (1.1%) | — |
| VU 絶滅危惧II類 | Laelia miyanoi ミヤノスゲドクガ | — | — | ✓ | — | ✓ | No | — | — | — | 0 | 0 | 94 | 0/13 (0.0%) | 46/8395 (0.5%) | — |
| VU 絶滅危惧II類 | Capsula aerata ガマヨトウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 377 | 0/3 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Capsula sparganii キスジウスキヨトウ | — | ✓ | — | ✓ | — | Yes (2) | Chromosome, Reference | 677 Mbp 31.0x | 134 11.4 Mbp | 2 | 2 | 377 | 1/3 (33.3%) | 183/7138 (2.6%) | 2023-03-10 |
| VU 絶滅危惧II類 | Chasmina takakuwai オガサワラシロガ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 377 | 0/8 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Chilodes pacificus ヌマベウスキヨトウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 377 | 0/1 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Doerriesa coenosa キュウシュウスジヨトウ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Doerriesa striata エゾスジヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Eulocastra sasakii シラユキコヤガ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 377 | 0/6 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Nonagria puengeleri オオチャバネヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/1 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Plusilla rosalia ギンモンアカヨトウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/1 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Protodeltote wiscotti マガリスジコヤガ | — | — | ✓ | — | — | No | — | — | — | 0 | 2 | 377 | 1/3 (33.3%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Pseudohermonassa velata エゾクシヒゲモンヤガ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 377 | 0/3 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Xylomoia fusei イチモジヒメヨトウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/7 (0.0%) | 183/7138 (2.6%) | — |
| VU 絶滅危惧II類 | Xylomoia graminea クシロモクメヨトウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/7 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Oligoneuriella rhenana ヒトリガカゲロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/47 (0.0%) | — |
| NT 準絶滅危惧 | Chiusanophlebia asahinai リュウキュウトビイロカゲロウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Ephoron eophilum アカツキシロカゲロウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/21 (0.0%) | — |
| NT 準絶滅危惧 | Ephoron limnobium ビワコシロカゲロウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/21 (0.0%) | — |
| NT 準絶滅危惧 | Agriocnemis pygmaea ヒメイトトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/21 (0.0%) | 4/888 (0.5%) | — |
| NT 準絶滅危惧 | Ceriagrion nipponicum ベニイトトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 9 | 1/31 (3.2%) | 4/888 (0.5%) | — |
| NT 準絶滅危惧 | Ischnura aurora aurora キバライトトンボ | — | — | ✓ | — | — | No | — | — | — | 0 | 5 | 9 | 2/99 (2.0%) | 4/888 (0.5%) | — |
| NT 準絶滅危惧 | Mortonagrion selenion モートンイトトンボ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/7 (0.0%) | 4/888 (0.5%) | — |
| NT 準絶滅危惧 | Platycnemis foliacea sasakii グンバイトンボ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/9 (11.1%) | 1/115 (0.9%) | — |
| NT 準絶滅危惧 | Calopteryx japonica アオハダトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/57 (1.8%) | 4/180 (2.2%) | — |
| NT 準絶滅危惧 | Asiagomphus amamiensis amamiensis アマミサナエ | EN | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Asiagomphus amamiensis okinawanus オキナワサナエ | EN | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Asiagomphus pryeri キイロサナエ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Asiagomphus yayeyamensis ヤエヤマサナエ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Trigomphus citimus tabei タベサナエ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/491 (0.0%) | — |
| NT 準絶滅危惧 | Trigomphus interruptus フタスジサナエ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/491 (0.0%) | — |
| NT 準絶滅危惧 | Trigomphus ogumai オグマサナエ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/491 (0.0%) | — |
| NT 準絶滅危惧 | Chlorogomphus iriomotensis イリオモテミナミヤンマ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/25 (0.0%) | 0/31 (0.0%) | — |
| NT 準絶滅危惧 | Aeschna mixta soneharai マダラヤンマ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/74 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Aeschna subarctica subarctica イイジマルリボシヤンマ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/74 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Aeschnophlebia anisoptera ネアカヨシヤンマ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Aeschnophlebia longistigma アオヤンマ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Planaeschna ishigakiana ishigakiana イシガキヤンマ | EN | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Planaeschna ishigakiana nagaminei アマミヤンマ | EN | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Sarasaeschna kunigamiensis オキナワサラサヤンマ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/251 (0.0%) | — |
| NT 準絶滅危惧 | Macromia daimoji キイロヤマトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/25 (0.0%) | 0/30 (0.0%) | — |
| NT 準絶滅危惧 | Macromia kubokaiya オキナワコヤマトンボ | EN | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/25 (0.0%) | 0/30 (0.0%) | — |
| NT 準絶滅危惧 | Macromia urania ヒナヤマトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/25 (0.0%) | 0/30 (0.0%) | — |
| NT 準絶滅危惧 | Diplacodes bipunctatus ベニヒメトンボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 7 | 0/6 (0.0%) | 5/631 (0.8%) | — |
| NT 準絶滅危惧 | Leucorrhinia intermedia ijimai エゾカオジロトンボ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/55 (0.0%) | 5/631 (0.8%) | — |
| NT 準絶滅危惧 | Orthetrum internum タイワンシオヤトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/35 (0.0%) | 5/631 (0.8%) | — |
| NT 準絶滅危惧 | Perlodes frisonanus フライソンアミメカワゲラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/13 (0.0%) | 1/311 (0.3%) | — |
| NT 準絶滅危惧 | Miniperla japonica コカワゲラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Velarifictorus politus ムニンツヅレサセコオロギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/12 (0.0%) | 8/743 (1.1%) | — |
| NT 準絶滅危惧 | Gampsocleis ryukyuensis オキナワキリギリス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/8 (0.0%) | 2/1398 (0.1%) | — |
| NT 準絶滅危惧 | Tanna ishigakiana イシガキヒグラシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/8 (0.0%) | 3/1219 (0.2%) | — |
| NT 準絶滅危惧 | Hiraphora longiceps オガサワラハナダカアワフキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Batracomorphus ogasawarensis オガサワラアオズキンヨコバイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/31 (0.0%) | 12/11985 (0.1%) | — |
| NT 準絶滅危惧 | Glossocratus fukuroki フクロクヨコバイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/5 (0.0%) | 12/11985 (0.1%) | — |
| NT 準絶滅危惧 | Psammotettix kurilensis スナヨコバイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/153 (0.0%) | 12/11985 (0.1%) | — |
| NT 準絶滅危惧 | Celtisaspis japonica エノキカイガラキジラミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/2 (0.0%) | 1/295 (0.3%) | — |
| NT 準絶滅危惧 | Xiphovelia japonica オヨギカタビロアメンボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Gerris babai ババアメンボ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 3 | 3 | 2/43 (4.7%) | 2/348 (0.6%) | — |
| NT 準絶滅危惧 | Limnogonus nitidus ツヤセスジアメンボ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 3 | 0/19 (0.0%) | 2/348 (0.6%) | — |
| NT 準絶滅危惧 | Limnoporus esakii エサキアメンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/7 (0.0%) | 2/348 (0.6%) | — |
| NT 準絶滅危惧 | Neogerris boninensis オガサワラアメンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/9 (0.0%) | 2/348 (0.6%) | — |
| NT 準絶滅危惧 | Hermatobates weddi サンゴアメンボ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/3 (33.3%) | 1/3 (33.3%) | — |
| NT 準絶滅危惧 | Macrosaldula shikokuana オモゴミズギワカメムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/193 (0.0%) | — |
| NT 準絶滅危惧 | Micracanthia boninana オガサワラミズギワカメムシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/193 (0.0%) | — |
| NT 準絶滅危惧 | Micracanthia hasegawai ヒメミズギワカメムシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/193 (0.0%) | — |
| NT 準絶滅危惧 | Appasus japonicus コオイムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/235 (0.4%) | — |
| NT 準絶滅危惧 | Laccotrephes maculatus エサキタイコウチ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/11 (0.0%) | 1/55 (1.8%) | — |
| NT 準絶滅危惧 | Ranatra longipes マダラアシミズカマキリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/27 (3.7%) | 1/55 (1.8%) | — |
| NT 準絶滅危惧 | Cymatia apparens ミゾナシミズムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/233 (0.4%) | — |
| NT 準絶滅危惧 | Hesperocorixa distanti hokkensis ホッケミズムシ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 1 | 0/21 (0.0%) | 1/233 (0.4%) | — |
| NT 準絶滅危惧 | Hesperocorixa kolthoffi オオミズムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/21 (0.0%) | 1/233 (0.4%) | — |
| NT 準絶滅危惧 | Hesperocorixa mandshurica ナガミズムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/21 (0.0%) | 1/233 (0.4%) | — |
| NT 準絶滅危惧 | Xenocorisa vittipennis ミヤケミズムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Notonecta montandoni オキナワマツモムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/30 (0.0%) | 0/108 (0.0%) | — |
| NT 準絶滅危惧 | Lygocorias boninensis オガサワラチャイロカスミカメ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Miyamotoa rubicunda ミヤモトベニカスミカメ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Pseudoloxops miyamotoi クヌギヒイロカスミカメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/27 (0.0%) | 12/3394 (0.4%) | — |
| NT 準絶滅危惧 | Pseudophylus flavipes リンゴクロカスミカメ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 17 | 0/2 (0.0%) | 12/3394 (0.4%) | — |
| NT 準絶滅危惧 | Stenonabis extremus ツマグロマキバサシガメ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/281 (0.0%) | — |
| NT 準絶滅危惧 | Elatophilus nipponensis ヒラタハナカメムシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 5 | 0/3 (0.0%) | 4/204 (2.0%) | — |
| NT 準絶滅危惧 | Kitocoris omura オオムラハナカメムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Lyctocoris beneficus ズイムシハナカメムシ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/9 (0.0%) | — |
| NT 準絶滅危惧 | Xylocoris hiurai クロアシブトハナカメムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 5 | 0/7 (0.0%) | 4/204 (2.0%) | — |
| NT 準絶滅危惧 | Acanthaspis cincticrus ハリサシガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/25 (0.0%) | 6/1683 (0.4%) | — |
| NT 準絶滅危惧 | Caunus noctulus アシボソトビイロサシガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/1 (0.0%) | 6/1683 (0.4%) | — |
| NT 準絶滅危惧 | Coranus spiniscutis ハイイロイボサシガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/18 (0.0%) | 6/1683 (0.4%) | — |
| NT 準絶滅危惧 | Elongicoris takarai タカラサシガメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Gardena boninensis ムニンアシナガサシガメ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/5 (0.0%) | 6/1683 (0.4%) | — |
| NT 準絶滅危惧 | Gardena melinarthrum オオアシナガサシガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/5 (0.0%) | 6/1683 (0.4%) | — |
| NT 準絶滅危惧 | Polytoxus vagans トゲナガユミアシサシガメ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/4 (0.0%) | 6/1683 (0.4%) | — |
| NT 準絶滅危惧 | Sphedanolestes albipilosus ヒメシマサシガメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/24 (0.0%) | 6/1683 (0.4%) | — |
| NT 準絶滅危惧 | Aradus herculeanus オオカバヒラタカメムシ | — | — | — | — | — | No | — | — | — | 0 | 2 | 2 | 1/33 (3.0%) | 1/344 (0.3%) | — |
| NT 準絶滅危惧 | Glochocoris infantulus ケシヒラタカメムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Mezira tremulae ヤセオオヒラタカメムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/13 (0.0%) | 1/344 (0.3%) | — |
| NT 準絶滅危惧 | Clerada apicicornis ミナミナガカメムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Peritrechus femoralis ハマベナガカメムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/360 (0.0%) | — |
| NT 準絶滅危惧 | Poeantius lineatus アシナガナガカメムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/360 (0.0%) | — |
| NT 準絶滅危惧 | Scolopostethus odoriko オドリコナガカメムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/360 (0.0%) | — |
| NT 準絶滅危惧 | Canthophorus niveimarginatus シロヘリツチカメムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/130 (0.0%) | — |
| NT 準絶滅危惧 | Brachymna tenuis ヒラタトガリカメムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 16 | 0/1 (0.0%) | 10/798 (1.3%) | — |
| NT 準絶滅危惧 | Dalpada cinctipes ツシマキボシカメムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 16 | 0/12 (0.0%) | 10/798 (1.3%) | — |
| NT 準絶滅危惧 | Plautia cyanoviridis ルリカメムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 16 | 0/9 (0.0%) | 10/798 (1.3%) | — |
| NT 準絶滅危惧 | Rhynchocoris humeralis ミカントゲカメムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 16 | 0/1 (0.0%) | 10/798 (1.3%) | — |
| NT 準絶滅危惧 | Bembidion tsutsuii ツツイキバナガミズギワゴミムシ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/511 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Bembidion umi ウミミズギワゴミムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/511 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Callytron yuasai okinawensis オキナワシロヘリハンミョウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 38 | 0/3 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Callytron yuasai yuasai シロヘリハンミョウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/3 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Carabus arboreus ohminensis コクロナガオサムシ大峰山脈亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Carabus tuberculosus セアカオサムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 38 | 3/431 (0.7%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Ceratoderus venustus クロオビヒゲブトオサムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/2 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Chlaenius deliciolus ヒトツメアオゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/50 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Chlaenius sulcicollis クマガイクロアオゴミムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/50 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Cicindela gemmata aino アイヌハンミョウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/312 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Diplocheila macromandibularis フトキバスナハラゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/6 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Oodes echigonus エチゴトックリゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/5 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Oodes vicarius オオトックリゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/5 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Perileptus morimotoi ウミホソチビゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/7 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Peronomerus auripilis イグチケブカゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/1 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Pogonus itoshimaensis ドウイロハマベゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 1 | 38 | 1/11 (9.1%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Pogonus japonicus ハマベゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 38 | 1/11 (9.1%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Scarites sulcatus オオヒョウタンゴミムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/17 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Thalassoduvalius masidai kurosai ナンカイイソチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/1 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Thalassoduvalius masidai masidai イソチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/1 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Thalassoduvalius masidai pacificus イズイソチビゴミムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/1 (0.0%) | 23/6449 (0.4%) | — |
| NT 準絶滅危惧 | Haliplus kotoshonis コウトウコガシラミズムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/56 (0.0%) | 0/81 (0.0%) | — |
| NT 準絶滅危惧 | Agabus affinis オクエゾクロマメゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/137 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Allopachria bimaculata フタキボシケシゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/2 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Cybister brevis クロゲンゴロウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/40 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Graphoderus zonatus カラフトマルガタゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/13 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hydaticus conspersus sakishimanus リュウキュウオオイチモンジシマゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/31 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hydrovatus acuminatus コマルケシゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hydrovatus bonvouloiri オオマルケシゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hydrovatus pumilus チビマルケシゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hydrovatus seminarius アマミマルケシゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hydrovatus subtilis マルケシゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hydrovatus yagii ヤギマルケシゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hyphydrus japonicus ケシゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Hyphydrus laeviventris tsugaru アラメケシゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Ilybius apicalis キベリクロヒメゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/81 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Japanolaccophilus nipponensis キボシツブゲンゴロウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/1 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Laccophilus kobensis コウベツブゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/61 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Laccophilus sharpi シャープツブゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/61 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Leiodytes frontalis マルチビゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/17 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Platambus fimbriatus キベリマメゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/16 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Prodaticus bowringii シマゲンゴロウ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/43 (0.0%) | 1/2967 (0.0%) | — |
| NT 準絶滅危惧 | Dineutus australis ツマキレオオミズスマシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/62 (0.0%) | 0/284 (0.0%) | — |
| NT 準絶滅危惧 | Dineutus mellyi mellyi タイワンオオミズスマシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/62 (0.0%) | 0/284 (0.0%) | — |
| NT 準絶滅危惧 | Dineutus orientalis オオミズスマシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/62 (0.0%) | 0/284 (0.0%) | — |
| NT 準絶滅危惧 | Orectochilus villosus エゾコオナガミズスマシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/15 (0.0%) | 0/284 (0.0%) | — |
| NT 準絶滅危惧 | Hydraena iheya イヘヤダルマガムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/251 (0.0%) | 0/817 (0.0%) | — |
| NT 準絶滅危惧 | Hydraena yonaguniensis ヨナグニダルマガムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/251 (0.0%) | 0/817 (0.0%) | — |
| NT 準絶滅危惧 | Ochthebius amami アマミセスジダルマガムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/278 (0.0%) | 0/817 (0.0%) | — |
| NT 準絶滅危惧 | Hydrochus japonicus ヤマトホソガムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/36 (2.8%) | 1/36 (2.8%) | — |
| NT 準絶滅危惧 | Enochrus subsignatus マルヒラタガムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 6 | 1/62 (1.6%) | 6/1284 (0.5%) | — |
| NT 準絶滅危惧 | Helochares nipponicus スジヒラタガムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/88 (1.1%) | 6/1284 (0.5%) | — |
| NT 準絶滅危惧 | Horelophopsis hanseni クロシオガムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/1 (0.0%) | 6/1284 (0.5%) | — |
| NT 準絶滅危惧 | Hydrochara libera エゾコガムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/17 (0.0%) | 6/1284 (0.5%) | — |
| NT 準絶滅危惧 | Hydrophilus acuminatus ガムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/26 (0.0%) | 6/1284 (0.5%) | — |
| NT 準絶滅危惧 | Hydrophilus dauricus エゾガムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/26 (0.0%) | 6/1284 (0.5%) | — |
| NT 準絶滅危惧 | Laccobius inopinus ミユキシジミガムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 6 | 0/34 (0.0%) | 6/1284 (0.5%) | — |
| NT 準絶滅危惧 | Nicrophorus japonicus ヤマトモンシデムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 5 | 7 | 3/60 (5.0%) | 4/136 (2.9%) | — |
| NT 準絶滅危惧 | Lucanus gamunus ミクラミヤマクワガタ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/56 (0.0%) | 4/393 (1.0%) | — |
| NT 準絶滅危惧 | Neolucanus insulicola insulicola ヤエヤママルバネクワガタ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/33 (0.0%) | 4/393 (1.0%) | — |
| NT 準絶滅危惧 | Prismognathus dauricus キンオニクワガタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/7 (0.0%) | 4/393 (1.0%) | — |
| NT 準絶滅危惧 | Trox mitis マルコブスジコガネ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/33 (0.0%) | 0/96 (0.0%) | — |
| NT 準絶滅危惧 | Aphodius kiuchii ダイセツマグソコガネ | — | — | — | ✓ | — | No | — | — | — | 0 | 7 | 62 | 4/218 (1.8%) | 41/4854 (0.8%) | — |
| NT 準絶滅危惧 | Aphodius languidulus キバネマグソコガネ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 62 | 4/218 (1.8%) | 41/4854 (0.8%) | — |
| NT 準絶滅危惧 | Aphodius sturmi ヒメキイロマグソコガネ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 62 | 4/218 (1.8%) | 41/4854 (0.8%) | — |
| NT 準絶滅危惧 | Aphodius variabilis クロモンマグソコガネ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 62 | 4/218 (1.8%) | 41/4854 (0.8%) | — |
| NT 準絶滅危惧 | Onthophagus japonicus ヤマトエンマコガネ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 4 | 62 | 2/301 (0.7%) | 41/4854 (0.8%) | — |
| NT 準絶滅危惧 | Onthophagus ocellatopunctatus アラメエンマコガネ | — | — | — | ✓ | — | No | — | — | — | 0 | 4 | 62 | 2/301 (0.7%) | 41/4854 (0.8%) | — |
| NT 準絶滅危惧 | Osmoderma opicum オオチャイロハナムグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/11 (9.1%) | 41/4854 (0.8%) | — |
| NT 準絶滅危惧 | Nipponeubria yoshitomii ヒゲナガヒラタドロムシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Kurosawaia yanoi ツヤヒメマルタマムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Campsosternus nobuoi ノブオオオアオコメツキ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 36 | 0/14 (0.0%) | 20/1656 (1.2%) | — |
| NT 準絶滅危惧 | Pyrocoelia miyako ミヤコマドボタル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/31 (3.2%) | 7/628 (1.1%) | — |
| NT 準絶滅危惧 | Variimorda ihai boninensis ヨツモンハナノミ小笠原亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/431 (0.0%) | — |
| NT 準絶滅危惧 | Blaps japonensis ヤマトオサムシダマシ | — | — | ✓ | — | — | No | — | — | — | 0 | 1 | 42 | 1/72 (1.4%) | 18/2316 (0.8%) | — |
| NT 準絶滅危惧 | Acalolepta boninensis オガサワラビロウドカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/19 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Acalolepta degener ヒメビロウドカミキリ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/19 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Ceresium signaticolle クロモンヒメカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/9 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Chlorophorus boninensis オガサワラトラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/44 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Chlorophorus kobayashii オガサワラキイロトラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/44 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Merionoeda tosawai オガサワラモモブトコバネカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/4 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Mesosa rufa オガサワラゴマフカミキリ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 33 | 0/17 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Nobuosciades lanata ケズネケシカミキリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Plagionotus pulcher コトラカミキリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/6 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Psephactus scabripennis chichijimensis オガサワラコバネカミキリ父島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Psephactus scabripennis scabripennis オガサワラコバネカミキリ母島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Pterolophia kubokii ススキサビカミキリ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/20 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Ropalopus signaticollis クロヒラタカミキリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/6 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Xylotrechus ogasawarensis オガサワライカリモントラカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/60 (0.0%) | 20/3106 (0.6%) | — |
| NT 準絶滅危惧 | Chrysolina virgata オオルリハムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 8 | 104 | 4/84 (4.8%) | 57/6890 (0.8%) | — |
| NT 準絶滅危惧 | Donacia hirtihumeralis アカガネネクイハムシ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 104 | 0/62 (0.0%) | 57/6890 (0.8%) | — |
| NT 準絶滅危惧 | Donacia japana キンイロネクイハムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 104 | 0/62 (0.0%) | 57/6890 (0.8%) | — |
| NT 準絶滅危惧 | Pyrrhalta nigromarginata クロヘリウスチャハムシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 104 | 0/15 (0.0%) | 57/6890 (0.8%) | — |
| NT 準絶滅危惧 | Ogasawarazo lineatus スジヒメカタゾウムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Ogasawarazo rugosicephalus rugosicephalus ヒメカタゾウムシ父島列島亜種 | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Neocolochelyna itoi イトウハバチ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 22 | 0/2 (0.0%) | 14/4348 (0.3%) | — |
| NT 準絶滅危惧 | Selandria konoi コウノハバチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 22 | 0/2 (0.0%) | 14/4348 (0.3%) | — |
| NT 準絶滅危惧 | Euurobracon yokahamae ウマノオバチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 56 | 0/4 (0.0%) | 38/24832 (0.2%) | — |
| NT 準絶滅危惧 | Pristaulacus boninensis オガサワラセダカヤセバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/31 (0.0%) | — |
| NT 準絶滅危惧 | Gasteruption ogasawarensis オガサワラコンボウヤセバチ | — | — | — | — | — | No | — | — | — | 0 | 2 | 2 | 1/162 (0.6%) | 1/185 (0.5%) | — |
| NT 準絶滅危惧 | Proconura yamamotoi ヤマモトアシブトコバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/6 (0.0%) | 2/541 (0.4%) | — |
| NT 準絶滅危惧 | Elampus musashinus ムサシトゲセイボウ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/9 (0.0%) | 1/489 (0.2%) | — |
| NT 準絶滅危惧 | Omalus grandis オオツヤセイボウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/16 (0.0%) | 1/489 (0.2%) | — |
| NT 準絶滅危惧 | Liacos melanogaster ナガセクロツチバチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/108 (0.0%) | — |
| NT 準絶滅危惧 | Amblyopone fulvida ケシノコギリハリアリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 131 | 0/13 (0.0%) | 99/17141 (0.6%) | — |
| NT 準絶滅危惧 | Anochetus shohki ヒメアギトアリ | — | — | ✓ | — | ✓ | No | — | — | — | 0 | 0 | 131 | 0/97 (0.0%) | 99/17141 (0.6%) | — |
| NT 準絶滅危惧 | Aphaenogaster edentula トゲナシアシナガアリ | — | — | — | — | ✓ | No | — | — | — | 0 | 8 | 131 | 7/280 (2.5%) | 99/17141 (0.6%) | — |
| NT 準絶滅危惧 | Lasius orientalis テラニシケアリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 131 | 5/528 (0.9%) | 99/17141 (0.6%) | — |
| NT 準絶滅危惧 | Leptanilla tanakai ヤクシマムカシアリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 131 | 0/45 (0.0%) | 99/17141 (0.6%) | — |
| NT 準絶滅危惧 | Probolomyrmex longinodus ホソハナナガアリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 131 | 0/12 (0.0%) | 99/17141 (0.6%) | — |
| NT 準絶滅危惧 | Anoplius viaticus ムツボシベッコウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 1/29 (3.4%) | 3/999 (0.3%) | — |
| NT 準絶滅危惧 | Machaerothrix tsushimensis キマダラズアカベッコウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/2 (0.0%) | 3/999 (0.3%) | — |
| NT 準絶滅危惧 | Parabatozonus hakodadi フタモンベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Euodynerus convergens チチジマドロバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 31 | 0/43 (0.0%) | 21/1092 (1.9%) | — |
| NT 準絶滅危惧 | Pararrhynchium tsunekii アマミカバフドロバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 31 | 0/6 (0.0%) | 21/1092 (1.9%) | — |
| NT 準絶滅危惧 | Stenodynerus ogasawaraensis オガサワラチビドロバチ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 31 | 0/20 (0.0%) | 21/1092 (1.9%) | — |
| NT 準絶滅危惧 | Ammophila atripes japonica フジジガバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/65 (0.0%) | 0/237 (0.0%) | — |
| NT 準絶滅危惧 | Bembecinus anthracinus ogasawaraensis オガサワラスナハキバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/23 (0.0%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Bembix formosana タイワンハナダカバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/40 (0.0%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Ceratocrabro shimoyamai シモヤマギングチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Cerceris amamiensis tokunosimana トクノシマツチスガリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 19 | 2/58 (3.4%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Cerceris pedetes マエダテツチスガリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 19 | 2/58 (3.4%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Cerceris tomiyamai エラブツチスガリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 19 | 2/58 (3.4%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Ectemnius furuichii ササキリギングチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 19 | 3/32 (9.4%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Gorytes ishigakiensis ババアワフキバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/14 (0.0%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Harpactus tumidus japonensis カワラアワフキバチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 19 | 0/22 (0.0%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Larra amplipennis アカオビケラトリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/6 (0.0%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Liris subtessellatus ogasawarae オガサワラコオロギバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/34 (0.0%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Psen boninensis オガサワラヨコバイバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/3 (0.0%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Psenulus ogasawaranus オガサワラマエダテバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/29 (0.0%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Sphex inusitatus fukuianus フクイアナバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/39 (0.0%) | 0/237 (0.0%) | — |
| NT 準絶滅危惧 | Trypoxylon chichidzimaense チチジマジガバチモドキ | — | — | — | ✓ | — | No | — | — | — | 0 | 2 | 19 | 1/71 (1.4%) | 11/1455 (0.8%) | — |
| NT 準絶滅危惧 | Heriades fulvohispida オガサワラコハキリバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/14 (0.0%) | 12/1122 (1.1%) | — |
| NT 準絶滅危惧 | Megachile xanthothrix キバラハキリバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 20 | 6/298 (2.0%) | 12/1122 (1.1%) | — |
| NT 準絶滅危惧 | Bombus florilegus ノサップマルハナバチ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 56 | 125 | 41/442 (9.3%) | 84/3777 (2.2%) | — |
| NT 準絶滅危惧 | Bombus ignitus クロマルハナバチ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 243 Mbp 100.0x | 4,026 714 kbp | 1 | 56 | 125 | 41/442 (9.3%) | 84/3777 (2.2%) | 2020-10-02 |
| NT 準絶滅危惧 | Xylocopa ogasawarensis オガサワラクマバチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 125 | 1/217 (0.5%) | 84/3777 (2.2%) | — |
| NT 準絶滅危惧 | Neohapalothrix manshukuensis シロウズギンモンアミカ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Anopheles saperoi オオハマハマダラカ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 105 | 150 | 42/1144 (3.7%) | 62/3754 (1.7%) | — |
| NT 準絶滅危惧 | Trichothaumalea japonica ケバネユスリカバエ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/80 (0.0%) | — |
| NT 準絶滅危惧 | Ragas circinata トビグチオドリバエ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/1 (0.0%) | 3/4149 (0.1%) | — |
| NT 準絶滅危惧 | Rhamphomyia mirabilis ハマナスクシオオドリバエ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 6 | 1/1577 (0.1%) | 3/4149 (0.1%) | — |
| NT 準絶滅危惧 | Symballophthalmus speciosus フタテンアシホソハシリバエ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/3 (0.0%) | 1/4092 (0.0%) | — |
| NT 準絶滅危惧 | Diostracus nakanishii タカネキアシナガレアシナガバエ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/9 (0.0%) | 9/9825 (0.1%) | — |
| NT 準絶滅危惧 | Thalassophorus spinipennis トゲバネイソネジレオバエ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Himalopsyche japonica オオナガレトビケラ | — | ✓ | — | ✓ | ✓ | Yes (1) | Scaffold, Reference | 547 Mbp 250.0x | 850 2.15 Mbp | 1 | 6 | 11 | 5/21 (23.8%) | 9/372 (2.4%) | 2023-02-08 |
| NT 準絶滅危惧 | Macrostemum okinawanum オキナワホシシマトビケラ （オキナワオオシマトビケラ） | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/36 (0.0%) | 6/1943 (0.3%) | — |
| NT 準絶滅危惧 | Ganonema inouei クチキトビケラ（クロアシエダトビケラ） | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/146 (0.0%) | — |
| NT 準絶滅危惧 | Georgium japonicum ビワアシエダトビケラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Setodes turbatus ギンボシツツトビケラ | — | — | — | — | — | No | — | — | — | 0 | 0 | 9 | 0/42 (0.0%) | 5/950 (0.5%) | — |
| NT 準絶滅危惧 | Setodes ujiensis ウジヒメセトトビケラ（ウジセトトビケラ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/42 (0.0%) | 5/950 (0.5%) | — |
| NT 準絶滅危惧 | Goera ogasawaraensis オガサワラニンギョウトビケラ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/39 (0.0%) | 0/61 (0.0%) | — |
| NT 準絶滅危惧 | Phragmataecia castaneae ハイイロボクトウ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 591 Mbp 53.0x | 217 6.05 Mbp | 2 | 2 | 6 | 1/1 (100.0%) | 3/334 (0.9%) | 2024-10-25 |
| NT 準絶滅危惧 | Balataea octomaculata ヤホシホソマダラ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Eterusia watanabei ツシマキモンチラシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 22 | 0/6 (0.0%) | 12/421 (2.9%) | — |
| NT 準絶滅危惧 | Rhagades pruni ルリハダホソクロバ | — | ✓ | ✓ | ✓ | — | Yes (2) | Chromosome, Reference | 1.08 Gbp 26.0x | 818 3.03 Mbp | 2 | 2 | 22 | 1/5 (20.0%) | 12/421 (2.9%) | 2024-09-29 |
| NT 準絶滅危惧 | Zygaena niphona niphona ベニモンマダラ本土亜種 | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 17 | 22 | 9/97 (9.3%) | 12/421 (2.9%) | — |
| NT 準絶滅危惧 | Chilo pulveratus ゴマフツトガ | — | — | — | — | — | No | — | — | — | 0 | 3 | 123 | 1/57 (1.8%) | 59/4263 (1.4%) | — |
| NT 準絶滅危惧 | Chrysoteuchia moriokensis モリオカツトガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 123 | 1/7 (14.3%) | 59/4263 (1.4%) | — |
| NT 準絶滅危惧 | Paracymoriza vagalis カワゴケミズメイガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 123 | 0/4 (0.0%) | 59/4263 (1.4%) | — |
| NT 準絶滅危惧 | Parapoynx ussuriensis ムナカタミズメイガ | — | — | ✓ | — | — | No | — | — | — | 0 | 2 | 123 | 1/25 (4.0%) | 59/4263 (1.4%) | — |
| NT 準絶滅危惧 | Carterocephalus palaemon satakei タカネキマダラセセリ飛騨山脈亜種 | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 5 | 474 | 3/15 (20.0%) | 406/3087 (13.2%) | — |
| NT 準絶滅危惧 | Leptalina unicolor ギンイチモンジセセリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 474 | 0/1 (0.0%) | 406/3087 (13.2%) | — |
| NT 準絶滅危惧 | Thymelicus leoninus hamadakohi スジグロチャバネセセリ愛媛亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 7 | 474 | 3/8 (37.5%) | 406/3087 (13.2%) | — |
| NT 準絶滅危惧 | Thymelicus leoninus leoninus スジグロチャバネセセリ名義タイプ亜種 | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 474 | 3/8 (37.5%) | 406/3087 (13.2%) | — |
| NT 準絶滅危惧 | Luehdorfia puziloi inexpecta ヒメギフチョウ本州亜種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 108 | 2/5 (40.0%) | 76/556 (13.7%) | — |
| NT 準絶滅危惧 | Luehdorfia puziloi yessoensis ヒメギフチョウ北海道亜種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 108 | 2/5 (40.0%) | 76/556 (13.7%) | — |
| NT 準絶滅危惧 | Parnassius eversmanni daisetsuzanus ウスバキチョウ | — | — | ✓ | — | — | No | — | — | — | 0 | 11 | 108 | 7/58 (12.1%) | 76/556 (13.7%) | — |
| NT 準絶滅危惧 | Anthocharis cardamines isshikii クモマツマキチョウ北アルプス・戸隠亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 2 | 4 | 79 | 2/17 (11.8%) | 37/910 (4.1%) | — |
| NT 準絶滅危惧 | Colias palaeno aias ミヤマモンキチョウ浅間連山亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 2 | 20 | 79 | 10/102 (9.8%) | 37/910 (4.1%) | — |
| NT 準絶滅危惧 | Colias palaeno sugitanii ミヤマモンキチョウ北アルプス亜種 | — | ✓ | — | — | — | No | — | — | — | 2 | 20 | 79 | 10/102 (9.8%) | 37/910 (4.1%) | — |
| NT 準絶滅危惧 | Artipe eryx okinawana イワカワシジミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 91 | 0/1 (0.0%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Fixsenia iyonis iyonis ベニモンカラスシジミ名義タイプ亜種, 四国亜種 | — | — | — | ✓ | — | No | — | — | — | 0 | 3 | 91 | 2/45 (4.4%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Fixsenia iyonis kibiensis ベニモンカラスシジミ中国地方亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 91 | 2/45 (4.4%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Fixsenia iyonis surugaensis ベニモンカラスシジミ中部地方亜種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 91 | 2/45 (4.4%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Glaucopsyche lycormas カバイロシジミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 91 | 1/10 (10.0%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Phengaris arionides takamukui オオゴマシジミ | — | — | — | — | — | No | — | — | — | 0 | 3 | 91 | 2/11 (18.2%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Phengaris teleius ogumae ゴマシジミ北海道・東北亜種 | — | — | — | — | — | No | — | — | — | 0 | 3 | 91 | 2/11 (18.2%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Pithecops corvus ryukyuensis リュウキュウウラボシシジミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 91 | 0/4 (0.0%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Plebejus argus micrargus ヒメシジミ本州・九州亜種 | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 6 | 91 | 4/65 (6.2%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Spindasis takanonis キマダラルリツバメ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 91 | 0/25 (0.0%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Tongeia fischeri caudalis クロツバメシジミ九州沿岸・朝鮮半島亜種 | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 91 | 0/7 (0.0%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Tongeia fischeri japonica クロツバメシジミ東日本亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 91 | 0/7 (0.0%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Tongeia fischeri shojii クロツバメシジミ中国地方・四国・九州内陸亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 91 | 0/7 (0.0%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Vacciniina optilete daisetsuzana カラフトルリシジミ | — | — | — | ✓ | ✓ | No | — | — | — | 2 | 4 | 91 | 2/10 (20.0%) | 47/2686 (1.7%) | — |
| NT 準絶滅危惧 | Brenthis daphne iwatensis ヒョウモンチョウ北海道・本州北部亜種 | — | — | ✓ | — | — | No | — | — | — | 1 | 3 | 766 | 3/4 (75.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Clossiana freija asahidakeana アサヒヒョウモン | — | ✓ | — | — | — | No | — | — | — | 2 | 20 | 766 | 10/50 (20.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Clossiana iphigenia カラフトヒョウモン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 20 | 766 | 10/50 (20.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Coenonympha hero neoperseis シロオビヒメヒカゲ北海道西部亜種 | — | — | ✓ | — | — | No | — | — | — | 0 | 11 | 766 | 6/36 (16.7%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Erebia ligea rishirizana クモマベニヒカゲ北海道亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 2 | 50 | 766 | 26/114 (22.8%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Erebia ligea takanonis クモマベニヒカゲ本州亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 2 | 50 | 766 | 26/114 (22.8%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Erebia neriene niphonica ベニヒカゲ本州亜種 | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 50 | 766 | 26/114 (22.8%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Hestina assimilis shirakii アカボシゴマダラ奄美亜種 | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 2 | 766 | 1/7 (14.3%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Kallima inachus eucerca コノハチョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 766 | 0/5 (0.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Kirinia fentoni キマダラモドキ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 766 | 0/2 (0.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Lethe europa pavida シロオビヒカゲ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 766 | 0/41 (0.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Oeneis melissa daisetsuzana ダイセツタカネヒカゲ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 4 | 766 | 2/32 (6.2%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Oeneis norna asamana タカネヒカゲ飛騨山脈亜種 | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 4 | 766 | 2/32 (6.2%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Polyura eudamippus weismanni フタオチョウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 766 | 0/132 (0.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Sasakia charonda charonda オオムラサキ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 766 | 0/2 (0.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Ypthima masakii マサキウラナミジャノメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 766 | 0/49 (0.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Ypthima riukiuana リュウキュウウラナミジャノメ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 766 | 0/49 (0.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Ypthima yayeyamana ヤエヤマウラナミジャノメ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 766 | 0/49 (0.0%) | 221/5384 (4.1%) | — |
| NT 準絶滅危惧 | Apochima excavata クワトゲエダシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 277 | 0/1 (0.0%) | 140/11801 (1.2%) | — |
| NT 準絶滅危惧 | Boninnadagara crinomorpha マルバエダシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Eupithecia extensaria シロマダラカバナミシャク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 30 | 277 | 15/556 (2.7%) | 140/11801 (1.2%) | — |
| NT 準絶滅危惧 | Gymnoscelis boninensis オガサワラチビナミシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 277 | 1/18 (5.6%) | 140/11801 (1.2%) | — |
| NT 準絶滅危惧 | Gymnoscelis melaninfra ウラグロチビナミシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 277 | 1/18 (5.6%) | 140/11801 (1.2%) | — |
| NT 準絶滅危惧 | Gymnoscelis montgomeryi ウラジロチビナミシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 277 | 1/18 (5.6%) | 140/11801 (1.2%) | — |
| NT 準絶滅危惧 | Pelagodes ogasawarensis チビサザナミシロアオシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 277 | 0/6 (0.0%) | 140/11801 (1.2%) | — |
| NT 準絶滅危惧 | Pseudonadagara hepatica カギバエダシャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Warreniplema fumicosta islandica アトキフタオ小笠原亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/133 (0.0%) | — |
| NT 準絶滅危惧 | Actias gnoma オナガミズアオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 1/31 (3.2%) | 11/1940 (0.6%) | — |
| NT 準絶滅危惧 | Attacus atlas ヨナグニサン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/15 (0.0%) | 11/1940 (0.6%) | — |
| NT 準絶滅危惧 | Loepa sakaei ハグルマヤママユ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/41 (0.0%) | 11/1940 (0.6%) | — |
| NT 準絶滅危惧 | Deilephila askoldensis ヒメスズメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 27 | 2/4 (50.0%) | 16/1402 (1.1%) | — |
| NT 準絶滅危惧 | Polyptychus chinensis ハガタスズメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 27 | 0/32 (0.0%) | 16/1402 (1.1%) | — |
| NT 準絶滅危惧 | Ptilodon kuwayamae クワヤマエグリシャチホコ | — | ✓ | — | — | — | No | — | — | — | 0 | 4 | 25 | 2/9 (22.2%) | 13/1837 (0.7%) | — |
| NT 準絶滅危惧 | Ramesa tosta カバイロシャチホコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 25 | 0/3 (0.0%) | 13/1837 (0.7%) | — |
| NT 準絶滅危惧 | Calliteara virginea ウスジロドクガ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 94 | 0/23 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Kidokuga torasan トラサンドクガ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 94 | 0/2 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Laelia coenosa スゲドクガ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 94 | 0/13 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Laelia kunigamiensis クニガミスゲドクガ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 94 | 0/13 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Aloa lactinea マエアカヒトリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 94 | 0/5 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Amata flava aritai ツマキカノコ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 94 | 0/66 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Eilema degenerella シロホソバ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 94 | 4/31 (12.9%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Eilema fuscodorsalis ヤネホソバ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 94 | 4/31 (12.9%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Grammia quenseli daisetsuzana ダイセツヒトリ | — | — | — | — | — | No | — | — | — | 0 | 1 | 94 | 1/52 (1.9%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Nikaea matsumurai トラガモドキ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Rhyparia purpurata ゴマベニシタヒトリ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 94 | 0/6 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Meganola mikabo ミカボコブガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 10 | 1/150 (0.7%) | 5/676 (0.7%) | — |
| NT 準絶滅危惧 | Nola umetsui チョウカイシロコブガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 10 | 1/141 (0.7%) | 5/676 (0.7%) | — |
| NT 準絶滅危惧 | Acronicta carbonaria ウスズミケンモン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 377 | 4/118 (3.4%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Acronicta digna クビグロケンモン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 377 | 4/118 (3.4%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Acronicta lutea ウスジロケンモン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 377 | 4/118 (3.4%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Adisura atkinsoni アカヘリヤガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/43 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Agrotis desertorum ハマヤガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 377 | 5/132 (3.8%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Amphipyra okinawensis クロシマカラスヨトウ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 4 | 377 | 2/16 (12.5%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Anarta melanopa コイズミヨトウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/23 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Callopistria ogasawaraensis ムニンツマキリヨトウ | — | — | ✓ | — | — | No | — | — | — | 0 | 2 | 377 | 1/24 (4.2%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Catocala actaea コシロシタバ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 94 | 3/268 (1.1%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Catocala ella ミヤマキシタバ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 94 | 3/268 (1.1%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Catocala koreana アズミキシタバ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 94 | 3/268 (1.1%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Catocala nagioides ヒメシロシタバ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 94 | 3/268 (1.1%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Cidariplura signata カギモンハナオイアツバ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Coranarta carbonaria ダイセツキシタヨトウ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 377 | 0/3 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Cucullia argentea アオモンギンセダカモクメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/58 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Cucullia fraudatrix ホシヒメセダカモクメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/58 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Cucullia jankowskii ギンモンセダカモクメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/58 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Cucullia mandschuriae ダイセンセダカモクメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/58 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Eupsilia contracta ウスミミモンキリガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 377 | 1/14 (7.1%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Eupsilia hidakaensis ヒダカミツボシキリガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 377 | 1/14 (7.1%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Hadena compta シロオビヨトウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 377 | 0/29 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Helicoverpa sugii クロタバコガ | — | — | ✓ | — | — | No | — | — | — | 0 | 16 | 377 | 4/81 (4.9%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Heliothis bivittata ギンスジアカヤガ | — | — | ✓ | — | — | No | — | — | — | 0 | 4 | 377 | 3/19 (15.8%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Hypena claripennis キシタアツバ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 94 | 0/6 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Jodia sericea ミスジキリガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/1 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Sarbanissa yunnana ツリフネソウトラガ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 377 | 0/4 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Sideridis kitti フジシロミャクヨトウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 377 | 0/19 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Speiredonia inocellata ホラズミクチバ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 94 | 0/3 (0.0%) | 46/8395 (0.5%) | — |
| NT 準絶滅危惧 | Sympistis funebris kurodakeana クロダケタカネヨトウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 377 | 0/74 (0.0%) | 183/7138 (2.6%) | — |
| NT 準絶滅危惧 | Virgo confusa ニセトガリヨトウ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Xestia descripta アサマウスモンヤガ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 14 | 377 | 7/103 (6.8%) | 183/7138 (2.6%) | — |
| DD 情報不足 | Amphinemura kawaii カワイオナシカワゲラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/54 (1.9%) | 5/342 (1.5%) | — |
| DD 情報不足 | Nocticola uenoi kikaiensis キカイホラアナゴキブリ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/42 (0.0%) | 0/74 (0.0%) | — |
| DD 情報不足 | Symploce miyakoensis ミヤコモリゴキブリ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 5 | 0/36 (0.0%) | 4/236 (1.7%) | — |
| DD 情報不足 | Symploce okinoerabuensis エラブモリゴキブリ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 5 | 0/36 (0.0%) | 4/236 (1.7%) | — |
| DD 情報不足 | Mantis religiosa ウスバカマキリ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 3.68 Gbp 48.0x | 5,789 1.41 Mbp | 1 | 1 | 6 | 1/4 (25.0%) | 3/320 (0.9%) | 2023-08-17 |
| DD 情報不足 | Parasongella japonica オチバコオロギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Taiwanemobius ryukyuensis リュウキュウハマコオロギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Conocephalus halophilus イズササキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/39 (0.0%) | 2/1398 (0.1%) | — |
| DD 情報不足 | Boninoxya anijimensis アニジマイナゴ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Austrohancockia amamiensis アマミヒラタヒシバッタ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 3 | 0/4 (0.0%) | 3/166 (1.8%) | — |
| DD 情報不足 | Megacrania tsudai adan ヤエヤマツダナナフシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 5 | 0/4 (0.0%) | 3/278 (1.1%) | — |
| DD 情報不足 | Galloisiana chujoi チュウジョウムシ（メギシマガロアムシ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/27 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Tinocallis insularis ムクロジヒゲマダラアブラムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 76 | 0/12 (0.0%) | 40/5096 (0.8%) | — |
| DD 情報不足 | Hypselosoma hirashimai アマミオオメノミカメムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/367 (0.0%) | — |
| DD 情報不足 | Hypselosoma matsumurae オオメノミカメムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/367 (0.0%) | — |
| DD 情報不足 | Arctocorisa kurilensis チシマミズムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/233 (0.4%) | — |
| DD 情報不足 | Glaenocorisa cavifrons オオメミズムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/233 (0.4%) | — |
| DD 情報不足 | Physatocheila distinguenda コリヤナギグンバイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/366 (0.3%) | — |
| DD 情報不足 | Ectomocoris elegans ヤエヤマサシガメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/20 (0.0%) | 6/1683 (0.4%) | — |
| DD 情報不足 | Empicoris brachystigma フタオビマダラカモドキサシガメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/14 (0.0%) | 6/1683 (0.4%) | — |
| DD 情報不足 | Haematoloecha rufithorax ツシマアカサシガメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/4 (0.0%) | 6/1683 (0.4%) | — |
| DD 情報不足 | Aradus betulae カバヒラタカメムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 2 | 1/33 (3.0%) | 1/344 (0.3%) | — |
| DD 情報不足 | Sialis yamatoensis ヤマトセンブリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 4 | 2/41 (4.9%) | 2/56 (3.6%) | — |
| DD 情報不足 | Orientispa shirozui ツシマカマキリモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/81 (0.0%) | — |
| DD 情報不足 | Chlaenius pericallus オオサカアオゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/50 (0.0%) | 23/6449 (0.4%) | — |
| DD 情報不足 | Chlaenius prostenus クビナガキベリアオゴミムシ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/50 (0.0%) | 23/6449 (0.4%) | — |
| DD 情報不足 | Harpalomimetes orbicollis タナカツヤハネゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Lachnoderma asperum アリスアトキリゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 38 | 0/1 (0.0%) | 23/6449 (0.4%) | — |
| DD 情報不足 | Odacantha hagai ハガクビナガゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 38 | 0/1 (0.0%) | 23/6449 (0.4%) | — |
| DD 情報不足 | Tinoderus singularis クビナガヨツボシゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Haliplus japonicus クビボソコガシラミズムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/56 (0.0%) | 0/81 (0.0%) | — |
| DD 情報不足 | Notomicrus tenellus ホソコツブゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/39 (0.0%) | 0/123 (0.0%) | — |
| DD 情報不足 | Phreatodytes haibaraensis ハイバラムカシゲンゴロウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| DD 情報不足 | Phreatodytes relictus ムカシゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| DD 情報不足 | Allopachria flavomaculata キボシケシゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/2 (0.0%) | 1/2967 (0.0%) | — |
| DD 情報不足 | Copelatus minutissimus チビセスジゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/468 (0.0%) | 1/2967 (0.0%) | — |
| DD 情報不足 | Dimitshydrus typhlops メクラケシゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Hydroglyphus flammulatus アンピンチビゲンゴロウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/22 (0.0%) | 1/2967 (0.0%) | — |
| DD 情報不足 | Hydroglyphus kifunei キオビチビゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/22 (0.0%) | 1/2967 (0.0%) | — |
| DD 情報不足 | Leiodytes miyamotoi ホソマルチビゲンゴロウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/17 (0.0%) | 1/2967 (0.0%) | — |
| DD 情報不足 | Morimotoa phreatica phreatica メクラゲンゴロウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Gyrinus niponicus ニッポンミズスマシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/284 (0.0%) | — |
| DD 情報不足 | Orectochilus teranishii テラニシオナガミズスマシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/15 (0.0%) | 0/284 (0.0%) | — |
| DD 情報不足 | Ochthebius danjo シオダマリセスジダルマガムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/278 (0.0%) | 0/817 (0.0%) | — |
| DD 情報不足 | Ochthebius nipponicus ニッポンセスジダルマガムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/278 (0.0%) | 0/817 (0.0%) | — |
| DD 情報不足 | Hydrochus laferi キタホソガムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/36 (2.8%) | 1/36 (2.8%) | — |
| DD 情報不足 | Hydrochara affinis コガムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/17 (0.0%) | 6/1284 (0.5%) | — |
| DD 情報不足 | Pelthydrus okinawanus オキナワマルチビガムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/7 (0.0%) | 6/1284 (0.5%) | — |
| DD 情報不足 | Adinopsis nippon ヤチハネカクシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/4 (25.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Apharinodes papageno オオウロコアリヅカムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/1 (0.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Bledius salsus オオツノハネカクシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 62 | 0/56 (0.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Deinopsis minor ヒメヌレチハネカクシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/4 (25.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Deinopsis modesta ヌレチハネカクシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/4 (25.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Gymnusa miyashitai トマムハネカクシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/6 (16.7%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Halorhadinus aequalis クロイソハネカクシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/2 (0.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Halorhadinus inaequalis ワカサイソハネカクシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/2 (0.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Halorhadinus sawadai ウマヅライソハネカクシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/2 (0.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Liparocephalus litoralis ホテイウミハネカクシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/3 (0.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Pselaphus lewisi ルイスアリヅカムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 62 | 0/2 (0.0%) | 50/6959 (0.7%) | — |
| DD 情報不足 | Trox kyotensis キョウトチビコブスジコガネ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/33 (0.0%) | 0/96 (0.0%) | — |
| DD 情報不足 | Aphodius brachysomus セマルオオマグソコガネ | — | — | — | ✓ | — | No | — | — | — | 0 | 7 | 62 | 4/218 (1.8%) | 41/4854 (0.8%) | — |
| DD 情報不足 | Copris tripartitus ヒメダイコクコガネ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 62 | 1/40 (2.5%) | 41/4854 (0.8%) | — |
| DD 情報不足 | Mimela sakishimana サキシマチビコガネ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/9 (0.0%) | 41/4854 (0.8%) | — |
| DD 情報不足 | Mozartius testaceus ダルママグソコガネ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Poecilophilides rusticola アカマダラハナムグリ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Trypoxyius dichotomus takarai オキナワカブトムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Dryopomorphus amami アマミハバビロドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/8 (0.0%) | 1/528 (0.2%) | — |
| DD 情報不足 | Urumaelmis uenoi tokarana トカラツヤドロムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/2 (0.0%) | 1/528 (0.2%) | — |
| DD 情報不足 | Agrilus boninensis オガサワラナガタマムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 7 | 4/237 (1.7%) | 5/721 (0.7%) | — |
| DD 情報不足 | Agrilus suzukii シラフオガサワラナガタマムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 7 | 4/237 (1.7%) | 5/721 (0.7%) | — |
| DD 情報不足 | Laius asahinai イソジョウカイモドキ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 2/442 (0.5%) | — |
| DD 情報不足 | Ermischiella hahajimana ハハジマヒメハナノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Derosphaerus foveolatus アラメゴミムシダマシ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 42 | 0/3 (0.0%) | 18/2316 (0.8%) | — |
| DD 情報不足 | Amamiclytus nobuoi ケズネチビトラカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| DD 情報不足 | Boninoleiops kitajimai キタジマモモブトカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Obrium cantharinum shimomurai アカオニアメイロカミキリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/8 (0.0%) | 20/3106 (0.6%) | — |
| DD 情報不足 | Olenecamptus fukutomii オガサワラオオシロカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/7 (0.0%) | 20/3106 (0.6%) | — |
| DD 情報不足 | Ostedes inermis densepunctata アマミハリムネモモブトカミキリ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 33 | 0/1 (0.0%) | 20/3106 (0.6%) | — |
| DD 情報不足 | Parastrangalis ishigakiensis ヤエヤマクロスジホソハナカミキリ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/3 (0.0%) | 20/3106 (0.6%) | — |
| DD 情報不足 | Rondibilis femorata シロスジトゲバカミキリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 33 | 0/4 (0.0%) | 20/3106 (0.6%) | — |
| DD 情報不足 | Donacia akiyamai セラネクイハムシ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 104 | 0/62 (0.0%) | 57/6890 (0.8%) | — |
| DD 情報不足 | Baryrhynchus yaeyamensis ヤエヤマミツギリゾウムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/2 (0.0%) | 1/150 (0.7%) | — |
| DD 情報不足 | Cyphagogus iwatensis チャバネホソミツギリゾウムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Xyelecia japonica チャイロナギナタハバチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Chrysolyda leucocephala シロズヒラタハバチ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/180 (0.6%) | — |
| DD 情報不足 | Agenocimbex jucunda ホシアシブトハバチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/184 (0.5%) | — |
| DD 情報不足 | Nipponorhynchus bimaculatus ヒダクチナガハバチ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 22 | 0/2 (0.0%) | 14/4348 (0.3%) | — |
| DD 情報不足 | Nipponorhynchus mirabilis クチナガハバチ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 22 | 0/2 (0.0%) | 14/4348 (0.3%) | — |
| DD 情報不足 | Siobla metallica ルリコシアカハバチ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 22 | 0/54 (0.0%) | 14/4348 (0.3%) | — |
| DD 情報不足 | Stiricorsia tosensis トサヤドリキバチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Agriotypus gracilis ミズバチ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 95 | 0/6 (0.0%) | 67/24785 (0.3%) | — |
| DD 情報不足 | Philoctetes monticola ミヤマツヤセイボウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/13 (0.0%) | 1/489 (0.2%) | — |
| DD 情報不足 | Stilbum cyanurum pacificum オオセイボウ本土亜種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/3 (0.0%) | 1/489 (0.2%) | — |
| DD 情報不足 | Trichrysis sudai スダセイボウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/6 (0.0%) | 1/489 (0.2%) | — |
| DD 情報不足 | Caenosclerogibba japonica シロアリモドキヤドリバチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/35 (0.0%) | — |
| DD 情報不足 | Camponotus amamianus ツヤミカドオオアリ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 131 | 5/1041 (0.5%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Camponotus nipponensis ケブカツヤオオアリ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 131 | 5/1041 (0.5%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Formica fukaii ツノアカヤマアリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 131 | 5/3058 (0.2%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Lasius hikosanus ミヤマアメイロケアリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 10 | 131 | 5/528 (0.9%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Leptanilla oceanica オガサワラムカシアリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 131 | 0/45 (0.0%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Ponera swezeyi オガサワラハリアリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 131 | 0/95 (0.0%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Probolomyrmex okinawensis ハナナガアリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 131 | 0/12 (0.0%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Temnothorax haira オガサワラムネボソアリ | — | — | — | — | ✓ | No | — | — | — | 0 | 8 | 131 | 7/244 (2.9%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Temnothorax santra シワムネボソアリ | — | — | — | — | ✓ | No | — | — | — | 0 | 8 | 131 | 7/244 (2.9%) | 99/17141 (0.6%) | — |
| DD 情報不足 | Anoplius eous アケボノベッコウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 1/29 (3.4%) | 3/999 (0.3%) | — |
| DD 情報不足 | Cryptocheilus sugiharai スギハラベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 5 | 1/28 (3.6%) | 3/999 (0.3%) | — |
| DD 情報不足 | Dipogon ogasawarensis オガサワラヒゲベッコウ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 5 | 0/23 (0.0%) | 3/999 (0.3%) | — |
| DD 情報不足 | Paracyphononyx alienus アオスジベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/3 (0.0%) | 3/999 (0.3%) | — |
| DD 情報不足 | Dolichovespula adulterina montivaga ヤドリホオナガスズメバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 31 | 3/33 (9.1%) | 21/1092 (1.9%) | — |
| DD 情報不足 | Dolichovespula media sugare キオビホオナガスズメバチ本州亜種 | — | — | — | — | — | No | — | — | — | 2 | 4 | 31 | 3/33 (9.1%) | 21/1092 (1.9%) | — |
| DD 情報不足 | Dolichovespula saxonica nipponica ニッポンホオナガスズメバチ | — | — | — | — | — | No | — | — | — | 1 | 4 | 31 | 3/33 (9.1%) | 21/1092 (1.9%) | — |
| DD 情報不足 | Polistes japonicus japonicus ヤマトアシナガバチ | — | — | — | ✓ | — | No | — | — | — | 0 | 6 | 31 | 6/154 (3.9%) | 21/1092 (1.9%) | — |
| DD 情報不足 | Symmorphus captivus オオハムシドロバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 31 | 0/17 (0.0%) | 21/1092 (1.9%) | — |
| DD 情報不足 | Vespa crabro flavofasciata モンスズメバチ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 3 | 7 | 31 | 3/29 (10.3%) | 21/1092 (1.9%) | — |
| DD 情報不足 | Argogorytes nipponis ニッポンアワフキバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/3 (0.0%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Bembecinus hungaricus japonicus ヤマトスナハキバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/23 (0.0%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Crossocerus heydeni nipponis ガロアギングチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 19 | 1/73 (1.4%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Crossocerus pusillus タイセツギングチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 19 | 1/73 (1.4%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Ectemnius martjanowii アギトギングチ | — | — | — | — | — | No | — | — | — | 0 | 5 | 19 | 3/32 (9.4%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Passaloecus koreanus カラトイスカバチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/78 (0.0%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Pison argentatum hanedai ハネダピソン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/20 (0.0%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Pison koreense コウライピソン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/20 (0.0%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Pison oakleyi boninense オガサワラピソン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/20 (0.0%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Spadicocrabro nitobei ニトベギングチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Towada flavitarsus キユビギングチ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Trypoxylon ambiguum フクイジガバチモドキ | — | — | — | ✓ | — | No | — | — | — | 0 | 2 | 19 | 1/71 (1.4%) | 11/1455 (0.8%) | — |
| DD 情報不足 | Andrena yasumatsui ヤスマツヒメハナバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 30 | 34 | 15/726 (2.1%) | 18/1023 (1.8%) | — |
| DD 情報不足 | Megachile lagopoda furukawai フルカワフトハキリバチ | — | — | — | ✓ | ✓ | No | — | — | — | 1 | 10 | 20 | 6/298 (2.0%) | 12/1122 (1.1%) | — |
| DD 情報不足 | Megachile pseudomonticola クズハキリバチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 20 | 6/298 (2.0%) | 12/1122 (1.1%) | — |
| DD 情報不足 | Osmia orientalis マイマイツツハナバチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 20 | 3/201 (1.5%) | 12/1122 (1.1%) | — |
| DD 情報不足 | Bombus consobrinus wittenburgi ナガマルハナバチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 56 | 125 | 41/442 (9.3%) | 84/3777 (2.2%) | — |
| DD 情報不足 | Bombus ussurensis ウスリーマルハナバチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 56 | 125 | 41/442 (9.3%) | 84/3777 (2.2%) | — |
| DD 情報不足 | Thyreus decorus ルリモンハナバチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 125 | 0/29 (0.0%) | 84/3777 (2.2%) | — |
| DD 情報不足 | Neopanorpa subreticulata イシガキシリアゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/84 (0.0%) | 2/245 (0.8%) | — |
| DD 情報不足 | Panorpa amamiensis アマミシリアゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/89 (2.2%) | 2/245 (0.8%) | — |
| DD 情報不足 | Panorpa globulifera シコクミスジシリアゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/89 (2.2%) | 2/245 (0.8%) | — |
| DD 情報不足 | Panorpa hiurai ヒウラシリアゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/89 (2.2%) | 2/245 (0.8%) | — |
| DD 情報不足 | Bittacus sinensis ホシガガンボモドキ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/19 (0.0%) | 0/27 (0.0%) | — |
| DD 情報不足 | Nymphomyia alba カスミハネカ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/7 (0.0%) | — |
| DD 情報不足 | Nymphomyia rohdendorfi キョクトウハネカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/7 (0.0%) | — |
| DD 情報不足 | Protoplasa alexanderi アルプスニセヒメガガンボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/7 (0.0%) | — |
| DD 情報不足 | Protoplasa esakii エサキニセヒメガガンボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/7 (0.0%) | — |
| DD 情報不足 | Pachyneura fasciata モイワエゾカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/2 (0.0%) | — |
| DD 情報不足 | Axymyia japonica ヤマトクチキカ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/3 (0.0%) | — |
| DD 情報不足 | Haruka elegans ハマダラハルカ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Coenomyia basalis ネグロクサアブ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/1 (0.0%) | 1/70 (1.4%) | — |
| DD 情報不足 | Odontosabula decora キンシマクサアブ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Odontosabula fulvipilosa ヒメシマクサアブ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Odontosabula gloriosa シマクサアブ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Glutops itoi イトウタマユラアブ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/14 (0.0%) | — |
| DD 情報不足 | Lucilia chini カエルキンバエ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 26 | 2/216 (0.9%) | 12/723 (1.7%) | — |
| DD 情報不足 | Neopithecops zalmora zalmora ヒメウラボシシジミ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 91 | 0/1 (0.0%) | 47/2686 (1.7%) | — |
| DD 情報不足 | Catocala naganoi mahoroba マホロバキシタバ | — | — | — | — | — | No | — | — | — | 0 | 6 | 94 | 3/268 (1.1%) | 46/8395 (0.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Mnais pruinosa 房総半島のシロバネカワトンボ（f. edai）を含むアサヒナカワトンボ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/13 (0.0%) | 4/180 (2.2%) | — |
| LP 絶滅のおそれの ある地域個体群 | Nipponosemia terminalis 宮古島のツマグロゼミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/1219 (0.2%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Ogasawarana chichijimana チチジマヤマキサゴ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Ogasawarana habei ソロバンダマヤマキサゴ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Ogasawarana rex アカビシヤマキサゴ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Assiminea sp. D リュウキュウカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| EX 絶滅 | Hirasea diplomphalus latispira ヒラクボエンザガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea eutheca コシタカエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea goniobasis ソコカドエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea hypolia ツヤエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea major オオエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea nesiotica liobasis ハタイエンザガイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea planulata biconcava ナカクボエンザガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea planulata planulata ヒラマキエンザガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea profundispira コダマエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasea sinuosa エンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| EX 絶滅 | Hirasiella clara エンザガイモドキ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Lamprocystis hahajimana pachychilus アツクチハハジマヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/13 (0.0%) | — |
| EX 絶滅 | Trochochlamys ogasawarana オガサワラキビ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| EX 絶滅 | Vitrinula chichijimana チチジマレンズガイ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Vitrinula hahajimana ハハジマレンズガイ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Ogasawarana obtusa ミガキヤマキサゴ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Chamalycaeus okinawaensis オキナワムシオイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/16 (0.0%) | — |
| CR 絶滅危惧IA類 | Chamalycaeus sp. イリオモテムシオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR 絶滅危惧IA類 | Nobuea sp. ゴトウノブエガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Pirenella cancellata ヌノメヘナタリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/10 (0.0%) | 0/48 (0.0%) | — |
| CR 絶滅危惧IA類 | Angustassiminea sp. A ヘドクリイロカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/64 (0.0%) | — |
| CR 絶滅危惧IA類 | Angustassiminea sp. B ティンダハナタクリイロカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/64 (0.0%) | — |
| CR 絶滅危惧IA類 | Angustassiminea sp. C ウフアガリクリイロカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/64 (0.0%) | — |
| CR 絶滅危惧IA類 | Cavernacmella sp. A ナラオゴマオカチグサ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Cavernacmella sp. B コシキゴマオカチグサ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Cavernacmella sp. C ウフアガリゴマオカチグサ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Paludinellassiminea daitoensis ダイトウオカチグサ (ダイトウヘソカド) | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/64 (0.0%) | — |
| CR 絶滅危惧IA類 | Paludinellassiminea miyakoinsularis ミヤコオカチグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/64 (0.0%) | — |
| CR 絶滅危惧IA類 | Paludinellassiminea sp. A タマグスクオカチグサ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/64 (0.0%) | — |
| CR 絶滅危惧IA類 | Paludinellassiminea sp. B ドナンオカチグサ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/64 (0.0%) | — |
| CR 絶滅危惧IA類 | Parafossarulus manchouricus japonicus マメタニシ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/37 (0.0%) | — |
| CR 絶滅危惧IA類 | Gammatricula shini ヨナグニカタヤマガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/5 (0.0%) | 1/90 (1.1%) | — |
| CR 絶滅危惧IA類 | Truncatella oagariensis オカクビキレ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/15 (0.0%) | — |
| CR 絶滅危惧IA類 | Truncatella sp. B アソブイトクビキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/15 (0.0%) | — |
| CR 絶滅危惧IA類 | Truncatella sp. C カガヨイクビキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/15 (0.0%) | — |
| CR 絶滅危惧IA類 | Truncatella sp. D キザハシクビキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/15 (0.0%) | — |
| CR 絶滅危惧IA類 | Truncatella sp. E ロウタキクビキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/15 (0.0%) | — |
| CR 絶滅危惧IA類 | Marginellidae gen. &. sp. オカトリノコガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/44 (0.0%) | 0/44 (0.0%) | — |
| CR 絶滅危惧IA類 | Mathilda sinensis タクミニナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Camptoceras hirasei カワネジガイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/1 (0.0%) | 7/668 (1.0%) | — |
| CR 絶滅危惧IA類 | Ferrissia nipponica カワコザラ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/215 (0.0%) | — |
| CR 絶滅危惧IA類 | Succinea sp. ダイトウオカモノアラガイ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/88 (0.0%) | 0/180 (0.0%) | — |
| CR 絶滅危惧IA類 | Luchuena sp. クメジマキセルモドキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Megalophaedusa fukudainadai ナルトギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR 絶滅危惧IA類 | Stereophaedusa sp. (Sm) ナタマメギセル（小型） | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR 絶滅危惧IA類 | Stereophaedusa striatella ミヤコオキナワギセル | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR 絶滅危惧IA類 | Zaptyx daitojimana ダイトウノミギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| CR 絶滅危惧IA類 | Cipangocharax ananensis アナンムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Nesiohelix omphalina bipyramidalis オオアガリマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/7 (0.0%) | 4/1495 (0.3%) | — |
| CR 絶滅危惧IA類 | Nesiohelix omphalina omphalina ヘソアキアツマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/7 (0.0%) | 4/1495 (0.3%) | — |
| CR 絶滅危惧IA類 | Sinohyriopsis schlegelii イケチョウガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/4 (25.0%) | 8/869 (0.9%) | — |
| CR 絶滅危惧IA類 | Apolymetis meyeri チリメンジュロウジン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Cyclina sp. ダテオキシジミ | — | — | — | — | — | No | — | — | — | 0 | 1 | 16 | 1/1 (100.0%) | 11/280 (3.9%) | — |
| CR 絶滅危惧IA類 | Borniopsis sp． ヨコヅナケボリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/66 (0.0%) | — |
| EN 絶滅危惧IB類 | Awalycaeus yanoshokoae サルダアツブタムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Platyrhaphe hirasei hirasei ヒラセアツブタガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/261 (0.0%) | — |
| EN 絶滅危惧IB類 | Diplommatina nishii ハンミガキゴマガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| EN 絶滅危惧IB類 | Cantharus cecillei オガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/3 (0.0%) | 2/358 (0.6%) | — |
| EN 絶滅危惧IB類 | Gyrineum natator ウネボラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/8 (0.0%) | 1/54 (1.9%) | — |
| EN 絶滅危惧IB類 | Gyraulus sp. ヒメヒラマキミズマイマイ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 20 | 0/205 (0.0%) | 7/668 (1.0%) | — |
| EN 絶滅危惧IB類 | Luchuena luchuana リュウキュウキセルモドキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Luchuena reticulata キカイキセルモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/69 (0.0%) | — |
| EN 絶滅危惧IB類 | Stereophaedusa azumai アズマギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| EN 絶滅危惧IB類 | Stereophaedusa caudata トクネニヤダマシギセル | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| EN 絶滅危惧IB類 | Stereophaedusa sp. (NL) ナタマメギセル（北部大型） | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| EN 絶滅危惧IB類 | Stereophaedusa sp. (SL) ナタマメギセル（南部大型） | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| EN 絶滅危惧IB類 | Bekkochlamys sp. オキナワテラマチベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| EN 絶滅危惧IB類 | Euconulidae gen. & sp. ヨナグニシロベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/43 (0.0%) | 0/43 (0.0%) | — |
| EN 絶滅危惧IB類 | Meghimatium sp. ダンジョナメクジ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/17 (5.9%) | 1/38 (2.6%) | — |
| EN 絶滅危惧IB類 | Chosenelix sp. ツシマウスカワマイマイモドキ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 4/1495 (0.3%) | — |
| EN 絶滅危惧IB類 | Moellendorffia tokunoensis トクノシマケハダシワクチマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/3 (0.0%) | 4/1495 (0.3%) | — |
| EN 絶滅危惧IB類 | Nipponochloritis obscura トクノシマビロウドマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| EN 絶滅危惧IB類 | Satsuma akiratadai アキラマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| EN 絶滅危惧IB類 | Satsuma caliginosa picta ヨナクニマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| EN 絶滅危惧IB類 | Satsuma largillierti シラユキヤマタカマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| EN 絶滅危惧IB類 | Satsuma sp. A サンエンマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| EN 絶滅危惧IB類 | Mesocibota bistrigata ヒメエガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Margaritifera laevis カワシンジュガイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/8 (12.5%) | 1/18 (5.6%) | — |
| EN 絶滅危惧IB類 | Margaritifera togakushiensis コガタカワシンジュガイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/8 (12.5%) | 1/18 (5.6%) | — |
| EN 絶滅危惧IB類 | Cristaria plicata カラスガイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/5 (0.0%) | 8/869 (0.9%) | — |
| EN 絶滅危惧IB類 | Lanceolaria kihirai キュウシュウササノハガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/9 (0.0%) | 8/869 (0.9%) | — |
| EN 絶滅危惧IB類 | Sinanodonta tumens オグラヌマガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/43 (2.3%) | 8/869 (0.9%) | — |
| CR+EN 絶滅危惧I類 | Lunella ogasawarana オガサワラスガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/23 (0.0%) | 1/153 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Ogasawarana arata マキスジヤマキサゴ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ogasawarana capsula ハハジマヤマキサゴ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ogasawarana comes ナカノシマヤマキサゴ | DD | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ogasawarana discrepans アニジマヤマキサゴ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ogasawarana hirasei ヒラセヤマキサゴ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ogasawarana metamorpha ハゲヨシワラヤマキサゴ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ogasawarana nitida スベスベヤマキサゴ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ogasawarana optima カドオガサワラヤマキサゴ | DD | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ogasawarana yoshiwarana ヨシワラヤマキサゴ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Awalycaeus akiratadai タダアツブタムシオイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus itonis itonis イトウムシオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/16 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus kurodatokubeii クロダアツクチムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus miyazakii ミヤザキムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus nakashimai ditacaeus ヒョットコイトウムシオイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus nakashimai nakashimai クビレイトウムシオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus nishii タカチホムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus purus ヒメムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus shiibaensis シイバムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus takahashii オナガラムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus tokunoshimanus principialis オオムシオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus tokunoshimanus tokunoshimanus トクノシマムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Chamalycaeus yanoshigehumii ヤノムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Cipangocharax biexcisus クチキレムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Cipangocharax placeonovitas クビナガムシオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Cyathopoma nishinoi イトマキミジンヤマタニシ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/261 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Nobuea kurodai ニッポンノブエガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Diplommatina pudica ベニゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Cerithium torresi ホソコオロギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/41 (0.0%) | 0/93 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Semisulcospira nakasekoae ナカセコカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| CR+EN 絶滅危惧I類 | Cerithidea tonkiniana シマヘナタリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/21 (0.0%) | 0/48 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Cerithideopsis largillierti クロヘナタリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/48 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Stenomelania boninensis オガサワラカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/19 (0.0%) | 1/119 (0.8%) | — |
| CR+EN 絶滅危惧I類 | Stenomelania costellaris アマミカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/19 (0.0%) | 1/119 (0.8%) | — |
| CR+EN 絶滅危惧I類 | Stenomelania sp. A ムチカワニナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/19 (0.0%) | 1/119 (0.8%) | — |
| CR+EN 絶滅危惧I類 | Stenomelania juncea ヨシカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/19 (0.0%) | 1/119 (0.8%) | — |
| CR+EN 絶滅危惧I類 | Stenomelania uniformis スグカワニナ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/19 (0.0%) | 1/119 (0.8%) | — |
| CR+EN 絶滅危惧I類 | Tarebia sp. カリントウカワニナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/119 (0.8%) | — |
| CR+EN 絶滅危惧I類 | Laguncula pulchella サキグロタマツメタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/1 (0.0%) | 3/74 (4.1%) | — |
| CR+EN 絶滅危惧I類 | Paratectonatica tigrina ゴマフダマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/1 (0.0%) | 3/74 (4.1%) | — |
| CR+EN 絶滅危惧I類 | Akiyoshia nanatsugamaensis ナナツガマミジンツボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Moria kubotai ナナツガマホラアナミジンニナ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/177 (0.6%) | — |
| CR+EN 絶滅危惧I類 | Allepithema nagayamai ナガヤマヤマツボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Assimineidae gen. B kyushuensis オオクリイロカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/64 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Cavernacmella kuzuuensis ホラアナゴマオカチグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/64 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Conacmella vagans キバオカチグサ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ditropisena sp. D ドームカドカド | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Coliracemata katurana カトゥラプシキシタダミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Ceratia nagashima ナガシマツボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/19 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Pseudonoba yendoi イリエツボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Fukuia integra ヤママメタニシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/90 (1.1%) | — |
| CR+EN 絶滅危惧I類 | Fukuia multistriata フクイシブキツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/90 (1.1%) | — |
| CR+EN 絶滅危惧I類 | Oncomelania nosophora ミヤイリガイ（カタヤマガイ） | VU | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/3 (33.3%) | 1/90 (1.1%) | — |
| CR+EN 絶滅危惧I類 | Stenothyra thermaecola オンセンゴマツボ（オンセンミズゴマツボ） | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/17 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Macromphalus tornatilis ハツカネズミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Mitrella martensi マルテンスマツムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/40 (0.0%) | 0/202 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Reticunassa hiradoensis ウネムシロ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/347 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Reticunassa sp. A アツミムシロ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/347 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Reticunassa sp. B シンサクムシロ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/347 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Nassarius variciferus ウネハナムシロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Nassarius succinctus ヒロオビヨフバイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Cincinna kizakikoensis キザキコミズシタダミ | CR | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Tomura himeshima ヒメシマイシン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Tomura yashima ヤシマイシン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Amathina tricarinata イソチドリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Leucotina dianae マキモノガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Pyramidellidae gen. A. & sp. B オキナワヌカルミクチキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/71 (0.0%) | 0/71 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Radix hamadai ハマダモノアラガイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/251 (0.4%) | 4/420 (1.0%) | — |
| CR+EN 絶滅危惧I類 | Culmenella prashadi ヒダリマキモノアラガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/2 (0.0%) | 7/668 (1.0%) | — |
| CR+EN 絶滅危惧I類 | Smeagolidae gen. & sp. A キタギシマゴクリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Smeagolidae gen. & sp. B ヒエンハマゴクリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Smeagolidae gen. & sp. C タナゴジマゴクリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Cassidula nigrobrunnea ヒメシイノミミミガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/9 (0.0%) | 1/149 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Cassidula plecotrematoides japonica シイノミミミガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/9 (0.0%) | 1/149 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Cassidula schmackeriana ヘゴノメミミガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/9 (0.0%) | 1/149 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Cylindrotis quadrasi ナズミガイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/149 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Ellobium pallidum コハクオカミミガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 1 | 1 | 1/8 (12.5%) | 1/149 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Laemodonta bella カドバリコミミガイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/149 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Melampus cristatus アツクチハマシイノミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/149 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Pythia cecillei オキヒラシイノミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/11 (0.0%) | 1/149 (0.7%) | — |
| CR+EN 絶滅危惧I類 | Platevindex sp. C ヤベガワモチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 6 | 0/19 (0.0%) | 5/133 (3.8%) | — |
| CR+EN 絶滅危惧I類 | Platevindex sp. A センベイアワモチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 6 | 0/19 (0.0%) | 5/133 (3.8%) | — |
| CR+EN 絶滅危惧I類 | Boninosuccinea ogasawarae オガサワラオカモノアラガイ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Boninosuccinea punctulispira テンスジオカモノアラガイ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Pupilla cryptodon サナギガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/21 (0.0%) | 0/54 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Gastrocopta chichijimana チチジマスナガイ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/54 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hypselostoma insularum ラッパガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/151 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Vertigo hachijoensis ハチジョウキバサナギガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/115 (0.0%) | 0/151 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Vertigo hirasei キバサナギガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/115 (0.0%) | 0/151 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Boninena callistoderma ハハジマキセルモドキ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Boninena hiraseana chichijimana チチジマキセルモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Boninena hiraseana hiraseana ヒラセキセルモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Boninena ogasawarae オガサワラキセルモドキ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Luchuena eucharistus ニシキキセルモドキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Luchuena hachijoensis ハチジョウキセルモドキ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Mirus gracilispira ヤセキセルモドキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/69 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa aenea シンチュウギセル（エイネギセル） | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa albela ケショウギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa aratorum タビトギセル（アラトラギセル） | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa ikenoi ホウライジギセル | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa ishikawai イシカワギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa masatokandai masatokandai オオイタシロギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa masatokandai shiroi ヒメシロギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa spelaeonis カザアナギセル | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Megalophaedusa toshiyukii ナンピギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia ashizuriensis トカラコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia echo コダマコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia elegans ニシキコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia euholostoma ハナコギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia holotrema マルクチコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia hungerfordiana カスガコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia masaoi アズママルクチコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia monelasmus エゾコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia nakadai ナカダコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Reinia variegata ヒロクチコギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa affinis シコクタケノコギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa costifera タイシャクギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa elongata タケノコギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa hemileuca hemileuca ハンジロギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa hemileuca takii タキギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa higomonticola ヒゴコンボウギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa hiraseana トクサギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa ijimae イイジマギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa inclyta リュウキュウギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Stereophaedusa neniopsis ネニヤダマシギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Tosaphaedusa akiratadai シロハダギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Zaptyx dolichoptyx カズマキノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Zaptyx hyperaptyx トクノシマツムガタノミギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Zaptyx inversiluna サカヅキノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Zaptyx longiplicata イトヒキツムガタノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Zaptyx purissima ゾウゲツヤノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| CR+EN 絶滅危惧I類 | Sinoennea yonakunijimana ヨナクニダワラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/5 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Plectopylis hirasei イトカケマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/4 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Zonitoides apertus ヒラコハクガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/3 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hirasea acuta acuta ヒメカドエンザガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hirasea acuta acutissima カドエンザガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hirasea chichijimana チチジマエンザガイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hirasea diplomphalus diplomphalus マルクボエンザガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hirasea insignis クチヒダエンザガイ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hirasea nesiotica nesiotica ナカタエンザガイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/137 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hirasea operculina ヘタナリエンザガイ | EN | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/137 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Nipponochlamys kumensis クメジマベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Nipponochlamys lineolata マキスジベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Nipponochlamys takahashii タカハシベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Parakaliella austeniana オオステンキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Parakaliella kikaigashimae キカイキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Sitalina sp. オオカサネシタラ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Vitrinula chaunax オガサワラレンズガイ（オガサワラベッコウ） | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Aegista inexpectata オモイガケナマイマイ | DD | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/17 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista intonsa モリサキオオベソマイマイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista kandai カンダマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista lepidophora lepidophora ウロコケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/17 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista marginata ヘリトリケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista nitens ミドリマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista optima ケショウマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista stenomphala イソムラマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista tadai イトヒキオオベソマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Aegista turrita トウガタホソマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Euhadra murayamai ムラヤママイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Euhadra nachicola ナチマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Euhadra sadoensis サドマイマイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Euhadra scaevola mikawa ミカワマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina anijimana アニジマカタマイマイ | DD | ✓ | — | ✓ | — | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina aureola コガネカタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina chichijimana チチジマカタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina exoptata ヒシカタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina hahajimana ヒメカタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina hayatoi フタオビカタマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina hirasei アナカタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.31 Gbp 80.0x | 2,603,910 575 bp | 1 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | 2024-07-03 |
| CR+EN 絶滅危惧I類 | Mandarina kaguya オトメカタマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina mandarina カタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina polita アケボノカタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina ponderosa ヌノメカタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Mandarina suenoae キノボリカタマイマイ | DD | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.35 Gbp 80.0x | 2,795,304 535 bp | 1 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | 2024-07-03 |
| CR+EN 絶滅危惧I類 | Mandarina tomiyamai コハクアナカタマイマイ | — | ✓ | — | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.36 Gbp 60.0x | 2,617,546 616 bp | 1 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | 2024-07-03 |
| CR+EN 絶滅危惧I類 | Mandarina trifasciata ミスジカタマイマイ | — | ✓ | — | — | — | No | — | — | — | 0 | 3 | 4 | 3/15 (20.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Nipponochloritis okiensis オキビロウドマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma amanoi アマノヤマタカマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma hemihelva ウラキヤマタカマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma iheyaensis イヘヤヤマタカマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma jacobii ヤコビマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma kanamarui カナマルマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma kumejimaensis クメジママイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma lepidophora ウロコマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma moellendorffiana moellendorffiana メルレンドルフマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma nakayamai ナカヤママイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma sadamii サダミマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma sakishimana サキシマヒシマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma shigetai アマミヤマタカマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma sororcula ウラジロヤマタカマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Satsuma wiegmanniana ヒラコベソマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| CR+EN 絶滅危惧I類 | Modiolatus hanleyi ハンレイヒバリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Anadara troscheli ヒメアカガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/30 (6.7%) | 4/134 (3.0%) | — |
| CR+EN 絶滅危惧I類 | Estellacar galactodes ササゲミミエガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/14 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Trisidos kiyonoi ビョウブガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/3 (0.0%) | 4/134 (3.0%) | — |
| CR+EN 絶滅危惧I類 | Ostrea denselamellosa イタボガキ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 636 Mbp 210.8x | 154 14.0 Mbp | 1 | 8 | 30 | 3/63 (4.8%) | 14/330 (4.2%) | 2022-08-15 |
| CR+EN 絶滅危惧I類 | Decatopecten sp. リュウキュウキンチャク | — | — | — | — | — | No | — | — | — | 0 | 0 | 13 | 0/3 (0.0%) | 7/157 (4.5%) | — |
| CR+EN 絶滅危惧I類 | Volachlamys hirasei ヤミノニシキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/2 (0.0%) | 7/157 (4.5%) | — |
| CR+EN 絶滅危惧I類 | Pegophysema bialata イセシラガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/2 (0.0%) | 10/189 (5.3%) | — |
| CR+EN 絶滅危惧I類 | Lunulicardia hemicardium ハートガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 25 | 0/4 (0.0%) | 13/212 (6.1%) | — |
| CR+EN 絶滅危惧I類 | Hiatula boeddinghausi フジナミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/6 (0.0%) | 2/31 (6.5%) | — |
| CR+EN 絶滅危惧I類 | Leptomya adunca ナノハナガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Semele cordiformis フルイガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/27 (3.7%) | — |
| CR+EN 絶滅危惧I類 | Azorinus scheepmakeri オオズングリアゲマキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 1/3 (33.3%) | 2/14 (14.3%) | — |
| CR+EN 絶滅危惧I類 | Strigilla tomlini オガタザクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/82 (3.7%) | — |
| CR+EN 絶滅危惧I類 | Salmacoma nobilis モモイロサギガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/82 (3.7%) | — |
| CR+EN 絶滅危惧I類 | Limecola petalum タカホコシラトリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| CR+EN 絶滅危惧I類 | Serratina diaphana イチョウシラトリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/4 (0.0%) | 3/82 (3.7%) | — |
| CR+EN 絶滅危惧I類 | Tellinella virgata ニッコウガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/4 (0.0%) | 3/82 (3.7%) | — |
| CR+EN 絶滅危惧I類 | Mactra sp. A ナガタママキ | — | — | — | — | — | No | — | — | — | 0 | 2 | 11 | 2/19 (10.5%) | 7/49 (14.3%) | — |
| CR+EN 絶滅危惧I類 | Mactra sp. B オトメタママキ | — | — | — | — | — | No | — | — | — | 0 | 2 | 11 | 2/19 (10.5%) | 7/49 (14.3%) | — |
| CR+EN 絶滅危惧I類 | Meropesta sinojaponica チリメンユキガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/1 (0.0%) | 7/49 (14.3%) | — |
| CR+EN 絶滅危惧I類 | Raeta pellicula ヤチヨノハナガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/2 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Aphrodora kurodai ウスハマグリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Circe scripta タイワンシラオガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/8 (0.0%) | 11/280 (3.9%) | — |
| CR+EN 絶滅危惧I類 | Dosinia biscocta アツカガミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/24 (0.0%) | 11/280 (3.9%) | — |
| CR+EN 絶滅危惧I類 | Dosinia corrugata ウラカガミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/24 (0.0%) | 11/280 (3.9%) | — |
| CR+EN 絶滅危惧I類 | Meretrix sp. トゥドゥマリハマグリ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 16 | 1/24 (4.2%) | 11/280 (3.9%) | — |
| CR+EN 絶滅危惧I類 | Pitar limatulus マダライオウハマグリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 16 | 0/9 (0.0%) | 11/280 (3.9%) | — |
| CR+EN 絶滅危惧I類 | Arthritica japonica ガンヅキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/66 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Borniopsis ariakensis アリアケケボリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/66 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Devonia semperi ヒナノズキン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/39 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Fronsella ohshimai ハナビラガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Galeommella utinomii オウギウロコガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Nipponomysella tanabensis タナベヤドリガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/39 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Peregrinamor gastrochaenans シマノハテマゴコロガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/7 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Platomysia rugata オキナノエガオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/66 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Sagamiscintilla thalassemicola ミドリユムシヤドリガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/15 (6.7%) | 1/51 (2.0%) | — |
| CR+EN 絶滅危惧I類 | Basterotia gouldi イソカゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/8 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Aspidopholas yoshimurai イシゴロモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/36 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Potamocorbula amurensis ヌマコダキガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/58 (0.0%) | 0/72 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Laternula impura コオキナガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/18 (0.0%) | 0/18 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Sinonovacula constricta アゲマキ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 1.22 Gbp 561.0x | 2,450 977 kbp | 2 | 2 | 4 | 1/2 (50.0%) | 2/14 (14.3%) | 2019-08-08 |
| CR+EN 絶滅危惧I類 | Solen soleneae ジャングサマテ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/19 (5.3%) | — |
| VU 絶滅危惧II類 | Rimula cumingii セムシマドアキガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/32 (0.0%) | 1/203 (0.5%) | — |
| VU 絶滅危惧II類 | Sukashitrochus carinatus スカシエビス | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Ogasawarana microtheca コガラヨシワラヤマキサゴ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Ogasawarana ogasawarana オガサワラヤマキサゴ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Neritilia mimotoi ツバサコハクカノコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/6 (0.0%) | — |
| VU 絶滅危惧II類 | Georissa shikokuensis ベニゴマオカタニシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/62 (0.0%) | 0/63 (0.0%) | — |
| VU 絶滅危惧II類 | Neritodryas cornea オカイシマキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/195 (0.5%) | — |
| VU 絶滅危惧II類 | Septaria cumingiana カミングフネアマガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/5 (0.0%) | 1/195 (0.5%) | — |
| VU 絶滅危惧II類 | Smaragdia sp. ウミヒメカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/195 (0.5%) | — |
| VU 絶滅危惧II類 | Phenacolepas crenulata ユキスズメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/50 (0.0%) | — |
| VU 絶滅危惧II類 | Awalycaeus abei アツブタムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Chamalycaeus itonis shiotai ヤサガタイトウムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/16 (0.0%) | — |
| VU 絶滅危惧II類 | Chamalycaeus laevis ベニムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Chamalycaeus oshimanus オオシマムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Chamalycaeus sadoensis サドムシオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Chamalycaeus satsumanus laevicervix ヌメクビムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Chamalycaeus tsushimanus ツシマムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Cipangocharax akioi コウツムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Cipangocharax kiuchii トウゲンムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Cipangocharax okamurai オカムラムシオイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Cyclophorus turgidus angulatus リュウキュウヤマタニシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/57 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Japonia inouei イノウエヤマトガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Japonia katorii トウカイヤマトガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Japonia shigetai モジャモジャヤマトガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Japonia sp. ヨナグニヤマトガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Japonia tokunoshimana okinoerabuensis オキノエラブヤマトガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Japonia tokunoshimana tokunoshimana トクノシマヤマトガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| VU 絶滅危惧II類 | Arinia japonica シリブトゴマガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina kumejimana クメジマゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina luchuana リュウキュウゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina lyrata lyrata クニガミゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina lyrata tokunoshimana トクノシマゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina oshimae オオシマゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina septentrionalis エゾゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina turris chineni イトカケゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina ultima ツシマゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Diplommatina yonakunijimana ヨナグニゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| VU 絶滅危惧II類 | Pupinella oshimae tokunoshimana トクノシマアズキガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/15 (0.0%) | — |
| VU 絶滅危惧II類 | Cipangopaludina chinensis laeta マルタニシ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/16 (0.0%) | 1/266 (0.4%) | — |
| VU 絶滅危惧II類 | Batillaria zonalis イボウミニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/8 (12.5%) | 1/8 (12.5%) | — |
| VU 絶滅危惧II類 | Cerithium coralium コゲツノブエ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/41 (0.0%) | 0/93 (0.0%) | — |
| VU 絶滅危惧II類 | Semisulcospira fuscata クロカワニナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| VU 絶滅危惧II類 | Pirenella asiatica ヤエヤマヘナタリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/10 (0.0%) | 0/48 (0.0%) | — |
| VU 絶滅危惧II類 | Pirenella pupiformis カワアイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/10 (0.0%) | 0/48 (0.0%) | — |
| VU 絶滅危惧II類 | Terebralia sulcata マドモチウミニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/48 (0.0%) | — |
| VU 絶滅危惧II類 | Finella pupoides サナギモツボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/3 (0.0%) | — |
| VU 絶滅危惧II類 | Stenomelania sp. B タケノコカワニナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/19 (0.0%) | 1/119 (0.8%) | — |
| VU 絶滅危惧II類 | Naticarius concinnus フロガイダマシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/8 (25.0%) | 3/74 (4.1%) | — |
| VU 絶滅危惧II類 | Naticarius onca アラゴマフダマ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/8 (25.0%) | 3/74 (4.1%) | — |
| VU 絶滅危惧II類 | Polinices mellosus ロウイロトミガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/11 (0.0%) | 3/74 (4.1%) | — |
| VU 絶滅危惧II類 | Akiyoshia kobayashii コバヤシミジンツボ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| VU 絶滅危惧II類 | Akiyoshia uenoi アキヨシミジンツボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| VU 絶滅危惧II類 | Moria nipponica ホラアナミジンニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/177 (0.6%) | — |
| VU 絶滅危惧II類 | Assiminea sp. E ムツカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Assiminea sp. F マンゴクウラカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Assiminea sp. G マツシマカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Assiminea sp. H マツカワウラカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Assiminea sp. I オオシンデンカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Assimineidae gen. C & sp. コーヒーイロカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Assimineidae gen. D & sp. カハタレカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Cavernacmella minima キビオカチグサ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Cavernacmella yamamotonis ヤマモトゴマオカチグサ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Ditropisena sp. A ミニカドカド | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Ditropisena sp. B エレガントカドカド | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Ditropisena sp. C デリケートカドカド | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Ovassiminea sp. ウラウチコダマカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Pseudomphala miyazakii アズキカワザンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/64 (0.0%) | — |
| VU 絶滅危惧II類 | Bithynia inabai イナバマメタニシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/15 (0.0%) | 0/37 (0.0%) | — |
| VU 絶滅危惧II類 | Gabbia kiusiuensis ヒメマルマメタニシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/37 (0.0%) | — |
| VU 絶滅危惧II類 | Clenchiella iriomotensis ヤイマカチドキシタダミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/9 (0.0%) | — |
| VU 絶滅危惧II類 | Hyala delicata ゴマツボモドキ（シリオレミジンニナ） | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/19 (0.0%) | — |
| VU 絶滅危惧II類 | Liroceratia sulcata ミジンゴマツボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Pellamora sp. ウチノミツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/19 (0.0%) | — |
| VU 絶滅危惧II類 | Wakauraia sakaguchii ワカウラツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/19 (0.0%) | — |
| VU 絶滅危惧II類 | Blanfordia bensoni オカマメタニシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/90 (1.1%) | — |
| VU 絶滅危惧II類 | Oncomelania minima ナタネミズツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/3 (33.3%) | 1/90 (1.1%) | — |
| VU 絶滅危惧II類 | Pomatiopsidae gen. ooyagii シモキタシブキツボ | — | — | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/90 (1.1%) | 1/90 (1.1%) | — |
| VU 絶滅危惧II類 | Rissoina costulata スジウネリチョウジガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/7 (0.0%) | — |
| VU 絶滅危惧II類 | Stosicia annulata ゴマツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/7 (0.0%) | — |
| VU 絶滅危惧II類 | Stenothyra japonica ミズゴマツボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/17 (0.0%) | — |
| VU 絶滅危惧II類 | Stenothyra recondita エゾミズゴマツボ（カラフトミズゴマツボ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/17 (0.0%) | — |
| VU 絶滅危惧II類 | Circulus duplicatus アラウズマキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Pseudoliotia asteriscus ヒメシラギク（シラギクマガイ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/13 (0.0%) | — |
| VU 絶滅危惧II類 | Sigaretornus sp. A イソマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/13 (0.0%) | — |
| VU 絶滅危惧II類 | Sigaretornus sp. B ガタチンナン | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/13 (0.0%) | — |
| VU 絶滅危惧II類 | Teinostoma lucidum ウミコハクガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/13 (0.0%) | — |
| VU 絶滅危惧II類 | Truncatella sp. A アマミクビキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/15 (0.0%) | — |
| VU 絶滅危惧II類 | Truncatella sp. F カイグンボウクビキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/15 (0.0%) | — |
| VU 絶滅危惧II類 | Acrilla acuminata ウネナシイトカケ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/56 (0.0%) | — |
| VU 絶滅危惧II類 | Hypermastus lacteus ヒモイカリナマコツマミガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Mucronalia exilis ヤセフタオビツマミガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/72 (0.0%) | — |
| VU 絶滅危惧II類 | Engina menkeana ナガゴマフホラダマシ（ゴマフホラダマシ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/10 (0.0%) | 2/358 (0.6%) | — |
| VU 絶滅危惧II類 | Reticunassa praematurata オマセムシロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| VU 絶滅危惧II類 | Nassarius arcularia オリイレヨフバイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| VU 絶滅危惧II類 | Babylonia kirana ウスイロバイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/13 (7.7%) | 2/358 (0.6%) | — |
| VU 絶滅危惧II類 | Vexillum balteolatum ミノムシガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/125 (0.0%) | — |
| VU 絶滅危惧II類 | Vexillum rufomaculatum チビツクシ（ムラクモツクシ） | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/125 (0.0%) | — |
| VU 絶滅危惧II類 | Ceratostoma rorifluum ハネナシヨウラク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/4 (0.0%) | 7/964 (0.7%) | — |
| VU 絶滅危惧II類 | Conus boeticus ツヤイモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 5/417 (1.2%) | 5/590 (0.8%) | — |
| VU 絶滅危惧II類 | Conus fulmen ベッコウイモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 5/417 (1.2%) | 5/590 (0.8%) | — |
| VU 絶滅危惧II類 | Duplicaria evoluta イワカワトクサ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/23 (0.0%) | 0/342 (0.0%) | — |
| VU 絶滅危惧II類 | Trigonostoma scalariformis オリイレボラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/59 (0.0%) | — |
| VU 絶滅危惧II類 | Cypraea luchuana リュウキュウダカラ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/237 (0.0%) | — |
| VU 絶滅危惧II類 | Ebala sp. イリエゴウナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/2 (0.0%) | — |
| VU 絶滅危惧II類 | Cincinna japonica ニホンミズシタダミ | DD | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Melanochlamys ezoensis エゾキセワタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/94 (0.0%) | — |
| VU 絶滅危惧II類 | Melanochlamys fukudai ヤミヨキセワタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/94 (0.0%) | — |
| VU 絶滅危惧II類 | Acteocina decoratoides コメツブツララ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/23 (0.0%) | — |
| VU 絶滅危惧II類 | Cylichnatys yamakawai カミスジカイコガイダマシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Lactiforis takii ウミマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/17 (0.0%) | — |
| VU 絶滅危惧II類 | Brachystomia umboniocola イボキサゴナカセクチキレモドキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/71 (0.0%) | — |
| VU 絶滅危惧II類 | Syrnola tenuisculpta ヌノメホソクチキレ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Radix onychia オウミガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/251 (0.4%) | 4/420 (1.0%) | — |
| VU 絶滅危惧II類 | Gyraulus soritai ミズコハクガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/17 (0.0%) | 7/668 (1.0%) | — |
| VU 絶滅危惧II類 | Helicorbis cantori クルマヒラマキガイ（レンズヒラマキガイ） | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/2 (0.0%) | 7/668 (1.0%) | — |
| VU 絶滅危惧II類 | Aiteng mysticus ヒミツナメクジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/3 (0.0%) | — |
| VU 絶滅危惧II類 | Auriculastra duplicata ナラビオカミミガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Blauneria leonardi サカマキオカミミガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Ellobium chinense オカミミガイ | DD | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 949 Mbp 125.0x | 83,461 21.3 kbp | 1 | 1 | 1 | 1/8 (12.5%) | 1/149 (0.7%) | 2023-11-20 |
| VU 絶滅危惧II類 | Laemodonta siamensis クリイロコミミガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Laemodonta sp. B コベソコミミガイ（マルコミミガイ） | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Melampus nucleolus ウルシヌリハマシイノミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Melampus ovuloides デンジハマシイノミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Melampus sculptus ニワタズミハマシイノミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Melampus sincaporensis キヌカツギハマシイノミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Melampus sp. オウトウハマシイノミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/149 (0.7%) | — |
| VU 絶滅危惧II類 | Onchidium sp. ドロアワモチ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 6 | 0/13 (0.0%) | 5/133 (3.8%) | — |
| VU 絶滅危惧II類 | Paraonchidium fungiforme キボシアワモチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Paraonchidium keiense ヒメキボシアワモチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Neosuccinea kofui コウフオカモノアラガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/180 (0.0%) | — |
| VU 絶滅危惧II類 | Elasmias kitaiwojimanum イオウジマノミガイ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/53 (0.0%) | — |
| VU 絶滅危惧II類 | Lamellidea biplicata トウガタノミガイ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Lamellidea ogasawarana オガサワラノミガイ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Tornatellides boeningi ノミガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/53 (0.0%) | — |
| VU 絶滅危惧II類 | Enteroplax yaeyamaensis ヤエヤマクチミゾガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Eostrobilops nipponica nipponica マツシマクチミゾガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/3 (0.0%) | — |
| VU 絶滅危惧II類 | Bensonella plicidens クチマガリスナガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Ptychalaea dedecora エリマキガイ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/115 (0.0%) | 0/151 (0.0%) | — |
| VU 絶滅危惧II類 | Vertigo ovata ovata ナタネキバサナギガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/115 (0.0%) | 0/151 (0.0%) | — |
| VU 絶滅危惧II類 | Vertigo japonica ヤマトキバサナギガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/115 (0.0%) | 0/151 (0.0%) | — |
| VU 絶滅危惧II類 | Luchuena fulva ウスチャイロキセルモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Luchuena minatoi ダンジョキセルモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Luchuena nesiotica チャイロキセルモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Megalophaedusa dalli デールギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa decussata ハブタエギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa gracilispira ホソヒメギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa ignobilis アベギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa iijimakuniakii ツバクロイワギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa iyoensis イヨギセル | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa kanjiookuboi オクシリギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa kawamotoi カワモトギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa kubinaga クビナガギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa kurozuensis クロズギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa kyotoensis キョウトギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa mitsukurii ミツクリギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa miyazakii ミヤザキギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa nankaidoensis yanoi ショウドシマギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa pachyspira シリブトギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa pilsbryi カギヒダギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa puellaris ウブギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Megalophaedusa yagurai ヤグラギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Solitariphaedusa miyoshii ミヨシギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa callistochila キンチャクギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa caloptyx caloptyx イトカケノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa caloptyx subtilis ヤクスギイトカケノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa kamoharai カモハラギセル | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa mima mima ザレギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa mima tokunoshimana トクノシマギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa nishinoshimana ニシノシマギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa oshimae degenerata クサレギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa tabukii タブキギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa tryoni トライオンギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Stereophaedusa ultima ヒメナミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Tauphaedusa senkakuensis センカクコギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/5 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Tosaphaedusa cincticollis ナカムラギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/5 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx cladoptyx エダヒダノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx entospira ウチマキノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx exodonta ソトバウチマキノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx exulans ホソウチマキノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx hedleyi チビノミギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx munus ツムガタノミギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx noviluna ミカヅキノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx oxypomatia カドシタノミギセル | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Zaptyx takarai タカラノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| VU 絶滅危惧II類 | Sinoennea densecostata コメツブダワラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/5 (0.0%) | — |
| VU 絶滅危惧II類 | Sinoennea miyakojimana ミヤコダワラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/5 (0.0%) | — |
| VU 絶滅危惧II類 | Bekkochlamys masakii マサキベッコウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| VU 絶滅危惧II類 | Bekkochlamys subrejecta ツシマベッコウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| VU 絶滅危惧II類 | Helicarionidae gen. & sp. ベッコウマイマイ科の１種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/170 (0.0%) | 0/170 (0.0%) | — |
| VU 絶滅危惧II類 | Japanochlamys crenata コンゴウクリイロベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/11 (0.0%) | — |
| VU 絶滅危惧II類 | Lamprocystis hahajimana hahajimana ハハジマヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/13 (0.0%) | — |
| VU 絶滅危惧II類 | Luchuconulus edgariana スミスヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Nipponochlamys sp. ヨナグニベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Nipponochlamys subelimata トクノシマベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Otesiopsis japonica レンズガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Otesiopsis kanmuriyamensis カンムリレンズガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Takemasaia eikoae エイコベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Deroceras sp. クロツノナメクジ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/258 (0.4%) | 1/262 (0.4%) | — |
| VU 絶滅危惧II類 | Aegista calcicola イシマキシロマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista cavitectum タシママイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista eumenes pergranosa アラハダシロマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista fausta サチマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista friedeliana vestita オオシマフリイデルマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista hachijoensis ツバキカドマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista kiusiuensis tokunovaga トクノシマケマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista lepidophora scutifera カドマルウロコケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/17 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista mayasana マヤサンマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista minima マメヒロベソマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista nunobikiensis ヌノビキケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista omiensis オウミケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista proba goniosomoides ミヤマオオベソマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista scepasma イトマンケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista squarrosa squarrosa マルテンスオオベソマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista squarrosa tokunoshimana トクノシマオオベソマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista takarai タカラホソマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Euhadra awaensis occidentalis イワミマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Euhadra grata echigoensis エチゴマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Euhadra grata emurai エムラマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Euhadra grata grata オオタキマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Euhadra grata tobisimae トビシママイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Euhadra latispira latispira ハクサンマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Euhadra scaevola scaevola ミヤマヒダリマキマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Euhadra yakushimana ヤクシママイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Lepidopisum conospira カタマメマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Nesiohelix irrediviva エラブマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/7 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Nesiohelix solida アツマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/7 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Paraegista apoiensis アポイマイマイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Paraegista takahidei タカヒデマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/12 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Aegista hiroshifukudai チョウシュウシロマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Moellendorffia eucharistus ケハダシワクチマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Neochloritis tomiyamai ハジメテビロウドマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Nipponochloritis bracteata tsukubaensis ツクバビロウドマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Nipponochloritis fragosa オオウスビロウドマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Nipponochloritis hirasei ヒラマキビロウドマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Nipponochloritis perpunctata ヒメビロウドマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Nipponochloritis silvatica カワリダネビロウドマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Nipponochloritis takedai ミニビロウドマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Nipponochloritis tosana トサビロウドマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma adelinae クマドリヤマタカマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma atrata ヤンバルマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma cardiostoma ココロマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma eucosmia erabuana オキノエラブヤマタカマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma eucosmia eucosmia オキナワヤマタカマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma fausta ヤセアナナシマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma mercatoria euterpe クンチャンマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma moellendorffiana thaanumi ミノブマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma omoro オモロヤマタカマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma oshimae daemonorum キカイオオシママイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma perversa リュウキュウヒダリマキマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma rugosa チリメンマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma selasia ツヤマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma sp. シズオカマイマイ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma sp. B トナキマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma textilis オオツヤマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma tokunoshimana トクノシマヤマタカマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Satsuma tsurugisanica ツルギサンマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Yakuchloritis albolabris クチジロビロウドマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Yakuchloritis hoshiyamai ホシヤマビロウドマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1495 (0.3%) | — |
| VU 絶滅危惧II類 | Solemya japonica アサヒキヌタレガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/56 (1.8%) | — |
| VU 絶滅危惧II類 | Jolya arata ヌバタママクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 41 | 0/1 (0.0%) | 19/1548 (1.2%) | — |
| VU 絶滅危惧II類 | Anadara crebricostata メオトサルボオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/30 (6.7%) | 4/134 (3.0%) | — |
| VU 絶滅危惧II類 | Anadara globosa クマサルボオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/30 (6.7%) | 4/134 (3.0%) | — |
| VU 絶滅危惧II類 | Tegillarca granosa ハイガイ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 915 Mbp 10.0x | 3,631 463 kbp | 2 | 2 | 5 | 1/3 (33.3%) | 4/134 (3.0%) | 2020-06-29 |
| VU 絶滅危惧II類 | Tucetona auriflua ウチワガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/22 (0.0%) | — |
| VU 絶滅危惧II類 | Anomiostrea coralliophila サンゴガキ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/1 (0.0%) | 7/157 (4.5%) | — |
| VU 絶滅危惧II類 | Magallana ariakensis スミノエガキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 30 | 3/10 (30.0%) | 14/330 (4.2%) | — |
| VU 絶滅危惧II類 | Magallana bilineata ミナミマガキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 30 | 3/10 (30.0%) | 14/330 (4.2%) | — |
| VU 絶滅危惧II類 | Pinna atropurpurea スエヒロガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/13 (7.7%) | 3/71 (4.2%) | — |
| VU 絶滅危惧II類 | Cristaria clessini メンカラスガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/5 (0.0%) | 8/869 (0.9%) | — |
| VU 絶滅危惧II類 | Inversidens brandtii オバエボシガイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/2 (0.0%) | 8/869 (0.9%) | — |
| VU 絶滅危惧II類 | Inversiunio reinianus オトコタテボシガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/6 (0.0%) | 8/869 (0.9%) | — |
| VU 絶滅危惧II類 | Inversiunio yanagawensis ニセマツカサガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/6 (0.0%) | 8/869 (0.9%) | — |
| VU 絶滅危惧II類 | Lanceolaria oxyrhyncha ササノハガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/9 (0.0%) | 8/869 (0.9%) | — |
| VU 絶滅危惧II類 | Obovalis omiensis カタハガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/1 (0.0%) | 8/869 (0.9%) | — |
| VU 絶滅危惧II類 | Sinanodonta calipygos マルドブガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/43 (2.3%) | 8/869 (0.9%) | — |
| VU 絶滅危惧II類 | Cadakia punctata クチベニツキガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Codakia paytenorum ウラキツキガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/6 (0.0%) | 10/189 (5.3%) | — |
| VU 絶滅危惧II類 | Fimbria soverbii カゴガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/1 (0.0%) | — |
| VU 絶滅危惧II類 | Fragum carinatum ヒシガイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 6 | 25 | 3/12 (25.0%) | 13/212 (6.1%) | — |
| VU 絶滅危惧II類 | Vasticardium rubicundum compunctum イレズミザルガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 25 | 0/14 (0.0%) | 13/212 (6.1%) | — |
| VU 絶滅危惧II類 | Gari lessoni ウスムラサキアシガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/12 (8.3%) | 2/31 (6.5%) | — |
| VU 絶滅危惧II類 | Psammotaea inflata ミナトマスオ | — | — | — | — | — | No | — | — | — | 0 | 0 | 3 | 0/1 (0.0%) | 2/31 (6.5%) | — |
| VU 絶滅危惧II類 | Hiatula adamsii ムラサキガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/6 (0.0%) | 2/31 (6.5%) | — |
| VU 絶滅危惧II類 | Montrouzieria clathrata コバコガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Cadella crebrimaculata ホシヤマナミノコザラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/3 (0.0%) | 3/82 (3.7%) | — |
| VU 絶滅危惧II類 | Cadella sp. リュウキュウクサビザラ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/3 (0.0%) | 3/82 (3.7%) | — |
| VU 絶滅危惧II類 | Cyclotellina remies モチヅキザラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Macalia bruguieri アマサギガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Scissulina dispar チガイザクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Serratina perplexa ヒワズウネイチョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/4 (0.0%) | 3/82 (3.7%) | — |
| VU 絶滅危惧II類 | Iridona iridescens テリザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/82 (3.7%) | — |
| VU 絶滅危惧II類 | Dallitellina rostrata トンガリベニガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Quadrans gargadia オオトゲウネガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/82 (3.7%) | — |
| VU 絶滅危惧II類 | Tellinides timorensis ヘラサギガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| VU 絶滅危惧II類 | Corbicula leana マシジミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/483 (0.4%) | 2/503 (0.4%) | — |
| VU 絶滅危惧II類 | Corbicula sandai セタシジミ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/483 (0.4%) | 2/503 (0.4%) | — |
| VU 絶滅危惧II類 | Geloina expansa リュウキュウヒルギシジミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/10 (0.0%) | 2/503 (0.4%) | — |
| VU 絶滅危惧II類 | Geloina fissidens タイワンヒルギシジミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/10 (0.0%) | 2/503 (0.4%) | — |
| VU 絶滅危惧II類 | Geloina yaeyamensis ヤエヤマヒルギシジミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/10 (0.0%) | 2/503 (0.4%) | — |
| VU 絶滅危惧II類 | Glauconome angulata ハナグモリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/8 (0.0%) | — |
| VU 絶滅危惧II類 | Anatinella nicobarica チトセノハナガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Coelomactra antiquata アリソガイ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 792 Mbp 46.8x | 476 8.65 Mbp | 1 | 2 | 11 | 2/19 (10.5%) | 7/49 (14.3%) | 2025-01-28 |
| VU 絶滅危惧II類 | Mactra grandis リュウキュウアリソガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/19 (10.5%) | 7/49 (14.3%) | — |
| VU 絶滅危惧II類 | Mactra pulchella トウカイタママキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 11 | 2/19 (10.5%) | 7/49 (14.3%) | — |
| VU 絶滅危惧II類 | Mactrotoma depressa ヒナミルクイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/1 (0.0%) | 7/49 (14.3%) | — |
| VU 絶滅危惧II類 | Tresus keenae ミルクイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/3 (0.0%) | 7/49 (14.3%) | — |
| VU 絶滅危惧II類 | Dosinia aspera ツキカガミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/24 (0.0%) | 11/280 (3.9%) | — |
| VU 絶滅危惧II類 | Dosinia troscheli ヤタノカガミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/24 (0.0%) | 11/280 (3.9%) | — |
| VU 絶滅危惧II類 | Meretrix lusoria ハマグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 16 | 1/24 (4.2%) | 11/280 (3.9%) | — |
| VU 絶滅危惧II類 | Pitar citrinus ユウカゲハマグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/9 (0.0%) | 11/280 (3.9%) | — |
| VU 絶滅危惧II類 | Pitar sulfureus イオウハマグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/9 (0.0%) | 11/280 (3.9%) | — |
| VU 絶滅危惧II類 | Tapes literatus リュウキュウアサリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/7 (0.0%) | 11/280 (3.9%) | — |
| VU 絶滅危惧II類 | Barrimysia cumingii アケボノガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Barrimysia siphonosomae ホシムシアケボノガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Borniopsis tsurumaru ツルマルケボリガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/66 (0.0%) | — |
| VU 絶滅危惧II類 | Byssobornia adamsi セワケガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/66 (0.0%) | — |
| VU 絶滅危惧II類 | Divariscintilla toyohiwakensis ニッポンヨーヨーシジミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/8 (0.0%) | 1/51 (2.0%) | — |
| VU 絶滅危惧II類 | Ephippodonta gigas オオツヤウロコガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/51 (2.0%) | — |
| VU 絶滅危惧II類 | Tellimya fujitaniana フジタニコハクノツユ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Salpocola philippinensis フィリピンハナビラガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/66 (0.0%) | — |
| VU 絶滅危惧II類 | Barnea japonica ウミタケ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/36 (0.0%) | — |
| VU 絶滅危惧II類 | Cryptomya busoensis ヒメマスオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Distugonia decurtata オフクマスオ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Exolaternula sp. オヤイヅオキナガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| VU 絶滅危惧II類 | Agriodesma navicula オビクイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/10 (0.0%) | — |
| VU 絶滅危惧II類 | Thracia concinna シナヤカスエモノガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/8 (12.5%) | 1/9 (11.1%) | — |
| VU 絶滅危惧II類 | Solen kikuchii チゴマテ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/19 (5.3%) | — |
| VU 絶滅危惧II類 | Solen sp. ホソバラフマテ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/19 (5.3%) | — |
| NT 準絶滅危惧 | Patelloida conulus ツボミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/34 (0.0%) | 4/186 (2.2%) | — |
| NT 準絶滅危惧 | Macroschisma cuspidatum ヤジリスカシガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/203 (0.5%) | — |
| NT 準絶滅危惧 | Umbonium moniliferum イボキサゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/5 (0.0%) | 3/228 (1.3%) | — |
| NT 準絶滅危惧 | Umbonium suturale タイワンキサゴ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/5 (0.0%) | 3/228 (1.3%) | — |
| NT 準絶滅危惧 | Neritilia rubida コハクカノコ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/6 (0.0%) | — |
| NT 準絶滅危惧 | Neritilia vulgaris ツブコハクカノコ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/6 (0.0%) | — |
| NT 準絶滅危惧 | Georissa hukudai フクダゴマオカタニシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/62 (0.0%) | 0/63 (0.0%) | — |
| NT 準絶滅危惧 | Georissa japonica ゴマオカタニシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/62 (0.0%) | 0/63 (0.0%) | — |
| NT 準絶滅危惧 | Georissa luchuana リュウキュウゴマオカタニシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/62 (0.0%) | 0/63 (0.0%) | — |
| NT 準絶滅危惧 | Clithon pauluccianus レモンカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Clithon sp. ヒメカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Clithon squarrosus ウロコイシマキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neripteron auriculata コウモリカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neripteron sp. A ヒロクチカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neripteron sp. B フリソデカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neripteron spiralis キジビキカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neripteron subauriculata ツバサカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Nerita planospira ヒラマキアマオブネ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/61 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neritina asperulata アラハダカノコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neritina petiti アカグチカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neritina siquijorensis ニセヒロクチカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neritina sp. A クロズミアカグチカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neritina sp. B ウスベニツバサカノコ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Neritina turrita シマカノコ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/5 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Septaria lineata ベッコウフネアマガイ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/5 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Smaragdia rangiana クサイロカノコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Smaragdia souverbiana キンランカノコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/195 (0.5%) | — |
| NT 準絶滅危惧 | Phenacolepas pulchella ミヤコドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/50 (0.0%) | — |
| NT 準絶滅危惧 | Phenacolepas sp. ヒナユキスズメ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/50 (0.0%) | — |
| NT 準絶滅危惧 | Phenacolepas tenuisculpta タオヤメユキスズメ（ヌノメミヤコドリ） | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/50 (0.0%) | — |
| NT 準絶滅危惧 | Chamalycaeus expanstoma クチビラキムシオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Chamalycaeus satsumanus satsumanus サツマムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Chamalycaeus satsumanus tanegashimae タネガシマムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Chamalycaeus tadai タダムシオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Chamalycaeus vinctus クビマキムシオイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Cyclophorus hirasei オオヤマタニシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/57 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Cyclophorus turgidus miyakoensis ミヤコヤマタニシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/57 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Cyclophorus turgidus radians ヤエヤマヤマタニシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/57 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Cyclotus campanulatus tanegashimanus タネガシマアツブタガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Cyclotus taivanus peraffinis ヤエヤマアツブタガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Japonia gouldi ケハダヤマトガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Japonia hispida ケブカヤマトガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Japonia sadoensis サドヤマトガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Japonia striatula イトマキヤマトガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Leptopoma nitidum アオミオカタニシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Platyrhaphe hirasei nudus ハダカアツブタガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Platyrhaphe hirasei yaeyamaensis ヤエヤマヒラセアツブタガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Platyrhaphe hirasei yonakunijimanus ヨナクニアツブタガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/261 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina ampla オオコベルトゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina circumstomata マルクチゴマガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina danzyonarum ダンジョゴマガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina gotoensis ゴトウゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina immersidens ミヤコゴマガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina nesiotica ニヨリゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina saginata ハラブトゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina turris turris トウガタゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina ujiinsularis ウジグントウゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Diplommatina yakushimae ヤクシマゴマガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/55 (0.0%) | 0/159 (0.0%) | — |
| NT 準絶滅危惧 | Heterogen japonica オオタニシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/266 (0.4%) | — |
| NT 準絶滅危惧 | Heterogen longispira ナガタニシ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/266 (0.4%) | — |
| NT 準絶滅危惧 | Batillaria multiformis ウミニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/8 (12.5%) | 1/8 (12.5%) | — |
| NT 準絶滅危惧 | Clypeomorus bifasciata カヤノミカニモリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/12 (0.0%) | 0/93 (0.0%) | — |
| NT 準絶滅危惧 | Semisulcospira arenicola ホソマキカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Semisulcospira decipiens タテヒダカワニナ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Semisulcospira morii モリカワニナ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Semisulcospira multigranosa イボカワニナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Semisulcospira niponica ヤマトカワニナ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Semisulcospira reticulata カゴメカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Semisulcospira shiraishiensis シライシカワニナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Semisulcospira takeshimensis タケシマカワニナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Semisulcospira kurodai クロダカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| NT 準絶滅危惧 | Cerithidea moerchii フトヘナタリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/21 (0.0%) | 0/48 (0.0%) | — |
| NT 準絶滅危惧 | Pirenella nipponica ヘナタリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/10 (0.0%) | 0/48 (0.0%) | — |
| NT 準絶滅危惧 | Terebralia palustris キバウミニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/48 (0.0%) | — |
| NT 準絶滅危惧 | Melanoides tuberculatus ヌノメカワニナ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 971 Mbp 80.0x | 974,018 1.06 kbp | 1 | 1 | 1 | 1/30 (3.3%) | 1/119 (0.8%) | 2023-06-01 |
| NT 準絶滅危惧 | Sermyla riqueti ネジヒダカワニナ | LC | ✓ | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/119 (0.8%) | — |
| NT 準絶滅危惧 | Tarebia granifera イボアヤカワニナ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/119 (0.8%) | — |
| NT 準絶滅危惧 | Thiara scabra pagoda トゲカワニナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/119 (0.8%) | — |
| NT 準絶滅危惧 | Lacuna carinifera モロハタマキビ（セトウチヘソカドタマキビ） | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/6 (0.0%) | — |
| NT 準絶滅危惧 | Littoraria conica イロタマキビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/37 (0.0%) | 4/201 (2.0%) | — |
| NT 準絶滅危惧 | Cryptonatica adamsiana アダムスタマガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/9 (0.0%) | 3/74 (4.1%) | — |
| NT 準絶滅危惧 | Eunaticina papilla ネコガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/1 (0.0%) | 3/74 (4.1%) | — |
| NT 準絶滅危惧 | Mammilla melanostmoides ヒロクチリスガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 3 | 0/8 (0.0%) | 3/74 (4.1%) | — |
| NT 準絶滅危惧 | Natica buriasensis カスミコダマ | — | — | — | — | — | No | — | — | — | 0 | 0 | 3 | 0/3 (0.0%) | 3/74 (4.1%) | — |
| NT 準絶滅危惧 | Notocochlis robillardi テンセイタマガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 3 | 0/4 (0.0%) | 3/74 (4.1%) | — |
| NT 準絶滅危惧 | Gennaeosinum bathyraphe オリイレシラタマ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Sinum incisum ツガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/2 (0.0%) | 3/74 (4.1%) | — |
| NT 準絶滅危惧 | Sinum planulatum ツツミガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/2 (0.0%) | 3/74 (4.1%) | — |
| NT 準絶滅危惧 | Angustassiminea castanea クリイロカワザンショウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Assiminea estuarina ツブカワザンショウ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Assiminea parasitologica ムシヤドリカワザンショウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Assiminea sp. A テシオカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Assiminea sp. B イヨカワザンショウ（ヤミカワザンショウ） | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Assiminea sp. C アッケシカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Assiminea sp. J ヒナタムシヤドリカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Assimineidae gen. A yoshidayukioi ヨシダカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Assimineidae gen. A & sp. オイランカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/64 (0.0%) | — |
| NT 準絶滅危惧 | Rugapedia sp. アシヒダツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Bithynia moltschanovi エゾマメタニシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/15 (0.0%) | 0/37 (0.0%) | — |
| NT 準絶滅危惧 | Falsicingula kurilensis ナタネツボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/2 (0.0%) | — |
| NT 準絶滅危惧 | Chevallieria sp. ジーコンボツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Fluviocingula elegantula カワグチツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/19 (0.0%) | — |
| NT 準絶滅危惧 | Iravadia quadrasi マンガルツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/19 (0.0%) | — |
| NT 準絶滅危惧 | Nozeba ziczac サザナミツボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/19 (0.0%) | — |
| NT 準絶滅危惧 | Pellamora reflecta ニセゴマツボ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/19 (0.0%) | — |
| NT 準絶滅危惧 | Blanfordia japonica イツマデガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/90 (1.1%) | — |
| NT 準絶滅危惧 | Blanfordia simplex ヒメオカマメタニシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/90 (1.1%) | — |
| NT 準絶滅危惧 | Cecina manchurica クビキレガイモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/90 (1.1%) | — |
| NT 準絶滅危惧 | Fukuia kurodai ニクイロシブキツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/90 (1.1%) | — |
| NT 準絶滅危惧 | Rissoina pura ヌノメチョウジガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/967 (0.0%) | — |
| NT 準絶滅危惧 | Voorwindia sp. タニシツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/123 (0.0%) | — |
| NT 準絶滅危惧 | Stenothyra basiangulata オキナワミズゴマツボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/17 (0.0%) | — |
| NT 準絶滅危惧 | Stenothyra edogawensis エドガワミズゴマツボ（ウミゴマツボ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/17 (0.0%) | — |
| NT 準絶滅危惧 | Pseudoliotia pulchella シラギク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/13 (0.0%) | — |
| NT 準絶滅危惧 | Vitrinella sp. ナギツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/13 (0.0%) | — |
| NT 準絶滅危惧 | Strombus gibbosus ネジマガキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/93 (0.0%) | — |
| NT 準絶滅危惧 | Strombus labiatus ヒダトリガイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/93 (0.0%) | — |
| NT 準絶滅危惧 | Strombus robustus フドロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/93 (0.0%) | — |
| NT 準絶滅危惧 | Strombus urceus urceus オハグロガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/12 (0.0%) | 0/93 (0.0%) | — |
| NT 準絶滅危惧 | Velutina pusio ハナヅトガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/168 (0.0%) | — |
| NT 準絶滅危惧 | Depressiscala aurita オダマキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Papyriscala clementia クレハガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Papyriscala lyra ハブタエセキモリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Papyriscala yokoyamai セキモリ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Hypermastus peronellicola カシパンヤドリニナ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Hypermastus tokunagai トクナガヤドリニナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Hemifusus tuba テングニシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/21 (0.0%) | — |
| NT 準絶滅危惧 | Nassarius corticatus カタムシロ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius horridus イガムシロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius stoliczkanus ヒメオリイレムシロ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius livescens ムシロガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius venustus キツネノムシロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius bellulus カニノテムシロ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius bimaculosus フタホシカニノテムシロ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius globosus コブムシロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius luridus マタヨフバイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Nassarius olivaceus クリイロムシロ（クリイロヨフバイ） | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/178 (0.0%) | 1/347 (0.3%) | — |
| NT 準絶滅危惧 | Babylonia japonica バイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/13 (7.7%) | 2/358 (0.6%) | — |
| NT 準絶滅危惧 | Vexillum gruneri ハイイロミノムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/125 (0.0%) | — |
| NT 準絶滅危惧 | Vexillum sanguisuga カノコミノムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/64 (0.0%) | 0/125 (0.0%) | — |
| NT 準絶滅危惧 | Chicoreus asianus オニサザエ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/21 (0.0%) | 7/964 (0.7%) | — |
| NT 準絶滅危惧 | Oliva mustelina マクラガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/141 (0.0%) | — |
| NT 準絶滅危惧 | Conus figulinus スジイモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 5/417 (1.2%) | 5/590 (0.8%) | — |
| NT 準絶滅危惧 | Conus loroisii コゲスジイモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 5/417 (1.2%) | 5/590 (0.8%) | — |
| NT 準絶滅危惧 | Etremopa gainesii チャイロフタナシシャジク | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Eucithara marginelloides コトツブ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/3 (0.0%) | 5/590 (0.8%) | — |
| NT 準絶滅危惧 | Pseudodaphnella leuckarti クリイロマンジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/328 (0.3%) | — |
| NT 準絶滅危惧 | Turris crispa クダボラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/20 (0.0%) | 0/497 (0.0%) | — |
| NT 準絶滅危惧 | Hastula rufopunctata シチクガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/342 (0.0%) | — |
| NT 準絶滅危惧 | Biwakovalvata biwaensis ビワコミズシタダミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Valvata hokkaidoensis ミズシタダミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/63 (0.0%) | 0/65 (0.0%) | — |
| NT 準絶滅危惧 | Japonactaeon sieboldii オオシイノミガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/20 (0.0%) | — |
| NT 準絶滅危惧 | Japonactaeon nipponensis ムラクモキジビキガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/20 (0.0%) | — |
| NT 準絶滅危惧 | Pupa sulcata カヤノミガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/20 (0.0%) | — |
| NT 準絶滅危惧 | Limulatys ooformis ホソタマゴガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/93 (1.1%) | — |
| NT 準絶滅危惧 | Acteocina koyasensis コヤスツララ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/23 (0.0%) | — |
| NT 準絶滅危惧 | Siphonacmea oblongata キタノカラマツガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Bacteridium vittatum イトカケゴウナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Evalea suoana スオウクチキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Syrnola hanzawai アンパルクチキレ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Syrnola aciculata ククリクチキレ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Pyrgulina shigeyasui シゲヤスイトカケギリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Leucotina digitalis チビマキギヌ（ササクレマキモノガイ） | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Leucotina sp. ニライカナイゴウナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Pyramidella ventricosa オオシイノミクチキレ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/71 (0.0%) | — |
| NT 準絶滅危惧 | Monotygma eximia ヒメゴウナ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Tiberia dunkeri ドウンケルクチキレ（エバラクチキレ） | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Turbonilla scrobiculata ウネイトカケギリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/71 (0.0%) | — |
| NT 準絶滅危惧 | Pyramidellidae gen. A. & sp. A ヌカルミクチキレ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/71 (0.0%) | 0/71 (0.0%) | — |
| NT 準絶滅危惧 | Turbonilla teganumana エドイトカケギリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/71 (0.0%) | — |
| NT 準絶滅危惧 | Turbonilla kuraenohamana クラエノハマイトカケギリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/71 (0.0%) | — |
| NT 準絶滅危惧 | Radix auricularia japonica モノアラガイ | — | — | — | — | — | No | — | — | — | 1 | 1 | 6 | 1/251 (0.4%) | 4/420 (1.0%) | — |
| NT 準絶滅危惧 | Choanomphalodes perstriatulus カドヒラマキガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Polypylis hemisphaerula ヒラマキガイモドキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/5 (0.0%) | 7/668 (1.0%) | — |
| NT 準絶滅危惧 | Polypylis usta リュウキュウヒラマキガイモドキ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 20 | 0/2 (0.0%) | 7/668 (1.0%) | — |
| NT 準絶滅危惧 | Carychium cymatoplax ナガケシガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/28 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Carychium pessimum ケシガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/28 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Cassidula crassiuscula カタシイノミミミガイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/9 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Cassidula mustelina ウラシマミミガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/9 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Cassidula plecotrematoides plecotrematoides ヒゲマキシイノミミミガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/9 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Cassidula vespertilionis コウモリミミガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/9 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Laemodonta exaratoides ウスコミミガイ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Laemodonta monilifera マキスジコミミガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Laemodonta sp. A シュジュコミミガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Laemodonta typica ヘソアキコミミガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Melampus phaeostylus コメツブハマシイノミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Melampus sulculosus キヌメハマシイノミ（トリコハマシイノミ） | LC | — | — | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/20 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Microtralia sp. コデマリナギサノシタタリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Pedipes jouani ヒヅメガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Pythia nana ヒメヒラシイノミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/11 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Pythia pachyodon クロヒラシイノミ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 1 | 0/11 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Pythia pantherina マダラヒラシイノミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/11 (0.0%) | 1/149 (0.7%) | — |
| NT 準絶滅危惧 | Platevindex sp. B ゴマセンベイアワモチ | — | — | — | — | — | No | — | — | — | 0 | 0 | 6 | 0/19 (0.0%) | 5/133 (3.8%) | — |
| NT 準絶滅危惧 | Granulilimax fuscicornis イボイボナメクジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/38 (2.6%) | — |
| NT 準絶滅危惧 | Oxyloma hirasei ナガオカモノアラガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/52 (0.0%) | 0/180 (0.0%) | — |
| NT 準絶滅危惧 | Pacificella rucuana リュウキュウノミガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Tornatellides tryoni トライオンノミガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/53 (0.0%) | — |
| NT 準絶滅危惧 | Pyramidula conica ナタネガイモドキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/27 (0.0%) | 0/27 (0.0%) | — |
| NT 準絶滅危惧 | Eostrobilops nipponica reikoae ナニワクチミゾガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/3 (0.0%) | — |
| NT 準絶滅危惧 | Gastrocopta armigerella armigerella スナガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/54 (0.0%) | — |
| NT 準絶滅危惧 | Gastrocopta armigerella daitojimana ダイトウジマスナガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/54 (0.0%) | — |
| NT 準絶滅危惧 | Gastrocopta boninensis ボニンスナガイ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/54 (0.0%) | — |
| NT 準絶滅危惧 | Truncatellina insulivaga ミジンサナギガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/37 (0.0%) | — |
| NT 準絶滅危惧 | Vertigo kushiroensis クシロキバサナギガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/115 (0.0%) | 0/151 (0.0%) | — |
| NT 準絶滅危惧 | Luchuena oshimana オオシマキセルモドキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Mirus andersonianus クリイロキセルモドキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/69 (0.0%) | — |
| NT 準絶滅危惧 | Mirus rugulosus ホソキセルモドキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/69 (0.0%) | — |
| NT 準絶滅危惧 | Euphaedusa aculus mesimana メシマコギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/6 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa aulacophora クロチビギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa decapitata シリオレトノサマギセル | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa dorcas オクガタギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa ducalis トノサマギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa hosayaka ホソヤカギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa iotaptyx シリボソギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa kawasakii ハチノコギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa kuninoae クニノギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa martensi オオギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa mikado ミカドギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa morisakii モリサキギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa nankaidoensis nankaidoensis コシボソギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa pilsbryana ピルスブリギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa pinguis pinguis キイツムガタギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa plicilabris コスジギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa rex オオトノサマギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa rhopalia ツメギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa schmackeri シマケルギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa sericina チュウゼンジギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa stenospira シロバリギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa sugimotonis misaki ミサキギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa sugimotonis sugimotonis スギモトギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa surugensis スルガギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa tanegashimae タネガシマギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Megalophaedusa tosaensis トサシリボソギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Reinia arborea ムコウジマコギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/13 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa addisoni plagioptyx ハスヒダギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa hickonis mikawa ミカワギセル | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa hooyoensis ホウヨギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa interlamellaris カタギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa jacobiella ヒメヤコビギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa koshikijimana コシキジマギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa nesiothauma ヒルグチギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa nugax コハラブトギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa okimodoki オキモドキギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa oshimae oshimae オオシマギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa tosana トサギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa tripleuroptyx クロシマギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/14 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa ujiguntoensis ウジグントウギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa una ナカダチギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Stereophaedusa vasta moriyai モリヤギセル | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Tauphaedusa stearnsii iriomotensis イリオモテコギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/5 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Tauphaedusa stearnsii stearnsii スタアンズギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/5 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx adulta サキシマノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx asperata アラハダノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx deminuta ヨワノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx hachijoensis ハチジョウノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx kusakakiensis クサカキノミギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx nakanoshimana ナカノシマノミギセル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx polita ツヤノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx ptychocyma ハラブトノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx stimpsoni sadoensis サドギセル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx tantilla チイサギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx thaumatopoma ニセノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Zaptyx yukitai ユキタノミギセル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/613 (0.2%) | — |
| NT 準絶滅危惧 | Sinoennea insularis ツヤダワラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/5 (0.0%) | — |
| NT 準絶滅危惧 | Videnoida cathcartae ツヤカサマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/28 (0.0%) | — |
| NT 準絶滅危惧 | Videnoida gouldiana タカカサマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/28 (0.0%) | — |
| NT 準絶滅危惧 | Videnoida horiomphala オオカサマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/28 (0.0%) | — |
| NT 準絶滅危惧 | Bekkochlamys serena スカシベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| NT 準絶滅危惧 | Bekkochlamys teramachii テラマチベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| NT 準絶滅危惧 | Ceratochlamys hiraseana コシダカヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Danjochlamys meshimaensis メシマベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Japanochlamys awaensis アワクリイロベッコウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/11 (0.0%) | — |
| NT 準絶滅危惧 | Liardetia boninensis ボニンキビ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/43 (0.0%) | — |
| NT 準絶滅危惧 | Otesiopsis kawaguchii カワグチレンズガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Otesiopsis yamamotoaizoi ダンジョレンズガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Parakaliella hizenensis ヒゼンキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Parakaliella pagoduloides ヒメハリマキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Parakaliella ruida スジキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Sitalina insignis カサネシタラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Sitalina japonica ウメムラシタラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Takemasaia gudei グゥドベッコウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Trochochlamys labilis persubtilis ヒラオオキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| NT 準絶滅危惧 | Trochochlamys lioconus オオタキキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| NT 準絶滅危惧 | Trochochlamys longissima ツシマナガキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| NT 準絶滅危惧 | Trochochlamys praealta タカキビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| NT 準絶滅危惧 | Trochochlamys subcrenulata subcrenulata ヒメカサキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| NT 準絶滅危惧 | Yamatochlamys circumdata ハチジョウヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Nipponarion carinatus オオコウラナメクジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Deroceras monticola ヤマコウラナメクジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/258 (0.4%) | 1/262 (0.4%) | — |
| NT 準絶滅危惧 | Aegista aemula hadaka ハダカケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/17 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista aemula shikokuensis シコクケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/17 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista caerulea ミズイロオオベソマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista carinata カドバリオトメマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista cavicollis クチマガリマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista caviconus ヤギヅノマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista collinsoni collinsoni タシナミオトメマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista collinsoni lischkeana リシケオトメマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista conella コウニケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista conomphala ヘソカドケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista elegantissima シュリケマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/17 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista esakii エサキケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista friedeliana humerosa コシキフリイデルマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista hatakedai hatakedai ハタケダマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/17 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista hilgendorfi hilgendorfi ヒルゲンドルフマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista itoi イトウケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista kiusiuensis oshimana オオシマケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista kobensis discus ヒラコウベマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista kobensis gotoensis ゴトウコウベマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista kobensis koshikijimana コシキコウベマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista latizona クロオビオトメマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista meiacoshimensis ナガシリマルホソマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista mikuriyensis コケラマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista omma オマオオベソマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista pallens シロマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista pressa ヒラケマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista proba goniosoma カドコオオベソマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista tokyoensis トウキョウコオオベソマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista trochula ツシマケマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista tumida cavata キイオオベソマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Aegista tumida tumida フチマルオオベソマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Ainohelix io アケボノマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Bradybaena circulus hiroshihorii ホリマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/24 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Bradybaena phaeogramma iheyaensis イヘヤタメトモマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/24 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Euhadra brandtii sapporo サッポロマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Euhadra decorata diminuta ナンブマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Euhadra dixoni okicola オキマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Euhadra grata gratoides ミチノクマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Euhadra latispira yagurai コウロマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Euhadra quaesita heguraensis ヘグラマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Euhadra tokarainsula tokarainsula クロマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Euhadra tokarainsula ujiensis ウジグントウマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/24 (4.2%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Moellendorffia diminuta コケハダシワクチマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/3 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Nipponochloritis borealis キタノビロウドマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Nipponochloritis bracteata bracteata ウロコビロウドマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Nipponochloritis fragilis ケハダビロウドマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Nipponochloritis kawanai カワナビロウドマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Nipponochloritis osumiensis オオスミビロウドマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Nipponochloritis pumila キヌビロウドマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma ammiralis ハンミガキマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma caliginosa caliginosa イッシキマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma cristata アナナシマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma danzyoensis ダンジョマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma fusca コシタカコベソマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma mercatoria iejimana イエジママイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma myomphala fukashimana フカシマコベソマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma okiensis オキシメクチマイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma omphalodes サンインコベソマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma pagodula ヒメタマゴマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma papilliformis ヤマタカマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma tadai タダマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma tanegashimae タネガシママイマイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Satsuma yaeyamensis クロイワヒダリマキマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/76 (0.0%) | 4/1495 (0.3%) | — |
| NT 準絶滅危惧 | Solemya pusilla キヌタレガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/56 (1.8%) | — |
| NT 準絶滅危惧 | Arcuatula japonica ヤマホトトギス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 41 | 1/3 (33.3%) | 19/1548 (1.2%) | — |
| NT 準絶滅危惧 | Modiolatus flavidus サザナミマクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Modiolus modulaides コケガラス | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 41 | 1/30 (3.3%) | 19/1548 (1.2%) | — |
| NT 準絶滅危惧 | Modiolus philippinarum ホソスジヒバリ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.63 Gbp 209.0x | 301,873 18.4 kbp | 1 | 1 | 41 | 1/30 (3.3%) | 19/1548 (1.2%) | 2017-04-05 |
| NT 準絶滅危惧 | Arenifodiens vagina イシワリマクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Magallana sikamea シカメガキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 30 | 3/10 (30.0%) | 14/330 (4.2%) | — |
| NT 準絶滅危惧 | Atrina japonica ズベタイラギ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Contig, Reference | 835 Mbp 260.0x | 3,391 911 kbp | 1 | 2 | 3 | 2/57 (3.5%) | 3/71 (4.2%) | 2023-02-20 |
| NT 準絶滅危惧 | Atrina lischkeana タイラギ（リシケタイラギ） | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/57 (3.5%) | 3/71 (4.2%) | — |
| NT 準絶滅危惧 | Pinna attenuata ハボウキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/13 (7.7%) | 3/71 (4.2%) | — |
| NT 準絶滅危惧 | Mimachlamys cloacata ヒナノヒオウギの1種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 1/13 (7.7%) | 7/157 (4.5%) | — |
| NT 準絶滅危惧 | Inversiunio jokohamensis ヨコハマシジラガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/6 (0.0%) | 8/869 (0.9%) | — |
| NT 準絶滅危惧 | Pronodularia japanensis マツカサガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/2 (0.0%) | 8/869 (0.9%) | — |
| NT 準絶滅危惧 | Pegophysema philippiana ショウゴインツキガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/2 (0.0%) | 10/189 (5.3%) | — |
| NT 準絶滅危惧 | Austriella corrugata シワツキガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/1 (0.0%) | 10/189 (5.3%) | — |
| NT 準絶滅危惧 | Fragum loochooanum オキナワヒシガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 25 | 3/12 (25.0%) | 13/212 (6.1%) | — |
| NT 準絶滅危惧 | Fragum unedo カワラガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 25 | 3/12 (25.0%) | 13/212 (6.1%) | — |
| NT 準絶滅危惧 | Chion semigranosus フジノハナガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Donax faba リュウキュウナミノコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/43 (4.7%) | 2/46 (4.3%) | — |
| NT 準絶滅危惧 | Donax kiusiuensis キュウシュウナミノコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/43 (4.7%) | 2/46 (4.3%) | — |
| NT 準絶滅危惧 | Latona cuneata ナミノコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/43 (4.7%) | 2/46 (4.3%) | — |
| NT 準絶滅危惧 | Gari elongata マスオガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/12 (8.3%) | 2/31 (6.5%) | — |
| NT 準絶滅危惧 | Gari maculosa アシガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/12 (8.3%) | 2/31 (6.5%) | — |
| NT 準絶滅危惧 | Gari minor ハザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/12 (8.3%) | 2/31 (6.5%) | — |
| NT 準絶滅危惧 | Gari squamosa ハスメヨシガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/12 (8.3%) | 2/31 (6.5%) | — |
| NT 準絶滅危惧 | Gari chinensis オチバ（コムラサキガイ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/12 (8.3%) | 2/31 (6.5%) | — |
| NT 準絶滅危惧 | Psammotaea togata ウラジロマスオ | — | — | — | — | — | No | — | — | — | 0 | 0 | 3 | 0/1 (0.0%) | 2/31 (6.5%) | — |
| NT 準絶滅危惧 | Semelangulus lacrimadugongi ザンノナミダ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Thyellisca trigonalis シロナノハナガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Solecurtus divaricatus キヌタアゲマキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 2/14 (14.3%) | — |
| NT 準絶滅危惧 | Solecurtus philippinarum ミナミキヌタアゲマキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 2/14 (14.3%) | — |
| NT 準絶滅危惧 | Clathrotellina carnicolor ヒラセザクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Jactellina compta ミクニシボリザクラ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Jactellina transcalpta ハスメザクラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Limecola contabulata サビシラトリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Praetextellina praetexta オオモモノハナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Rexithaerus sectior サギガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Jitlada juvenilis トガリユウシオガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Moerella hilaris モモノハナ（エドザクラ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Jitlada philippinarum リュウキュウザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Jitlada culter ユウシオガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Nitidotellina hokkaidoensis サクラガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Nitidotellina minuta ウズザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Tonganaella perna ダイミョウガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Pharaonella sieboldii ベニガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Pinguitellina robusta ウラキヒメザラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/4 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Serratina capsoides ヌノメイチョウシラトリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/4 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Tellinella crucigera ヒノデガイの1種 | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/4 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Tellinides striatus ヒラザクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/82 (3.7%) | — |
| NT 準絶滅危惧 | Trapezium liratum ウネナシトマヤガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/16 (0.0%) | — |
| NT 準絶滅危惧 | Trapezium sublaevigatum タガソデモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/16 (0.0%) | — |
| NT 準絶滅危惧 | Corbicula japonica ヤマトシジミ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.07 Gbp 59.0x | 3,723 617 kbp | 1 | 2 | 2 | 2/483 (0.4%) | 2/503 (0.4%) | 2024-04-29 |
| NT 準絶滅危惧 | Lutraria arcuata カモジガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 11 | 2/8 (25.0%) | 7/49 (14.3%) | — |
| NT 準絶滅危惧 | Lutraria maxima オオトリガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 11 | 2/8 (25.0%) | 7/49 (14.3%) | — |
| NT 準絶滅危惧 | Mactrotoma angulifera ワカミルガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/1 (0.0%) | 7/49 (14.3%) | — |
| NT 準絶滅危惧 | Meropesta nicobarica ユキガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 11 | 0/1 (0.0%) | 7/49 (14.3%) | — |
| NT 準絶滅危惧 | Atactodea striata イソハマグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/13 (0.0%) | — |
| NT 準絶滅危惧 | Coecella chinensis クチバガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/13 (0.0%) | — |
| NT 準絶滅危惧 | Anomalodiscus squamosus シオヤガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/1 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Bonartemis histrio オイノカガミ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 16 | 0/1 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Callista erycina フジイロハマグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/2 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Circe undatina シラオガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/8 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Clementia papyracea カミブスマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/1 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Gafrarium divaricatum ケマンガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/19 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Katelysia japonica スダレハマグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/5 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Pitar lineolatus ガンギハマグリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/9 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Pitar pellucidus オミナエシハマグリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 16 | 0/9 (0.0%) | 11/280 (3.9%) | — |
| NT 準絶滅危惧 | Eufistulana grandis コヅツガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/17 (0.0%) | — |
| NT 準絶滅危惧 | Anisodevonia ohshimai ヒノマルズキン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/39 (0.0%) | — |
| NT 準絶滅危惧 | Galeomma ambigua コハクマメアゲマキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/51 (2.0%) | — |
| NT 準絶滅危惧 | Galeomma rosea バライロマメアゲマキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/51 (2.0%) | — |
| NT 準絶滅危惧 | Galeomma sp. ニッポンマメアゲマキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/4 (0.0%) | 1/51 (2.0%) | — |
| NT 準絶滅危惧 | Lepirodes layardi ミナミウロコガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/51 (2.0%) | — |
| NT 準絶滅危惧 | Lepirodes takii ウロコガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/51 (2.0%) | — |
| NT 準絶滅危惧 | Litigiella pacifica ユンタクシジミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/39 (0.0%) | — |
| NT 準絶滅危惧 | Nipponomysella subtruncata スジホシムシモドキヤドリガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/39 (0.0%) | — |
| NT 準絶滅危惧 | Paraborniola matsumotoi マツモトウロコガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/66 (0.0%) | — |
| NT 準絶滅危惧 | Peregrinamor ohshimai マゴコロガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/7 (0.0%) | — |
| NT 準絶滅危惧 | Pseudopythina macrophthalmensis オサガニヤドリガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/66 (0.0%) | — |
| NT 準絶滅危惧 | Pseudopythina ochetostoma ナタマメケボリガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/66 (0.0%) | — |
| NT 準絶滅危惧 | Pythina deshayesiana セワケハチミツガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/66 (0.0%) | — |
| NT 準絶滅危惧 | Scintilla anomala ツマベニマメアゲマキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/15 (6.7%) | 1/51 (2.0%) | — |
| NT 準絶滅危惧 | Scintilla philippinensis ベッコウマメアゲマキ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Contig, Reference | 1.65 Gbp 55.0x | 6,132 491 kbp | 1 | 1 | 1 | 1/15 (6.7%) | 1/51 (2.0%) | 2024-12-04 |
| NT 準絶滅危惧 | Cryptomya elliptica クシケマスオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Mya japonica オオノガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/9 (11.1%) | 1/13 (7.7%) | — |
| NT 準絶滅危惧 | Laternula truncata ヒロクチソトオリガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/18 (0.0%) | 0/18 (0.0%) | — |
| NT 準絶滅危惧 | Solen roseomaculatus バラフマテ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/19 (5.3%) | — |
| NT 準絶滅危惧 | Solen sloanii リュウキュウマテ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/19 (5.3%) | — |
| DD 情報不足 | Semisulcospira dilatata フトマキカワニナ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| DD 情報不足 | Semisulcospira fluvialis ナンゴウカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| DD 情報不足 | Semisulcospira ourensis オオウラカワニナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| DD 情報不足 | Semisulcospira rugosa タテジワカワニナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/78 (1.3%) | 1/165 (0.6%) | — |
| DD 情報不足 | Akiyoshia akka アッカミジンツボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| DD 情報不足 | Akiyoshia cylindrica ホソミジンツボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| DD 情報不足 | Akiyoshia kawanensis カワネミジンツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| DD 情報不足 | Akiyoshia kishiiana サガノミジンツボ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| DD 情報不足 | Akiyoshia morimotoi コウチミジンツボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| DD 情報不足 | Akiyoshia scalaris クルイミジンツボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/967 (0.0%) | — |
| DD 情報不足 | Dolicrossea sp. ウズツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Ceratia sp. サンビャッケンツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/19 (0.0%) | — |
| DD 情報不足 | Tornidae gen. & sp. A トゲトゲツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/13 (0.0%) | — |
| DD 情報不足 | Tornidae gen. & sp. B チクチクツボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/13 (0.0%) | — |
| DD 情報不足 | Cornirostra sp. ヤマトカクメイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/1 (0.0%) | — |
| DD 情報不足 | Xenoskenea sp. シンジュノナミダ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Cingulina sp. ヒガタヨコイトカケギリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/71 (0.0%) | — |
| DD 情報不足 | Pyramidellidae gen. B & sp. カサガタガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/71 (0.0%) | 0/71 (0.0%) | — |
| DD 情報不足 | Galba sp. コシダカヒメモノアラガイ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 6 | 0/22 (0.0%) | 4/420 (1.0%) | — |
| DD 情報不足 | Radix auricularia auricularia イグチモノアラガイ | — | — | — | ✓ | — | No | — | — | — | 1 | 1 | 6 | 1/251 (0.4%) | 4/420 (1.0%) | — |
| DD 情報不足 | Radix auricularia swinhoei タイワンモノアラガイ | — | — | — | — | — | No | — | — | — | 1 | 1 | 6 | 1/251 (0.4%) | 4/420 (1.0%) | — |
| DD 情報不足 | Gyraulus chinensis ヒラマキミズマイマイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/205 (0.0%) | 7/668 (1.0%) | — |
| DD 情報不足 | Gyraulus gredleri クロヒラマキガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 20 | 0/205 (0.0%) | 7/668 (1.0%) | — |
| DD 情報不足 | Gyraulus illibatus ハブタエヒラマキガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/205 (0.0%) | 7/668 (1.0%) | — |
| DD 情報不足 | Gyraulus tokyoensis トウキョウヒラマキガイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 20 | 0/205 (0.0%) | 7/668 (1.0%) | — |
| DD 情報不足 | Laemodonta octanfracta イササコミミガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/10 (0.0%) | 1/149 (0.7%) | — |
| DD 情報不足 | Lamellidea hataiana ハタイノミガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Lamellidea monodonta ヒトハノミガイ | EX | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Lamellidea nakadai ナカダノミガイ | EX | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Vallonia patens エゾミジンマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/12 (0.0%) | 0/17 (0.0%) | — |
| DD 情報不足 | Gastrocopta ogasawarana オガサワラスナガイ | EX | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/54 (0.0%) | — |
| DD 情報不足 | Vertigo ovata stagnalis ミズギワキバサナギガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/115 (0.0%) | 0/151 (0.0%) | — |
| DD 情報不足 | Megalophaedusa aurantiaca moellendorffi エルベリギセル | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| DD 情報不足 | Megalophaedusa micropeas hokkaidoensis エゾヒメギセル | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/55 (0.0%) | 1/613 (0.2%) | — |
| DD 情報不足 | Stereophaedusa sp. (pSL) ナタマメギセル（偽南部大型） | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/39 (0.0%) | 1/613 (0.2%) | — |
| DD 情報不足 | Bekkochlamys danjoensis ダンジョベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys depressa コウベヒラベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys dulcis オオヒラベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys kagaensis ミドリベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys koshikijimana コシキオオヒラベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys kurodai ミヤコベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys kuroshimana クロシマベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys micrograpta ヒラベッコウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys nikkoensis ニッコウヒラベッコウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys perfragilis ベッコウマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys sakui ヤクシマベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys septentrionalis カントウベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Bekkochlamys shikokuensis シコクベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Japanochlamys cerasina クリイロベッコウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Japanochlamys decens カズマキベッコウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Japanochlamys hakonensis ハコネヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Japanochlamys shinanoensis エナクリイロベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Luchuconulus acuta カドヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Nipponochlamys hakusana ハクサンベッコウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Nipponochlamys hokkaidonis エゾヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Nipponochlamys izushichitojimana シチトウベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Nipponochlamys semisericata キヌツヤベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Ovachlamys kandai カンダベッコウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Parakaliella acutanguloides トガリキビ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Parakaliella affinis エゾキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Parakaliella bimaris マルキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Parakaliella hachijoensis ハチジョウキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Parakaliella higashiyamana アワキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Parakaliella okiana オキキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Trochochlamys crenulata basistriata ソコスジカサキビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys fraterna オオウエキビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys goniozona ヒメオオタキキビ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys humiliconus イセキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys kiiensis キイキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys monticola イヤヤマキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys okiensis オキノクニキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys okinoshimana オキノシマキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys sororcula トサキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys subcrenulata satsumana サツマヒメカサキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys tanzawaensis タンザワキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Trochochlamys xenica サドタカキビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Aegista hatakedai kawamurai カワムラマイマイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/17 (0.0%) | 4/1495 (0.3%) | — |
| DD 情報不足 | Aegista kobensis tsumiyamai ツミヤママイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| DD 情報不足 | Aegista kunimiensis ササミケマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/46 (0.0%) | 4/1495 (0.3%) | — |
| DD 情報不足 | Nipponochloritis echizenensis エチゼンビロウドマイマイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| DD 情報不足 | Nipponochloritis occidentalis サイコクビロウドマイマイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| DD 情報不足 | Nipponochloritis oscitans ビロウドマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 4/1495 (0.3%) | — |
| DD 情報不足 | Talonostrea talonata ネコノアシガキ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 30 | 5/82 (6.1%) | 14/330 (4.2%) | — |
| DD 情報不足 | Hiatula petalina アシベマスオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/6 (0.0%) | 2/31 (6.5%) | — |
| DD 情報不足 | Meropesta sp. ハブタエユキガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 11 | 0/1 (0.0%) | 7/49 (14.3%) | — |
| DD 情報不足 | Diplodonta sp. フタバシラガイの1種 | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/10 (0.0%) | — |
| DD 情報不足 | Arthritica reikoae ガタヅキ（コハギガイ） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/66 (0.0%) | — |
| DD 情報不足 | Melliteryx puncticulata ハチミツガイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/66 (0.0%) | — |
| DD 情報不足 | Mya uzenensis キタノオオノガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/9 (11.1%) | 1/13 (7.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Hemipoma hakodadiense 東北地方・佐渡島のハコダテヤマキサゴ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| LP 絶滅のおそれの ある地域個体群 | Cyclophorus turgidus turgidus 伊是名島のオキナワヤマタニシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/57 (0.0%) | 0/261 (0.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Littorina brevicula 沖縄島北部のタマキビ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 678 Mbp 37.0x | 15,448 78.9 kbp | 1 | 5 | 5 | 4/27 (14.8%) | 4/201 (2.0%) | 2024-10-24 |
| LP 絶滅のおそれの ある地域個体群 | Reticunassa festiva 沖縄島北部のアラムシロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/347 (0.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Cochlicopa lubrica 八丈島・佐渡島のヤマボタルガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/4 (0.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Columella edentula 東北地方以南のナガナタネガイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/35 (0.0%) | 0/37 (0.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Discus pauper 近畿地方以西のパツラマイマイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/22 (0.0%) | 0/39 (0.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Retinella hammonis 東北地方以南のコハクモドキ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/47 (0.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Sitalina latissima 九州以北のヒラシタラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| LP 絶滅のおそれの ある地域個体群 | Ezohelix gainesi gainesi 東北地方以南のエゾマイマイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1495 (0.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Bradybaena phaeogramma 伊豆諸島のタメトモマイマイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/24 (0.0%) | 4/1495 (0.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Magallana gigas 宮城県以北のナガガキ | — | ✓ | ✓ | ✓ | ✓ | Yes (8) | Chromosome, Reference | 564 Mbp 48.0x | 184 7.29 Mbp | 8 | 12 | 30 | 3/10 (30.0%) | 14/330 (4.2%) | 2019-08-08 |
| LP 絶滅のおそれの ある地域個体群 | Solen strictus 沖縄島北部のマテガイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/19 (5.3%) | 1/19 (5.3%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Compressalges nipponiae トキウモウダニ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Haemaphy salispentalagi クロウサギチマダニ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 48 | 1/131 (0.8%) | 18/815 (2.2%) | — |
| EN 絶滅危惧IB類 | Pyatakovestia boninensis オガサワラホソハマトビムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/3 (0.0%) | 4/326 (1.2%) | — |
| CR+EN 絶滅危惧I類 | Bdellocephala annandalei ビワオオウズムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/10 (0.0%) | 0/52 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Dendrocoelopsis kishidai キョウトウズムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/52 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Dugesia izuensis イズウズムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/267 (0.4%) | 6/349 (1.7%) | — |
| CR+EN 絶滅危惧I類 | Ectoplana limuli カブトガニウズムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/1 (0.0%) | 1/10 (10.0%) | — |
| CR+EN 絶滅危惧I類 | Phagocata papillifera カントウイドウズムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/40 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Cirrodrilus tsugarensis ツガルザリガニミミズ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Tachypleus tridentatus カブトガニ | EN | ✓ | ✓ | ✓ | ✓ | Yes (4) | Chromosome, Reference | 2.17 Gbp 50.0x | 7,577 1.64 Mbp | 4 | 5 | 9 | 2/4 (50.0%) | 4/9 (44.4%) | 2019-01-22 |
| CR+EN 絶滅危惧I類 | Cordiseta nakayamai ナカヤマタマツツガムシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Walchia pentalagi クロウサギワルヒツツガムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/17 (0.0%) | 2/131 (1.5%) | — |
| CR+EN 絶滅危惧I類 | Cybaeus itsukiensis イツキメナシナミハグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/117 (0.0%) | 0/133 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Salmincola stellatus イトウナガクビムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/10 (0.0%) | 0/72 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Gnorimosphaeroma boninense オガサワラコツブムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/24 (0.0%) | 0/370 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Hondoniscus kitakamiensis ホンドワラジムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR+EN 絶滅危惧I類 | Amamiku occulta カクレサワガニ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/505 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Geothelphusa levicervix トカシキオオサワガニ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Geothelphusa miyakoensis ミヤコサワガニ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Geothelphusa shokitai センカクサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Geothelphusa tenuimanus ヒメユリサワガニ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| CR+EN 絶滅危惧I類 | Paratya boninensis オガサワラヌマエビ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/19 (0.0%) | 3/523 (0.6%) | — |
| CR+EN 絶滅危惧I類 | Polyxenus shinoharai シノハラフサヤスデ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/44 (0.0%) | — |
| VU 絶滅危惧II類 | Phagocata albata ソウヤイドウズムシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/40 (0.0%) | — |
| VU 絶滅危惧II類 | Phagocata suginoi ホクリクホソウズムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/40 (0.0%) | — |
| VU 絶滅危惧II類 | Phagocata tenella ヒダカホソウズムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/40 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus aomorensis アオモリザリガニミミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus cirratus カムリザリガニミミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus ezoensis エゾザリガニミミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus homodontus ホソザリガニミミズ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus inukaii イヌカイザリガニミミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus iwakiensis イワキザリガニミミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus makinoi ヒメザリガニミミズ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus megalodentatus オオアゴザリガニミミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus nipponicus ニッポンザリガニミミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus sapporensis ザリガニミミズ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Cirrodrilus uchidai ウチダザリガニミミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/39 (0.0%) | — |
| VU 絶滅危惧II類 | Parabeloniscus shimojanai クメコシビロザトウムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/25 (0.0%) | — |
| VU 絶滅危惧II類 | Aculepeira matsudae マツダタカネオニグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/17 (0.0%) | 10/887 (1.1%) | — |
| VU 絶滅危惧II類 | Argyroneta aquatica ミズグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/410 (0.0%) | — |
| VU 絶滅危惧II類 | Heptathela kimurai sensu lato キムラグモ（広義） | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/29 (0.0%) | 1/50 (2.0%) | — |
| VU 絶滅危惧II類 | Lycosa ishikariana イソコモリグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/44 (0.0%) | 1/602 (0.2%) | — |
| VU 絶滅危惧II類 | Nesticus uenoi フジホラヒメグモ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/194 (0.0%) | — |
| VU 絶滅危惧II類 | Ryuthela nishihirai sensu lato オキナワキムラグモ（広義） | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 3.11 Gbp 39.0x | 2,521 12.9 Mbp | 1 | 1 | 1 | 1/18 (5.6%) | 1/50 (2.0%) | 2024-04-17 |
| VU 絶滅危惧II類 | Amamiku amamensis アマミミナミサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/505 (0.0%) | — |
| VU 絶滅危惧II類 | Antecaridina lauensis ドウクツヌマエビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/4 (0.0%) | 3/523 (0.6%) | — |
| VU 絶滅危惧II類 | Austruca lactea ハクセンシオマネキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Birgus latro ヤシガニ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.96 Gbp 51.0x | 914,468 5.29 kbp | 1 | 1 | 2 | 1/1 (100.0%) | 2/16 (12.5%) | 2021-05-18 |
| VU 絶滅危惧II類 | Cambaroides japonicus ニホンザリガニ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/5 (0.0%) | 2/647 (0.3%) | — |
| VU 絶滅危惧II類 | Candidiopotamon kumejimense クメジマミナミサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/505 (0.0%) | — |
| VU 絶滅危惧II類 | Candidiopotamon tokashikense トカシキミナミサワガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/505 (0.0%) | — |
| VU 絶滅危惧II類 | Chiromantes magnus オガサワラクロベンケイガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/270 (0.0%) | — |
| VU 絶滅危惧II類 | Chiromantes ryukyuanum リュウキュウアカテガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/270 (0.0%) | — |
| VU 絶滅危惧II類 | Coenobita perlatus サキシマオカヤドカリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/14 (7.1%) | 2/16 (12.5%) | — |
| VU 絶滅危惧II類 | Eriocheir ogasawaraensis オガサワラモクズガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 1/5 (20.0%) | 1/116 (0.9%) | — |
| VU 絶滅危惧II類 | Geothelphusa amagui ケラマサワガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| VU 絶滅危惧II類 | Geothelphusa aramotoi アラモトサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| VU 絶滅危惧II類 | Geothelphusa grandiovata オキナワオオサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| VU 絶滅危惧II類 | Geothelphusa iheya イヘヤオオサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| VU 絶滅危惧II類 | Geothelphusa kumejima クメジマオオサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| VU 絶滅危惧II類 | Macrobrachium miyakoense ウリガーテナガエビ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/278 (1.1%) | 4/1030 (0.4%) | — |
| VU 絶滅危惧II類 | Macrobrachium placidulum ネッタイテナガエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/278 (1.1%) | 4/1030 (0.4%) | — |
| VU 絶滅危惧II類 | Neocaridina ishigakiensis イシガキヌマエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/32 (3.1%) | 3/523 (0.6%) | — |
| VU 絶滅危惧II類 | Palaemon ogasawaraensis オガサワラコテナガエビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 9 | 1/106 (0.9%) | 4/1030 (0.4%) | — |
| VU 絶滅危惧II類 | Tubuca arcuata シオマネキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/20 (0.0%) | 0/132 (0.0%) | — |
| VU 絶滅危惧II類 | Spirobolus sp. ヤエヤママルヤスデ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/22 (0.0%) | — |
| NT 準絶滅危惧 | Stratospongilla clementis ヤワカイメン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/2 (0.0%) | 3/109 (2.8%) | — |
| NT 準絶滅危惧 | Drawida hattamimizu ハッタミミズ | LC | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/36 (0.0%) | 0/59 (0.0%) | — |
| NT 準絶滅危惧 | Psathyropus tenuipes ヒトハリザトウムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/266 (0.4%) | — |
| NT 準絶滅危惧 | Antrodiaetus roretzii カネコトタテグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/20 (0.0%) | 0/41 (0.0%) | — |
| NT 準絶滅危惧 | Calommata signata ワスレナグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/37 (0.0%) | — |
| NT 準絶滅危惧 | Conothele fragaria キノボリトタテグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/83 (0.0%) | 0/242 (0.0%) | — |
| NT 準絶滅危惧 | Latouchia typica キシノウエトタテグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/12 (0.0%) | 0/242 (0.0%) | — |
| NT 準絶滅危惧 | Xysticus daisetsuzanus ダイセツカニグモ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/151 (0.0%) | 0/691 (0.0%) | — |
| NT 準絶滅危惧 | Eurydice akiyamai ヒガタスナホリムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/102 (1.0%) | — |
| NT 準絶滅危惧 | Jesogammarus annandalei アナンデールヨコエビ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/20 (0.0%) | 0/46 (0.0%) | — |
| NT 準絶滅危惧 | Jesogammarus naritai ナリタヨコエビ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/20 (0.0%) | 0/46 (0.0%) | — |
| NT 準絶滅危惧 | Paracalliope dichotomus シオカワヨコエビ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/13 (0.0%) | — |
| NT 準絶滅危惧 | Atyoida pilipes ミナミオニヌマエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/3 (0.0%) | 3/523 (0.6%) | — |
| NT 準絶滅危惧 | Candidiopotamon okinawense オキナワミナミサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/505 (0.0%) | — |
| NT 準絶滅危惧 | Cardisoma rotundum ヘリトリオカガニ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/20 (0.0%) | — |
| NT 準絶滅危惧 | Caridina prashadi サキシマヌマエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/324 (0.3%) | 3/523 (0.6%) | — |
| NT 準絶滅危惧 | Caridina propinqua マングローブヌマエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/324 (0.3%) | 3/523 (0.6%) | — |
| NT 準絶滅危惧 | Caridina rubella アシナガヌマエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/324 (0.3%) | 3/523 (0.6%) | — |
| NT 準絶滅危惧 | Coenobita brevimanus オオナキオカヤドカリ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 4.73 Gbp 69.0x | 10,080 1.76 Mbp | 1 | 1 | 2 | 1/14 (7.1%) | 2/16 (12.5%) | 2024-11-04 |
| NT 準絶滅危惧 | Coenobita violascens コムラサキオカヤドカリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/14 (7.1%) | 2/16 (12.5%) | — |
| NT 準絶滅危惧 | Deiratonotus japonicus カワスナガニ | — | ✓ | ✓ | — | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/12 (0.0%) | — |
| NT 準絶滅危惧 | Epigrapsus notatus ヒメオカガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/20 (0.0%) | — |
| NT 準絶滅危惧 | Gaetice ungulatus オキナワヒライソガニ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/3 (0.0%) | 1/116 (0.9%) | — |
| NT 準絶滅危惧 | Gecarcoidea lalandii ムラサキオカガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/20 (0.0%) | — |
| NT 準絶滅危惧 | Geothelphusa exigua ミカゲサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| NT 準絶滅危惧 | Geothelphusa marginata fulva カッショクサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| NT 準絶滅危惧 | Geothelphusa marginata marginata ムラサキサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| NT 準絶滅危惧 | Geothelphusa minei ミネイサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| NT 準絶滅危惧 | Geothelphusa obtusipes リュウキュウサワガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| NT 準絶滅危惧 | Geothelphusa sakamotoana サカモトサワガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/505 (0.0%) | — |
| NT 準絶滅危惧 | Halocaridinides trigonophthalma チカヌマエビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/2 (0.0%) | 3/523 (0.6%) | — |
| NT 準絶滅危惧 | Ilyoplax deschampsi ハラグクレチゴガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/21 (0.0%) | 0/49 (0.0%) | — |
| NT 準絶滅危惧 | Macrobrachium gracilirostre ツブテナガエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/278 (1.1%) | 4/1030 (0.4%) | — |
| NT 準絶滅危惧 | Macrobrachium latidactylus ヒラアシテナガエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/278 (1.1%) | 4/1030 (0.4%) | — |
| NT 準絶滅危惧 | Macrobrachium shokitai ショキタテナガエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/278 (1.1%) | 4/1030 (0.4%) | — |
| NT 準絶滅危惧 | Metabetaeus minutus オハグロテッポウエビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/895 (0.0%) | — |
| NT 準絶滅危惧 | Moguai elongatum コウナガカワスナガニ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Neocaridina iriomotensis イリオモテヌマエビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/32 (3.1%) | 3/523 (0.6%) | — |
| NT 準絶滅危惧 | Neorhynchoplax yaeyamaensis ヤエヤマヤワラガニ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/25 (0.0%) | — |
| NT 準絶滅危惧 | Paramoguai pyriforme ヨウナシカワスナガニ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| NT 準絶滅危惧 | Ptychognathus takahashii ヨツハヒライソモドキ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/23 (0.0%) | 1/116 (0.9%) | — |
| NT 準絶滅危惧 | Ryukyum yaeyamense ヤエヤマヤマガニ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/505 (0.0%) | — |
| DD 情報不足 | Pectispongilla subspinosa ハケカイメン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Radiospongilla hozawai ホウザワカイメン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/5 (0.0%) | 3/109 (2.8%) | — |
| DD 情報不足 | Spongilla inarmata オオツカイメン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 7 | 1/11 (9.1%) | 3/109 (2.8%) | — |
| DD 情報不足 | Stratospongilla akanensis アカンコカイメン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/2 (0.0%) | 3/109 (2.8%) | — |
| DD 情報不足 | Craspedacusta iseana イセマミズクラゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/8 (12.5%) | 2/216 (0.9%) | — |
| DD 情報不足 | Ancyrobdella biwae イカリビル | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Ancyrobdella smaragdina ミドリビル | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Hemiclepsis japonica イボビル | — | — | — | — | — | No | — | — | — | 0 | 0 | 3 | 0/9 (0.0%) | 2/298 (0.7%) | — |
| DD 情報不足 | Oligobdella orientalis スクナビル | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 3 | 0/1 (0.0%) | 2/298 (0.7%) | — |
| DD 情報不足 | Oligobdella tagoi タゴビル | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 3 | 0/2 (0.0%) | 2/298 (0.7%) | — |
| DD 情報不足 | Ozobranchus jantseanus ヌマエラビル | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/4 (0.0%) | — |
| DD 情報不足 | Orobdella yamaneae ヤマネクガビル | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/26 (0.0%) | 0/26 (0.0%) | — |
| DD 情報不足 | Metagoniochernes tomiyamai テナガカニムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Acropsopilio boopis アワマメザトウムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| DD 情報不足 | Himalphalangium spinulatum ゴホントゲザトウムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/1 (0.0%) | 2/107 (1.9%) | — |
| DD 情報不足 | Hologagrella minatoi ミナトザトウムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Leiobunum rubrum アカスベザトウムシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/156 (0.6%) | 1/266 (0.4%) | — |
| DD 情報不足 | Leiobunum simplum シロウマスベザトウムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/156 (0.6%) | 1/266 (0.4%) | — |
| DD 情報不足 | Pygobunus okadai テングザトウムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Sabacon distinctus フセブラシザトウムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/30 (0.0%) | 0/36 (0.0%) | — |
| DD 情報不足 | Verpulus boninensis ムニンザトウムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Verpulus similis ムニンセグロザトウムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Liacarus latilamellatus アシュウタマゴダニ | — | — | — | ✓ | — | No | — | — | — | 0 | 2 | 3 | 2/40 (5.0%) | 3/160 (1.9%) | — |
| DD 情報不足 | Alopecosa hokkaidensis アシマダラコモリグモ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/42 (0.0%) | 1/602 (0.2%) | — |
| DD 情報不足 | Cladothela boninensis エダイボグモ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/294 (0.0%) | — |
| DD 情報不足 | Desis japonica ヤマトウシオグモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/63 (0.0%) | — |
| DD 情報不足 | Doosia japonica ドウシグモ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Filistata longibentris ハラナガカヤシマグモ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/97 (0.0%) | — |
| DD 情報不足 | Eubranchipus uchidai キタホウネンエビ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/37 (0.0%) | — |
| DD 情報不足 | Gnorimosphaeroma pulchellum ヒメコツブムシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/24 (0.0%) | 0/370 (0.0%) | — |
| DD 情報不足 | Elamenopsis ariakensis アリアケヤワラガニ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Gopkittisak angustum マメイソガニ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/1 (0.0%) | 1/116 (0.9%) | — |
| DD 情報不足 | Karstarma boholano ドウクツベンケイガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/270 (0.0%) | — |
| DD 情報不足 | Lithoselatium pulchrum カスリベンケイガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/270 (0.0%) | — |
| DD 情報不足 | Orcovita miruku ドウクツモクズガニ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| DD 情報不足 | Philyra iriomotensis イリオモテマメコブシガニ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/97 (0.0%) | — |
| DD 情報不足 | Philyra kanekoi カネココブシガニ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/97 (0.0%) | — |
| DD 情報不足 | Philyra taekoae アマミマメコブシガニ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/97 (0.0%) | — |
| DD 情報不足 | Tetrias sp. イリオモテヨコナガピンノ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/170 (0.0%) | — |
| DD 情報不足 | Varuna yui タイワンオオヒライソガニ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/3 (0.0%) | 1/116 (0.9%) | — |
| DD 情報不足 | Xiphonectes brockii ツノナシイボガザミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/3 (0.0%) | 4/519 (0.8%) | — |
| DD 情報不足 | Epanerchodus acuticlivus リュウオビヤスデ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/13 (0.0%) | 2/86 (2.3%) | — |
| DD 情報不足 | Epanerchodus aster ホシオビヤスデ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/13 (0.0%) | 2/86 (2.3%) | — |
| DD 情報不足 | Cristatella mucedo アユミコケムシ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 574 Mbp 170.0x | 986 4.12 Mbp | 1 | 1 | 1 | 1/1 (100.0%) | 1/1 (100.0%) | 2020-10-23 |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Elatostema lineolatum var. majus ホソバノキミズ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/212 (0.0%) | 4/1106 (0.4%) | — |
| EX 絶滅 | Ranunculus gmelinii カラクサキンポウゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| EX 絶滅 | Rubus hatsushimae ツクシアキツルイチゴ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 313 | 6/748 (0.8%) | 112/3824 (2.9%) | — |
| EX 絶滅 | Flemingia strobilifera ソロハギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/43 (2.3%) | 143/16133 (0.9%) | — |
| EX 絶滅 | Lespedeza hisauchii サガミメドハギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/65 (1.5%) | 143/16133 (0.9%) | — |
| EX 絶滅 | Euphrasia insignis subsp. insignis var. omiensis オオミコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| EX 絶滅 | Euphrasia insignis subsp. insignis var. pubigera マツラコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| EX 絶滅 | Euphrasia multifolia var. kirisimana クモイコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| EX 絶滅 | Cirsium toyoshimae トヨシマアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| EX 絶滅 | Aletris makiyataroi ヒメソクシンラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/26 (0.0%) | 1/35 (2.9%) | — |
| EX 絶滅 | Burmannia coelestris ミドリシャクジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/37 (0.0%) | 0/72 (0.0%) | — |
| EX 絶滅 | Thismia tuberculata キリシマタヌキノショクダイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/58 (0.0%) | 0/62 (0.0%) | — |
| EX 絶滅 | Eriocaulon cauliferum タカノホシクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EX 絶滅 | Cyperus diaphanus タチガヤツリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| EX 絶滅 | Cyperus procerus ホクトガヤツリ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| EX 絶滅 | Fimbristylis leptoclada var. takamineana チャイロテンツキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/68 (0.0%) | 34/3532 (1.0%) | — |
| EX 絶滅 | Fimbristylis pauciflora イシガキイトテンツキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/68 (0.0%) | 34/3532 (1.0%) | — |
| EX 絶滅 | Acanthephippium striatum タイワンアオイラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/4 (0.0%) | 22/11634 (0.2%) | — |
| EX 絶滅 | Neottia kiusiana ツクシサカネラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/41 (0.0%) | 22/11634 (0.2%) | — |
| EX 絶滅 | Odontochilus poilanei ツシマラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/8 (0.0%) | 22/11634 (0.2%) | — |
| EX 絶滅 | Renanthera labrosa ジンヤクラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/10 (0.0%) | 22/11634 (0.2%) | — |
| EX 絶滅 | Zeuxine boninensis ムニンキヌラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/16 (0.0%) | 22/11634 (0.2%) | — |
| EX 絶滅 | Lycopodium cunninghamioides コウヨウザンカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/189 (0.0%) | 1/328 (0.3%) | — |
| EX 絶滅 | Botrychium boreale タカネハナワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/67 (0.0%) | 0/143 (0.0%) | — |
| EX 絶滅 | Ophioglossum parvifolium イオウジマハナヤスリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/50 (0.0%) | 0/143 (0.0%) | — |
| EX 絶滅 | Hypolepis tenuifolia オオイワヒメワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/44 (0.0%) | 0/173 (0.0%) | — |
| EX 絶滅 | Tectaria dissecta ウスバシダモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/162 (0.0%) | 0/203 (0.0%) | — |
| EX 絶滅 | Pyrrosia angustissima ヒトツバノキシノブ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/74 (0.0%) | 0/1347 (0.0%) | — |
| EW 野生絶滅 | Magnolia pseudokobus コブシモドキ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 7 | 6/279 (2.2%) | 7/288 (2.4%) | — |
| EW 野生絶滅 | Malus hupehensis ツクシカイドウ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 1.17 Gbp 42.6x | 804 10.5 Mbp | 1 | 139 | 313 | 35/94 (37.2%) | 112/3824 (2.9%) | 2025-01-27 |
| EW 野生絶滅 | Kalanchoe spathulata リュウキュウベンケイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/102 (1.0%) | 6/1210 (0.5%) | — |
| EW 野生絶滅 | Astragalus sikokianus ナルトオウギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 328 | 3/1607 (0.2%) | 143/16133 (0.9%) | — |
| EW 野生絶滅 | Viola stoloniflora オリヅルスミレ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| EW 野生絶滅 | Lycoris sanguinea var. koreana ムジナノカミソリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/34 (0.0%) | 5/1496 (0.3%) | — |
| EW 野生絶滅 | Eriocaulon heleocharioides コシガヤホシクサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EW 野生絶滅 | Liparis uchiyamae キノエササラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| EW 野生絶滅 | Thelypteris aurita ハイミミガタシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/12 (0.0%) | 0/639 (0.0%) | — |
| EW 野生絶滅 | Arachniodes yasu-inouei var. angustipinnula コバヤシカナワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/100 (0.0%) | 3/1414 (0.2%) | — |
| EW 野生絶滅 | Dryopteris shibipedis シビイタチシダ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Chenopodium bryoniifolium ミドリアカザ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 36 | 381 | 13/118 (11.0%) | 28/1282 (2.2%) | — |
| CR 絶滅危惧IA類 | Chenopodium gracilispicum イワアカザ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 381 | 0/7 (0.0%) | 28/1282 (2.2%) | — |
| CR 絶滅危惧IA類 | Salix nummularia エゾマメヤナギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 27 | 61 | 11/461 (2.4%) | 28/881 (3.2%) | — |
| CR 絶滅危惧IA類 | Betula apoiensis アポイカンバ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 18 | 2/82 (2.4%) | 11/209 (5.3%) | — |
| CR 絶滅危惧IA類 | Celtis biondii var. insularis サキシマエノキ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 22 | 0/73 (0.0%) | 4/126 (3.2%) | — |
| CR 絶滅危惧IA類 | Ficus iidaiana オオヤマイチジク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 24 | 7/784 (0.9%) | 15/1207 (1.2%) | — |
| CR 絶滅危惧IA類 | Morus boninensis オガサワラグワ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 24 | 4/29 (13.8%) | 15/1207 (1.2%) | — |
| CR 絶滅危惧IA類 | Elatostema oshimense アマミサンショウソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/212 (0.0%) | 4/1106 (0.4%) | — |
| CR 絶滅危惧IA類 | Elatostema yakushimense ヒメトキホコリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/212 (0.0%) | 4/1106 (0.4%) | — |
| CR 絶滅危惧IA類 | Elatostema yonakuniense ヨナクニトキホコリ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/212 (0.0%) | 4/1106 (0.4%) | — |
| CR 絶滅危惧IA類 | Nanocnide pilosa トウカテンソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/8 (0.0%) | 4/1106 (0.4%) | — |
| CR 絶滅危惧IA類 | Procris boninensis セキモンウライソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/12 (0.0%) | 4/1106 (0.4%) | — |
| CR 絶滅危惧IA類 | Bistorta hayachinensis ナンブトラノオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 25 | 0/19 (0.0%) | 13/987 (1.3%) | — |
| CR 絶滅危惧IA類 | Persicaria japonica var. taitoinsularis ダイトウサクラタデ | — | — | — | — | — | No | — | — | — | 0 | 3 | 25 | 2/86 (2.3%) | 13/987 (1.3%) | — |
| CR 絶滅危惧IA類 | Minuartia arctica var. arctica エゾタカネツメクサ | — | — | — | — | — | No | — | — | — | 0 | 0 | 29 | 0/18 (0.0%) | 21/2097 (1.0%) | — |
| CR 絶滅危惧IA類 | Sagina saginoides チシマツメクサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/30 (0.0%) | 21/2097 (1.0%) | — |
| CR 絶滅危惧IA類 | Silene repens var. apoiensis アポイマンテマ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| CR 絶滅危惧IA類 | Silene tokachiensis トカチビランジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| CR 絶滅危惧IA類 | Silene uralensis タカネマンテマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| CR 絶滅危惧IA類 | Stellaria calycantha カンチヤチハコベ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/162 (0.0%) | 21/2097 (1.0%) | — |
| CR 絶滅危惧IA類 | Stellaria nipponica var. yezoensis オオイワツメクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/162 (0.0%) | 21/2097 (1.0%) | — |
| CR 絶滅危惧IA類 | Deeringia polysperma インドヒモカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/5 (0.0%) | 5/622 (0.8%) | — |
| CR 絶滅危惧IA類 | Polyalthia liukiuensis クロボウモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/32 (0.0%) | 2/2143 (0.1%) | — |
| CR 絶滅危惧IA類 | Cassytha glabella イトスナヅル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/11 (0.0%) | 8/1575 (0.5%) | — |
| CR 絶滅危惧IA類 | Illigera luzonensis テングノハナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/15 (0.0%) | 0/46 (0.0%) | — |
| CR 絶滅危惧IA類 | Aconitum iidemontanum イイデトリカブト | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Aconitum jaluense subsp. jaluense コウライブシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Aconitum japonicum subsp. maritimum var. iyariense イヤリトリカブト | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Aconitum kitadakense キタダケトリカブト | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Aconitum metajaponicum オンタケブシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Aconitum senanense subsp. senanense var. isidzukae オオサワトリカブト | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Callianthemum kirigishiense キリギシソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/15 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Callianthemum miyabeanum ヒダカソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/15 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Clematis obvallata var. obvallata コウヤハンショウヅル | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 18 | 0/232 (0.0%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Ranunculus pygmaeus クモマキンポウゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Ranunculus ternatus var. lutchuensis リュウキュウヒキノカサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Ranunculus yatsugatakensis ヤツガタケキンポウゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Thalictrum minus var. chionophyllum ミョウギカラマツ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Thalictrum ujiinsulare ウジカラマツ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| CR 絶滅危惧IA類 | Photinia serratifolia オオカナメモチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 313 | 0/45 (0.0%) | 112/3824 (2.9%) | — |
| CR 絶滅危惧IA類 | Prunus tamaclivorum ホシザクラ | — | — | — | ✓ | — | No | — | — | — | 0 | 55 | 313 | 18/385 (4.7%) | 112/3824 (2.9%) | — |
| CR 絶滅危惧IA類 | Rubus amamianus var. minor コバノアマミフユイチゴ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 11 | 313 | 6/748 (0.8%) | 112/3824 (2.9%) | — |
| CR 絶滅危惧IA類 | Rubus arcticus チシマイチゴ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 313 | 6/748 (0.8%) | 112/3824 (2.9%) | — |
| CR 絶滅危惧IA類 | Rubus nakaii チチジマイチゴ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 11 | 313 | 6/748 (0.8%) | 112/3824 (2.9%) | — |
| CR 絶滅危惧IA類 | Cocculus orbiculatus ホウザンツヅラフジ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/3 (0.0%) | 5/289 (1.7%) | — |
| CR 絶滅危惧IA類 | Pericampylus formosanus ホウライツヅラフジ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/3 (0.0%) | 5/289 (1.7%) | — |
| CR 絶滅危惧IA類 | Nuphar submersa シモツケコウホネ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/22 (4.5%) | 3/156 (1.9%) | — |
| CR 絶滅危惧IA類 | Piper postelsianum タイヨウフウトウカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/694 (0.3%) | 2/1101 (0.2%) | — |
| CR 絶滅危惧IA類 | Asarum caudigerum オナガサイシン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum dilatatum スエヒロアオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum gusk グスクカンアオイ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum hexalobum var. controversum シシキカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum kinoshitae ジュロウカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum minamitanianum オナガカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum mitoanum フクエジマカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum monodoriflorum モノドラカンアオイ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum muramatsui var. shimodanum シモダカンアオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum okinawense ヒナカンアオイ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum pellucidum トリガミネカンアオイ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum satsumense サツマアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum senkakuinsulare センカクカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Asarum tabatanum アサトカンアオイ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| CR 絶滅危惧IA類 | Eurya zigzag クニガミヒサカキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/73 (0.0%) | 1/227 (0.4%) | — |
| CR 絶滅危惧IA類 | Hypericum senkakuinsulare センカクオトギリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 8 | 4/361 (1.1%) | 4/432 (0.9%) | — |
| CR 絶滅危惧IA類 | Hypericum tosaense トサオトギリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 8 | 4/361 (1.1%) | 4/432 (0.9%) | — |
| CR 絶滅危惧IA類 | Aldrovanda vesiculosa ムジナモ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/93 (4.3%) | — |
| CR 絶滅危惧IA類 | Arabis ligulifolia ヘラハタザオ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 537 | 0/2 (0.0%) | 108/3414 (3.2%) | — |
| CR 絶滅危惧IA類 | Berteroella maximowiczii ハナナズナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 537 | 0/8 (0.0%) | 108/3414 (3.2%) | — |
| CR 絶滅危惧IA類 | Dontostemon dentatus ハナハタザオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 537 | 0/12 (0.0%) | 108/3414 (3.2%) | — |
| CR 絶滅危惧IA類 | Draba igarashii シリベシナズナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| CR 絶滅危惧IA類 | Draba nakaiana ソウウンナズナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| CR 絶滅危惧IA類 | Isatis tinctoria ハマタイセイ | — | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 294 Mbp 142.7x | 1,198 1.18 Mbp | 3 | 4 | 537 | 2/40 (5.0%) | 108/3414 (3.2%) | 2019-06-15 |
| CR 絶滅危惧IA類 | Corylopsis gotoana var. pubescens ヒゴミズキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/21 (0.0%) | 3/103 (2.9%) | — |
| CR 絶滅危惧IA類 | Sedum drymarioides ナナツガママンネングサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/255 (0.4%) | 6/1210 (0.5%) | — |
| CR 絶滅危惧IA類 | Mitella amamiana アマミチャルメルソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/11 (0.0%) | 3/831 (0.4%) | — |
| CR 絶滅危惧IA類 | Saxifraga bracteata キヨシソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/503 (0.2%) | 3/831 (0.4%) | — |
| CR 絶滅危惧IA類 | Saxifraga nishidae エゾノクモマグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/503 (0.2%) | 3/831 (0.4%) | — |
| CR 絶滅危惧IA類 | Saxifraga yuparensis ユウバリクモマグサ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/503 (0.2%) | 3/831 (0.4%) | — |
| CR 絶滅危惧IA類 | Deutzia hatusimae コミノヒメウツギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/74 (0.0%) | 1/262 (0.4%) | — |
| CR 絶滅危惧IA類 | Deutzia naseana var. amanoi オキナワヒメウツギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/74 (0.0%) | 1/262 (0.4%) | — |
| CR 絶滅危惧IA類 | Hydrangea involucrata var. tokarensis トカラタマアジサイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 1/136 (0.7%) | 1/262 (0.4%) | — |
| CR 絶滅危惧IA類 | Ribes horridum クロミノハリスグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/139 (0.7%) | 1/139 (0.7%) | — |
| CR 絶滅危惧IA類 | Pittosporum parvifolium コバトベラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/111 (0.9%) | 1/137 (0.7%) | — |
| CR 絶滅危惧IA類 | Astragalus japonicus エゾモメンヅル | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 328 | 3/1607 (0.2%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Crotalaria calycina ガクタヌキマメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/463 (0.2%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Crotalaria montana var. angustifolia ヤエヤマタヌキマメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/463 (0.2%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Crotalaria uncinella エダウチタヌキマメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/463 (0.2%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Entada tonkinensis モダマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/25 (0.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Euchresta formosana タイワンミヤマトベラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/4 (0.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Glycine max subsp. formosana ホソバツルマメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 36 | 43 | 328 | 4/50 (8.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Glycine tabacina ボウコツルマメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 43 | 328 | 4/50 (8.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Indigofera kirilowii チョウセンニワフジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/505 (0.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Intsia bijuga タシロマメ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/7 (0.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Pterocarpus vidalianus ヤエヤマシタン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 328 | 2/52 (3.8%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Sophora franchetiana ツクシムレスズメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 328 | 1/64 (1.6%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Tadehagi triquetrum タデハギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/6 (0.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Uraria picta ホソバフジボグサ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/9 (0.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Vigna vexillata var. vexillata サクヤアカササゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 328 | 9/95 (9.5%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Zornia cantoniensis スナジマメ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/54 (0.0%) | 143/16133 (0.9%) | — |
| CR 絶滅危惧IA類 | Cladopus fukienensis タシロカワゴケソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/14 (0.0%) | 0/404 (0.0%) | — |
| CR 絶滅危惧IA類 | Hydrobryum koribanum オオヨドカワゴロモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/41 (0.0%) | 0/404 (0.0%) | — |
| CR 絶滅危惧IA類 | Oxalis amamiana アマミカタバミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/433 (0.2%) | 1/457 (0.2%) | — |
| CR 絶滅危惧IA類 | Geranium shikokianum var. yoshiianum ヤクシマフウロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 33 | 8/185 (4.3%) | 28/531 (5.3%) | — |
| CR 絶滅危惧IA類 | Linum stelleroides マツバニンジン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 34 | 5/119 (4.2%) | 5/172 (2.9%) | — |
| CR 絶滅危惧IA類 | Chamaesyce liukiuensis リュウキュウタイゲキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 81 | / | 46/3652 (1.3%) | — |
| CR 絶滅危惧IA類 | Claoxylon centinarium セキモンノキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 81 | 0/10 (0.0%) | 46/3652 (1.3%) | — |
| CR 絶滅危惧IA類 | Croton sp. コバノクスドイゲ | — | ✓ | — | — | — | No | — | — | — | 0 | 3 | 81 | 2/679 (0.3%) | 46/3652 (1.3%) | — |
| CR 絶滅危惧IA類 | Discocleidion ulmifolium エノキフジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 81 | 0/1 (0.0%) | 46/3652 (1.3%) | — |
| CR 絶滅危惧IA類 | Euphorbia octoradiata ハギクソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 22 | 81 | 15/1294 (1.2%) | 46/3652 (1.3%) | — |
| CR 絶滅危惧IA類 | Euphorbia sp. アマミナツトウダイ | — | ✓ | — | — | — | No | — | — | — | 0 | 22 | 81 | 15/1294 (1.2%) | 46/3652 (1.3%) | — |
| CR 絶滅危惧IA類 | Euphorbia watanabei subsp. minamitanii ヒュウガタイゲキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 81 | 15/1294 (1.2%) | 46/3652 (1.3%) | — |
| CR 絶滅危惧IA類 | Margaritaria indica アカハダコバンノキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/8 (0.0%) | 3/876 (0.3%) | — |
| CR 絶滅危惧IA類 | Phyllanthus oligospermus subsp. donanensis ドナンコバンノキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/18 (0.0%) | 3/876 (0.3%) | — |
| CR 絶滅危惧IA類 | Citrus nippokoreana コウライタチバナ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 80 | 95 | 25/203 (12.3%) | 36/1482 (2.4%) | — |
| CR 絶滅危惧IA類 | Tetradium glabrifolium ホソバハマセンダン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 95 | 0/15 (0.0%) | 36/1482 (2.4%) | — |
| CR 絶滅危惧IA類 | Ryssopterys timoriensis ササキカズラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/671 (0.0%) | — |
| CR 絶滅危惧IA類 | Polygala longifolia リュウキュウヒメハギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/154 (0.0%) | 0/682 (0.0%) | — |
| CR 絶滅危惧IA類 | Polygala polifolia シンチクヒメハギ | — | — | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/154 (0.0%) | 0/682 (0.0%) | — |
| CR 絶滅危惧IA類 | Rhus javanica var. javanica タイワンフシノキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 3 | 0/7 (0.0%) | 1/119 (0.8%) | — |
| CR 絶滅危惧IA類 | Acer amamiense アマミカジカエデ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 20 | 4/171 (2.3%) | 11/1121 (1.0%) | — |
| CR 絶滅危惧IA類 | Ilex dimorphophylla アマミヒイラギモチ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 3/343 (0.9%) | 3/347 (0.9%) | — |
| CR 絶滅危惧IA類 | Ilex macrocarpa ヒロハタマミズキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 3/343 (0.9%) | 3/347 (0.9%) | — |
| CR 絶滅危惧IA類 | Euonymus oblongifolius ナガバヒゼンマユミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 1/92 (1.1%) | 2/735 (0.3%) | — |
| CR 絶滅危惧IA類 | Euonymus oligospermus アンドンマユミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 1/92 (1.1%) | 2/735 (0.3%) | — |
| CR 絶滅危惧IA類 | Buxus sinica var. sinica タイワンアサマツゲ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 3 | 1/105 (1.0%) | 2/141 (1.4%) | — |
| CR 絶滅危惧IA類 | Nothapodytes amamianus ワダツミノキ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/6 (16.7%) | 1/117 (0.9%) | — |
| CR 絶滅危惧IA類 | Rhamnus kanagusukui ヒメクロウメモドキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 18 | 0/120 (0.0%) | 6/930 (0.6%) | — |
| CR 絶滅危惧IA類 | Vitis romanetii クマガワブドウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 279 | 281 | 38/246 (15.4%) | 40/842 (4.8%) | — |
| CR 絶滅危惧IA類 | Grewia rhombifolia ヒシバウオトリギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 129 | 0/109 (0.0%) | 60/2539 (2.4%) | — |
| CR 絶滅危惧IA類 | Tilia mandshurica var. chugokuensis チュウゴクボダイジュ | — | — | — | — | — | No | — | — | — | 0 | 1 | 129 | 1/42 (2.4%) | 60/2539 (2.4%) | — |
| CR 絶滅危惧IA類 | Tilia mandshurica var. mandshurica マンシュウボダイジュ | — | — | — | ✓ | — | No | — | — | — | 0 | 1 | 129 | 1/42 (2.4%) | 60/2539 (2.4%) | — |
| CR 絶滅危惧IA類 | Triumfetta procumbens var. glaberrima ケナシハテルマカズラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 129 | 0/30 (0.0%) | 60/2539 (2.4%) | — |
| CR 絶滅危惧IA類 | Abelmoschus moschatus var. betulifolius センカクトロロアオイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 129 | 1/12 (8.3%) | 60/2539 (2.4%) | — |
| CR 絶滅危惧IA類 | Diplomorpha phymatoglossa オオシマガンピ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/4 (0.0%) | 6/559 (1.1%) | — |
| CR 絶滅危惧IA類 | Elaeagnus arakiana タンゴグミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 6 | 2/77 (2.6%) | 6/92 (6.5%) | — |
| CR 絶滅危惧IA類 | Elaeagnus epitricha クマヤマグミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 6 | 2/77 (2.6%) | 6/92 (6.5%) | — |
| CR 絶滅危惧IA類 | Viola amamiana アマミスミレ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| CR 絶滅危惧IA類 | Viola lactiflora シロコスミレ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| CR 絶滅危惧IA類 | Viola okinawensis シマジリスミレ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| CR 絶滅危惧IA類 | Viola sp. テリハオリヅルスミレ | — | — | — | — | — | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| CR 絶滅危惧IA類 | Viola tashiroi var. tairae イシガキスミレ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| CR 絶滅危惧IA類 | Trichosanthes homophylla var. ishigakiensis イシガキカラスウリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 154 | 2/107 (1.9%) | 59/971 (6.1%) | — |
| CR 絶滅危惧IA類 | Zehneria perpusilla var. deltifrons サツマスズメウリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 154 | 0/55 (0.0%) | 59/971 (6.1%) | — |
| CR 絶滅危惧IA類 | Rotala elatinomorpha ヒメキカシグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 21 | 0/20 (0.0%) | 9/405 (2.2%) | — |
| CR 絶滅危惧IA類 | Rotala hippuris ミズスギナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 21 | 0/20 (0.0%) | 9/405 (2.2%) | — |
| CR 絶滅危惧IA類 | Barringtonia asiatica ゴバンノアシ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/26 (0.0%) | 0/270 (0.0%) | — |
| CR 絶滅危惧IA類 | Melastoma tetramerum var. tetramerum ムニンノボタン | — | ✓ | — | — | — | No | — | — | — | 0 | 5 | 5 | 4/60 (6.7%) | 4/3318 (0.1%) | — |
| CR 絶滅危惧IA類 | Lumnitzera racemosa ヒルギモドキ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.32 Gbp 124.0x | 2,239 37.2 Mbp | 1 | 2 | 5 | 2/3 (66.7%) | 5/293 (1.7%) | 2022-07-05 |
| CR 絶滅危惧IA類 | Terminalia nitens テリハモモタマナ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 5 | 1/125 (0.8%) | 5/293 (1.7%) | — |
| CR 絶滅危惧IA類 | Epilobium fastigiatoramosum エダウチアカバナ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 6 | 1/112 (0.9%) | 4/472 (0.8%) | — |
| CR 絶滅危惧IA類 | Cornus kousa var. chinensis ヤエヤマヤマボウシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 1 | 6 | 6 | 4/79 (5.1%) | 4/105 (3.8%) | — |
| CR 絶滅危惧IA類 | Angelica cryptotaeniifolia var. cryptotaeniifolia ミヤマノダケ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| CR 絶滅危惧IA類 | Angelica minamitanii ヒュウガセンキュウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| CR 絶滅危惧IA類 | Angelica mukabakiensis オオウバタケニンジン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| CR 絶滅危惧IA類 | Angelica saxicola イシヅチボウフウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| CR 絶滅危惧IA類 | Angelica sinanomontana シナノノダケ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| CR 絶滅危惧IA類 | Heracleum lanatum subsp. akasimontanum ホソバハナウド | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 19 | 1/100 (1.0%) | 14/3098 (0.5%) | — |
| CR 絶滅危惧IA類 | Sanicula lamelligera var. wakayamensis キイウマノミツバ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 19 | 2/47 (4.3%) | 14/3098 (0.5%) | — |
| CR 絶滅危惧IA類 | Shortia rotundifolia var. amamiana アマミイワウチワ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/17 (0.0%) | — |
| CR 絶滅危惧IA類 | Moneses uniflora イチゲイチヤクソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 53 | 0/1 (0.0%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Menziesia goyozanense ゴヨウザンヨウラク | — | — | — | — | — | No | — | — | — | 0 | 0 | 53 | 0/1 (0.0%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Pieris koidzumiana リュウキュウアセビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 53 | 0/9 (0.0%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Rhododendron boninense ムニンツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Rhododendron dilatatum var. satsumense ハヤトミツバツツジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Rhododendron eriocarpum var. tawadae センカクツツジ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Rhododendron keiskei var. hypoglaucum ウラジロヒカゲツツジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Rhododendron latoucheae var. amamiense アマミセイシカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Vaccinium amamianum ヤドリコケモモ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 17 | 53 | 9/230 (3.9%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Vaccinium sieboldii ナガボナツハゼ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 17 | 53 | 9/230 (3.9%) | 34/3016 (1.1%) | — |
| CR 絶滅危惧IA類 | Myrsine okabeana マルバタイミンタチバナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/88 (0.0%) | 5/1484 (0.3%) | — |
| CR 絶滅危惧IA類 | Lysimachia liukiuensis ヒメミヤマコナスビ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/162 (0.0%) | 5/1484 (0.3%) | — |
| CR 絶滅危惧IA類 | Lysimachia ohsumiensis ヘツカコナスビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/162 (0.0%) | 5/1484 (0.3%) | — |
| CR 絶滅危惧IA類 | Primula kisoana var. kisoana カッコソウ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| CR 絶滅危惧IA類 | Primula macrocarpa ヒメコザクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| CR 絶滅危惧IA類 | Primula reinii var. myogiensis ミョウギイワザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| CR 絶滅危惧IA類 | Primula reinii var. rhodotricha チチブイワザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| CR 絶滅危惧IA類 | Limonium senkakuense センカクハマサジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/294 (0.3%) | 1/627 (0.2%) | — |
| CR 絶滅危惧IA類 | Limonium sinense タイワンハマサジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/294 (0.3%) | 1/627 (0.2%) | — |
| CR 絶滅危惧IA類 | Symplocos boninensis ムニンクロキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/209 (0.5%) | 1/210 (0.5%) | — |
| CR 絶滅危惧IA類 | Symplocos kawakamii ウチダシクロキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/209 (0.5%) | 1/210 (0.5%) | — |
| CR 絶滅危惧IA類 | Ligustrum tamakii トゲイボタ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 62 | 1/45 (2.2%) | 40/595 (6.7%) | — |
| CR 絶滅危惧IA類 | Gardneria liukiuensis リュウキュウホウライカズラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/254 (0.0%) | — |
| CR 絶滅危惧IA類 | Gardneria shimadai タイワンチトセカズラ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/254 (0.0%) | — |
| CR 絶滅危惧IA類 | Gentiana aquatica ヒナリンドウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/280 (1.1%) | 4/1131 (0.4%) | — |
| CR 絶滅危惧IA類 | Gentiana takushii ミヤココケリンドウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/280 (1.1%) | 4/1131 (0.4%) | — |
| CR 絶滅危惧IA類 | Excavatia hexandra ホソバヤロード | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Ochrosia iwasakiana シマソケイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/22 (0.0%) | 18/3270 (0.6%) | — |
| CR 絶滅危惧IA類 | Urceola micrantha ゴムカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/7 (0.0%) | 18/3270 (0.6%) | — |
| CR 絶滅危惧IA類 | Cynanchum boudieri アマミイケマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 24 | 1/148 (0.7%) | 18/3270 (0.6%) | — |
| CR 絶滅危惧IA類 | Dischidia formosana マメヅタカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/31 (0.0%) | 18/3270 (0.6%) | — |
| CR 絶滅危惧IA類 | Vincetoxicum inamoenum エゾノクサタチバナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| CR 絶滅危惧IA類 | Vincetoxicum yonakuniense ヨナグニカモメヅル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| CR 絶滅危惧IA類 | Galium triflorum ヤツガタケムグラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 39 | 4/268 (1.5%) | 28/6178 (0.5%) | — |
| CR 絶滅危惧IA類 | Hedyotis auricularia ヤエヤマハシカグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/8 (0.0%) | 28/6178 (0.5%) | — |
| CR 絶滅危惧IA類 | Knoxia sumatrensis シソノミグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 39 | 1/5 (20.0%) | 28/6178 (0.5%) | — |
| CR 絶滅危惧IA類 | Ophiorrhiza yamashitae アマミアワゴケ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 39 | 1/102 (1.0%) | 28/6178 (0.5%) | — |
| CR 絶滅危惧IA類 | Polemonium kiushianum ハナシノブ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/31 (0.0%) | 1/420 (0.2%) | — |
| CR 絶滅危惧IA類 | Aniseia martinicensis ナガバアサガオ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/4 (0.0%) | 11/1194 (0.9%) | — |
| CR 絶滅危惧IA類 | Cuscuta australis マメダオシ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Contig, Reference | 263 Mbp 97.6x | 218 3.63 Mbp | 1 | 4 | 17 | 4/192 (2.1%) | 11/1194 (0.9%) | 2018-06-22 |
| CR 絶滅危惧IA類 | Cuscuta europaea クシロネナシカズラ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Contig, Reference | 976 Mbp 41.0x | 475 17.9 Mbp | 1 | 4 | 17 | 4/192 (2.1%) | 11/1194 (0.9%) | 2022-11-27 |
| CR 絶滅危惧IA類 | Lepistemon binectariferum var. trichocarpum オオバケアサガオ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 17 | 0/0 | 11/1194 (0.9%) | — |
| CR 絶滅危惧IA類 | Cordia aspera subsp. kanehirae トゲミノイヌチシャ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/143 (0.7%) | 1/168 (0.6%) | — |
| CR 絶滅危惧IA類 | Cynoglossum lanceolatum var. formosanum タイワンルリソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/39 (0.0%) | 4/1307 (0.3%) | — |
| CR 絶滅危惧IA類 | Ehretia philippinensis リュウキュウチシャノキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/39 (2.6%) | 1/126 (0.8%) | — |
| CR 絶滅危惧IA類 | Eritrichium nipponicum var. albiflorum エゾルリムラサキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/18 (0.0%) | 4/1307 (0.3%) | — |
| CR 絶滅危惧IA類 | Hackelia deflexa イワムラサキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/15 (0.0%) | 4/1307 (0.3%) | — |
| CR 絶滅危惧IA類 | Mertensia pterocarpa var. yezoensis エゾルリソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/62 (0.0%) | 4/1307 (0.3%) | — |
| CR 絶滅危惧IA類 | Omphalodes prolifera ハイルリソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/10 (0.0%) | 4/1307 (0.3%) | — |
| CR 絶滅危惧IA類 | Callicarpa formosana ホウライムラサキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/74 (0.0%) | 44/4334 (1.0%) | — |
| CR 絶滅危惧IA類 | Callicarpa glabra シマムラサキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/74 (0.0%) | 44/4334 (1.0%) | — |
| CR 絶滅危惧IA類 | Callicarpa longissima タカクマムラサキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/74 (0.0%) | 44/4334 (1.0%) | — |
| CR 絶滅危惧IA類 | Vitex bicolor ヤエヤマハマゴウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/83 (0.0%) | 44/4334 (1.0%) | — |
| CR 絶滅危惧IA類 | Vitex quinata オオニンジンボク | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/83 (0.0%) | 44/4334 (1.0%) | — |
| CR 絶滅危惧IA類 | Amethystea caerulea ルリハッカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/1 (0.0%) | 44/4334 (1.0%) | — |
| CR 絶滅危惧IA類 | Coleus formosanus ケサヤバナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/66 (0.0%) | 44/4334 (1.0%) | — |
| CR 絶滅危惧IA類 | Teucrium veronicoides var. brachytrichum イヌニガクサ | — | — | — | — | — | No | — | — | — | 0 | 0 | 67 | 0/114 (0.0%) | 44/4334 (1.0%) | — |
| CR 絶滅危惧IA類 | Solanum miyakojimense イラブナスビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 210 | 283 | 60/1064 (5.6%) | 91/2447 (3.7%) | — |
| CR 絶滅危惧IA類 | Euphrasia multifolia var. inaensis イナコゴメグサ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| CR 絶滅危惧IA類 | Euphrasia pectinata var. obtusiserrata エゾノダッタンコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| CR 絶滅危惧IA類 | Pedicularis koidzumiana ベニシオガマ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/421 (0.0%) | 10/1409 (0.7%) | — |
| CR 絶滅危惧IA類 | Rehmannia japonica センリゴマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/11 (9.1%) | 10/1409 (0.7%) | — |
| CR 絶滅危惧IA類 | Veronicastrum liukiuense リュウキュウスズカケ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/16 (0.0%) | 35/1677 (2.1%) | — |
| CR 絶滅危惧IA類 | Veronicastrum villosulum スズカケソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/16 (0.0%) | 35/1677 (2.1%) | — |
| CR 絶滅危惧IA類 | Hemigraphis okamotoi ミヤコジマソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 9 | 0/22 (0.0%) | 4/1915 (0.2%) | — |
| CR 絶滅危惧IA類 | Aeschynanthus acuminatus ナガミカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/64 (0.0%) | 6/2399 (0.3%) | — |
| CR 絶滅危惧IA類 | Lysionotus apicidens タイワンシシンラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/35 (0.0%) | 6/2399 (0.3%) | — |
| CR 絶滅危惧IA類 | Titanotrichum oldhamii マツムラソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/1 (0.0%) | 6/2399 (0.3%) | — |
| CR 絶滅危惧IA類 | Orobanche boninsimae シマウツボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/87 (1.1%) | 10/1409 (0.7%) | — |
| CR 絶滅危惧IA類 | Abelia chinensis var. ionandra タイワンツクバネウツギ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/10 (0.0%) | 3/682 (0.4%) | — |
| CR 絶滅危惧IA類 | Abelia serrata var. tomentosa オニツクバネウツギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/5 (0.0%) | 3/682 (0.4%) | — |
| CR 絶滅危惧IA類 | Lonicera japonica var. miyagusukiana ヒメスイカズラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| CR 絶滅危惧IA類 | Lonicera kurobushiensis クロブシヒョウタンボク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| CR 絶滅危惧IA類 | Lonicera uzenensis ウゼンベニバナヒョウタンボク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| CR 絶滅危惧IA類 | Triosteum pinnatifidum ホザキツキヌキソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/9 (0.0%) | 3/682 (0.4%) | — |
| CR 絶滅危惧IA類 | Weigela florida オオベニウツギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/11 (0.0%) | 3/682 (0.4%) | — |
| CR 絶滅危惧IA類 | Patrinia triloba var. kozushimensis シマキンレイカ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/13 (0.0%) | 3/682 (0.4%) | — |
| CR 絶滅危惧IA類 | Adenophora hatsushimae ツクシイワシャジン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| CR 絶滅危惧IA類 | Adenophora palustris ヤチシャジン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| CR 絶滅危惧IA類 | Adenophora pereskiifolia var. yamadae ユウバリシャジン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| CR 絶滅危惧IA類 | Adenophora stricta トウシャジン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| CR 絶滅危惧IA類 | Lobelia chevalieri タチミゾカクシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/188 (0.5%) | 8/1490 (0.5%) | — |
| CR 絶滅危惧IA類 | Lobelia zeylanica マルバミゾカクシ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/188 (0.5%) | 8/1490 (0.5%) | — |
| CR 絶滅危惧IA類 | Ainsliaea oblonga var. latifolia オオナガバハグマ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/41 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Anaphalis sinica var. yakusimensis ヤクシマウスユキソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/74 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Antennaria dioica エゾノチチコグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/40 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Aster ujiinsularis オオイソノギク | — | — | — | — | — | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Aster yakushimensis ヤクシマノギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Cirsium aidzuense アイズヒメアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Cirsium akimotoi シライワアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Cirsium apoense アポイアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Cirsium japonicum var. australe タカサゴアザミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Cirsium katoanum ウゼンヒメアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Cirsium lucens var. bracteosum ヘイケモリアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Cirsium masami-saitoanum ヒュウガアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Cirsium nippoense ニッポウアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Conyza aegyptiaca キクバイズハハコ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 141 | 1/30 (3.3%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Crepidiastrum grandicollum コヘラナレン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Crepidiastrum lanceolatum var. daitoense ダイトウワダン | — | — | — | — | — | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Erigeron miyabeanus ミヤマノギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 141 | 3/186 (1.6%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Lagenophora lanata コケセンボンギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/16 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Ligularia angusta ヤマタバコ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/97 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Parasenecio hastatus subsp. orientalis var. nantaicus ニッコウコウモリ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/52 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Saussurea insularis シマトウヒレン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Saussurea mikurasimensis ミクラジマトウヒレン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Saussurea yakusimensis ヤクシマヒゴタイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Scorzonera rebunensis フタナミソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/41 (0.0%) | 84/16157 (0.5%) | — |
| CR 絶滅危惧IA類 | Alisma canaliculatum var. harimense ホソバヘラオモダカ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/11 (9.1%) | 1/142 (0.7%) | — |
| CR 絶滅危惧IA類 | Sagittaria natans カラフトグワイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/44 (0.0%) | 1/142 (0.7%) | — |
| CR 絶滅危惧IA類 | Potamogeton lucens var. teganumensis ガシャモク | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/127 (0.0%) | 0/171 (0.0%) | — |
| CR 絶滅危惧IA類 | Potamogeton obtusifolius イヌイトモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/127 (0.0%) | 0/171 (0.0%) | — |
| CR 絶滅危惧IA類 | Potamogeton praelongus ナガバエビモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/127 (0.0%) | 0/171 (0.0%) | — |
| CR 絶滅危惧IA類 | Ruppia occidentalis ヤハズカワツルモ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/22 (0.0%) | 3/39 (7.7%) | — |
| CR 絶滅危惧IA類 | Najas tenuicaulis ヒメイバラモ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/30 (0.0%) | 3/215 (1.4%) | — |
| CR 絶滅危惧IA類 | Sciaphila multiflora イシガキソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/18 (0.0%) | 0/29 (0.0%) | — |
| CR 絶滅危惧IA類 | Sciaphila sugimotoi オモトソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/18 (0.0%) | 0/29 (0.0%) | — |
| CR 絶滅危惧IA類 | Sciaphila yakushimensis ヤクシマソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/18 (0.0%) | 0/29 (0.0%) | — |
| CR 絶滅危惧IA類 | Anticlea sibirica リシリソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/6 (0.0%) | 1/204 (0.5%) | — |
| CR 絶滅危惧IA類 | Chionographis koidzumiana var. kurokamiana クロカミシライトソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/4 (25.0%) | 1/204 (0.5%) | — |
| CR 絶滅危惧IA類 | Disporum uniflorum キバナホウチャクソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/19 (0.0%) | 0/296 (0.0%) | — |
| CR 絶滅危惧IA類 | Lilium alexandrae ウケユリ | CR | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/151 (0.7%) | 2/752 (0.3%) | — |
| CR 絶滅危惧IA類 | Lilium callosum var. flaviflorum キバナスゲユリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/151 (0.7%) | 2/752 (0.3%) | — |
| CR 絶滅危惧IA類 | Lilium nobilissimum タモトユリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/151 (0.7%) | 2/752 (0.3%) | — |
| CR 絶滅危惧IA類 | Ophiopogon reversus ヨナグニノシラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/50 (0.0%) | 13/1467 (0.9%) | — |
| CR 絶滅危惧IA類 | Rohdea japonica var. latifolia サツマオモト | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/16 (0.0%) | 13/1467 (0.9%) | — |
| CR 絶滅危惧IA類 | Tofieldia coccinea var. kiusiana ナガエチャボゼキショウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/22 (0.0%) | — |
| CR 絶滅危惧IA類 | Tricyrtis formosana タイワンホトトギス | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/35 (0.0%) | 2/752 (0.3%) | — |
| CR 絶滅危惧IA類 | Tricyrtis hitra var. masamunei サツマホトトギス | — | — | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/35 (0.0%) | 2/752 (0.3%) | — |
| CR 絶滅危惧IA類 | Dioscorea luzonensis ルゾンヤマノイモ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 11 | 12 | 5/343 (1.5%) | 6/348 (1.7%) | — |
| CR 絶滅危惧IA類 | Dioscorea tabatae ユワンオニドコロ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 12 | 5/343 (1.5%) | 6/348 (1.7%) | — |
| CR 絶滅危惧IA類 | Dioscorea zentaroana アマミタチドコロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 12 | 5/343 (1.5%) | 6/348 (1.7%) | — |
| CR 絶滅危惧IA類 | Iris setosa var. nasuensis ナスヒオウギアヤメ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 8 | 5/302 (1.7%) | 6/1487 (0.4%) | — |
| CR 絶滅危惧IA類 | Oxygyne hyodoi ヒナノボンボリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/62 (0.0%) | — |
| CR 絶滅危惧IA類 | Oxygyne shinzatoi ホシザキシャクジョウ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/62 (0.0%) | — |
| CR 絶滅危惧IA類 | Oxygyne yamashitae ヤクノヒナホシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/62 (0.0%) | — |
| CR 絶滅危惧IA類 | Juncus decipiens f. filiformis オキナワイ | — | — | — | — | — | No | — | — | — | 0 | 6 | 10 | 2/164 (1.2%) | 4/282 (1.4%) | — |
| CR 絶滅危惧IA類 | Juncus potaninii エゾイトイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 10 | 2/164 (1.2%) | 4/282 (1.4%) | — |
| CR 絶滅危惧IA類 | Juncus yakeisidakensis ミヤマゼキショウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 10 | 2/164 (1.2%) | 4/282 (1.4%) | — |
| CR 絶滅危惧IA類 | Eriocaulon amanoanum アマノホシクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| CR 絶滅危惧IA類 | Eriocaulon perplexum エゾイヌノヒゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| CR 絶滅危惧IA類 | Eriocaulon seticuspe ヒュウガホシクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| CR 絶滅危惧IA類 | Eriocaulon truncatum スイシャホシクサ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| CR 絶滅危惧IA類 | Calamagrostis autumnalis キリシマノガリヤス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/100 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Digitaria mollicoma ビロードメヒシバ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 949 | 3/82 (3.7%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Elymus koryoensis タイシャクカモジ | — | — | — | — | — | No | — | — | — | 0 | 1 | 949 | 1/154 (0.6%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Elymus sibiricus エゾムギ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 6.90 Gbp 30.4x | 418 49.5 Mbp | 1 | 1 | 949 | 1/154 (0.6%) | 152/8634 (1.8%) | 2024-05-20 |
| CR 絶滅危惧IA類 | Elymus tsukushiensis var. tsukushiensis オニカモジ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 949 | 0/10 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Isachne lutchuensis ケナシハイチゴザサ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/18 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Isachne myosotis ヒメハイチゴザサ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/18 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Ischaemum indicum ヒメカモノハシ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/1 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Panicum paludosum オオヌカキビ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 41 | 949 | 4/182 (2.2%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Piptatherum kuoi イネガヤ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/34 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Poa glauca var. kitadakensis キタダケイチゴツナギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 949 | 6/372 (1.6%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Sacciolepis myosuroides ハラヌメリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/13 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Schizachne purpurascens subsp. callosa フォーリーガヤ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/2 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Sorghum nitidum コモロコシガヤ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 25 | 949 | 1/37 (2.7%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Sporobolus hancei ヒメネズミノオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 949 | 2/172 (1.2%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Thaumastochloa cochinchinensis ヒメウシノシッペイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/2 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Torreyochloa natans ホソバドジョウツナギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/1 (0.0%) | 152/8634 (1.8%) | — |
| CR 絶滅危惧IA類 | Nypa fruticans ニッパヤシ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 22 | 0/1 (0.0%) | 9/2316 (0.4%) | — |
| CR 絶滅危惧IA類 | Arisaema aprile オドリコテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema cucullatum ホロテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema heterocephalum subsp. majus オオアマミテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema heterocephalum subsp. okinawense オキナワテンナンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema inaense イナヒロハテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema ishizuchiense subsp. ishizuchiense イシヅチテンナンショウ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema kawashimae トクノシマテンナンショウ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema kuratae アマギテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema longipedunculatum var. yakumontanum ヤクシマヒロハテンナンショウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema minamitanii ヒュウガヒロハテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema nagiense ナギヒロハテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema ogatae オガタテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Arisaema seppikoense セッピコテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Pothos chinensis ユズノハカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/9 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Rhaphidophora kortharthii サキシマハブカズラ | — | — | — | — | — | No | — | — | — | 0 | 0 | 26 | 0/45 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Rhaphidophora liukiuensis ヒメハブカズラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/45 (0.0%) | 12/1764 (0.7%) | — |
| CR 絶滅危惧IA類 | Pandanus daitoensis ホソミアダン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/183 (0.5%) | 1/277 (0.4%) | — |
| CR 絶滅危惧IA類 | Carex aequialta トダスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex arisanensis アリサンタマツリスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex collifera リュウキュウヒエスゲ | CR | — | — | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex disperma ホソスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex filipes var. kuzakaiensis オクタマツリスゲ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex globularis トナカイスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex hoozanensis ホウザンスゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex kabanovii ヤリスゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex kagoshimensis セトウチスゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex laevissima ヒメミコシガヤ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex lehmannii センジョウスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex longistipes タイワンカンスゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex omiana var. yakushimana チャボカワズスゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex planiculmis var. urasawae チチブシラスゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex rhynchachaenium トックリスゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex rostrata var. borealis ヌマスゲ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex rotundata コヌマスゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex scita var. parvisquama ダイセンアシボソスゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Carex yasuii ムニンヒョウタンスゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Cyperus digitatus オオホウキガヤツリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Cyperus distans ホウキガヤツリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Cyperus niigatensis ニイガタガヤツリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Cyperus nutans var. subprolixus ヒメホウキガヤツリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Cyperus unioloides ムギガラガヤツリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Eleocharis atropurpurea クロミノハリイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 54 | 2/182 (1.1%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Eleocharis retroflexa subsp. chaetaria カヤツリマツバイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 54 | 2/182 (1.1%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Eleocharis tetraquetra var. tsurumachii カドハリイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 54 | 2/182 (1.1%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Eriophorum scheuchzeri var. tenuifolium エゾワタスゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/15 (0.0%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Fimbristylis fimbristyloides トモエバテンツキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/68 (0.0%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Fimbristylis kadzusana イッスンテンツキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/68 (0.0%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Fimbristylis nutans ウナヅキテンツキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/68 (0.0%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Isolepis crassiuscula ビャッコイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/66 (0.0%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Remirea maritima コウシュンスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Schoenus calostachyus イヘヤヒゲクサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/132 (0.0%) | 34/3532 (1.0%) | — |
| CR 絶滅危惧IA類 | Acanthephippium pictum エンレイショウキラン | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 28 | 0/4 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Acanthephippium sylhetense タイワンショウキラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/4 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Androcorys pusillus ミスズラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/51 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Anoectochilus formosanus キバナシュスラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/40 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Anoectochilus koshunensis コウシュンシュスラン | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/40 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Bulbophyllum affine クスクスラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/697 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Bulbophyllum macraei var. tanegashimense タネガシマシコウラン | — | — | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/697 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Calanthe alpina var. schlechteri キソエビネ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Calanthe amamiana アマミエビネ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Calanthe davidii タガネラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Calanthe densiflora タマザキエビネ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Calanthe hoshii ホシツルラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Calanthe mannii サクラジマエビネ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cheirostylis takeoi アリサンムヨウラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/19 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cremastra aphylla モイワラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/4 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Crepidium purpureum オキナワヒメラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/28 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cryptostylis arachnites オオスズムシラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/6 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cryptostylis taiwaniana タカオオオスズムシラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/6 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cymbidium dayanum var. leachianum ヘツカラン | — | — | — | ✓ | — | No | — | — | — | 0 | 1 | 28 | 1/111 (0.9%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cymbidium ensifolium スルガラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 28 | 1/111 (0.9%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cymbidium koran コラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 28 | 1/111 (0.9%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cymbidium sinense ホウサイラン | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 3.53 Gbp 121.0x | 8,496 1.11 Mbp | 1 | 1 | 28 | 1/111 (0.9%) | 22/11634 (0.2%) | 2022-01-12 |
| CR 絶滅危惧IA類 | Cypripedium guttatum チョウセンキバナアツモリソウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/66 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cypripedium macranthos var. macranthos ホテイアツモリ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/66 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Cypripedium shanxiense ドウトウアツモリソウ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/66 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Didymoplexiella siamensis コカゲラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Dienia ophrydis ホザキヒメラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/6 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Diploprora championii サガリラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/2 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Disperis neilgherrensis ジョウロウラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/32 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Epipogium japonicum アオキラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/2 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Erythrodes blumei ホソフデラン | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/8 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Erythrorchis altissima タカツルラン | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/2 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Eulophia taiwanensis タカサゴヤガラ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/76 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Gastrochilus ciliaris マツゲカヤラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/59 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Gastrodia albida ヤクシマヤツシロラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 1/25 (4.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Gastrodia elata var. pallens シロテンマ | — | — | — | ✓ | ✓ | No | — | — | — | 2 | 2 | 28 | 1/25 (4.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Gastrodia shimizuana ナンゴクヤツシロラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 1/25 (4.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Goodyera fumata ヤブミョウガラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/61 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Hancockia uniflora ヒメクリソラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/1 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Herminium monorchis クシロチドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/51 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Hetaeria oblongifolia オオカゲロウラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/10 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Heterozeuxine nervosa オオキヌラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| CR 絶滅危惧IA類 | Lecanorchis flavicans var. flavicans サキシマスケロクラン | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/15 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Lecanorchis japonica var. tubiformis ヤエヤマスケロクラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/15 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Lecanorchis nigricans var. yakusimensis ヤクムヨウラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/15 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Lecanorchis trachycaula アワムヨウラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/15 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Lecanorchis virella ミドリムヨウラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/15 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Liparis hostifolia シマクモキリソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Liparis nigra var. sootenzanensis キバナコクラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Liparis nikkoensis ヒメスズムシソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Liparis truncata クモイジガバチ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Liparis viridiflora コゴメキノエラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Macodes petola ナンバンカモメラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/4 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Malaxis boninensis シマホザキラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/38 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Myrmechis tsukusiana ツクシアリドオシラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/5 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Neottia furusei カイサカネラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/41 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Oberonia makinoi オオバヨウラクラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/64 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Odontochilus hatusimanus ハツシマラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/13 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Orchis graminifolia var. kurokamiana クロカミラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/28 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Orchis graminifolia var. suzukiana アワチドリ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/51 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Oreorchis itoana コハクラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/11 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Peristylus calcaratus ヒゲナガトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/28 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Peristylus lacertifer タコガタサギソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/28 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Phaius mishmensis ヒメカクラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/20 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Platanthera hondoensis オオバナオオヤマサギソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Platanthera mandarinorum subsp. hachijoensis var. masamunei ヤクシマトンボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Platanthera okuboi ハチジョウツレサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Platanthera sonoharae クニガミトンボソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Platanthera stenoglossa subsp. hottae ソハヤキトンボソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Pristiglottis rubricentra ヒメシラヒゲラン | — | — | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/3 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Thrixspermum fantasticum ハガクレナガミラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/52 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Thrixspermum saruwatarii ケイタオフウラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/52 (0.0%) | 22/11634 (0.2%) | — |
| CR 絶滅危惧IA類 | Lycopodium carolinianum イヌヤチスギラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/3 (0.0%) | 1/328 (0.3%) | — |
| CR 絶滅危惧IA類 | Lycopodium fargesii ヒモスギラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/189 (0.0%) | 1/328 (0.3%) | — |
| CR 絶滅危惧IA類 | Lycopodium laxum ボウカズラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/11 (0.0%) | 1/328 (0.3%) | — |
| CR 絶滅危惧IA類 | Lycopodium salvinioides ヒメヨウラクヒバ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/11 (0.0%) | 1/328 (0.3%) | — |
| CR 絶滅危惧IA類 | Lycopodium sieboldii var. christensenianum リュウキュウヒモラン | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/189 (0.0%) | 1/328 (0.3%) | — |
| CR 絶滅危惧IA類 | Lycopodium somae コスギトウゲシバ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/68 (0.0%) | 1/328 (0.3%) | — |
| CR 絶滅危惧IA類 | Equisetum variegatum チシマヒメドクサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/36 (0.0%) | 0/37 (0.0%) | — |
| CR 絶滅危惧IA類 | Botrychium lanceolatum ミヤマハナワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/67 (0.0%) | 0/143 (0.0%) | — |
| CR 絶滅危惧IA類 | Botrychium microphyllum イブリハナワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/67 (0.0%) | 0/143 (0.0%) | — |
| CR 絶滅危惧IA類 | Angiopteris fokiensis ヒノタニリュウビンタイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/40 (0.0%) | 0/155 (0.0%) | — |
| CR 絶滅危惧IA類 | Callistopteris apiifolia キクモバホラゴケ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/452 (0.0%) | — |
| CR 絶滅危惧IA類 | Cephalomanes atrovirens サキシマホラゴケ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/452 (0.0%) | — |
| CR 絶滅危惧IA類 | Didymoglossum bimarginatum マルバコケシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/35 (0.0%) | 0/452 (0.0%) | — |
| CR 絶滅危惧IA類 | Plagiogyria stenoptera シマヤマソテツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/19 (0.0%) | 0/19 (0.0%) | — |
| CR 絶滅危惧IA類 | Lindsaea ensifolia イヌイノモトソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/150 (0.0%) | 0/200 (0.0%) | — |
| CR 絶滅危惧IA類 | Lindsaea kawabatae シノブホングウシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/150 (0.0%) | 0/200 (0.0%) | — |
| CR 絶滅危惧IA類 | Odontosoria minutula コビトホラシノブ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/24 (0.0%) | 0/200 (0.0%) | — |
| CR 絶滅危惧IA類 | Odontosoria yaeyamensis ヤエヤマホラシノブ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/24 (0.0%) | 0/200 (0.0%) | — |
| CR 絶滅危惧IA類 | Antrophyum formosanum シマタキミシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/38 (0.0%) | 3/1173 (0.3%) | — |
| CR 絶滅危惧IA類 | Coniogramme gracilis ホソバイワガネソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/27 (0.0%) | 3/1173 (0.3%) | — |
| CR 絶滅危惧IA類 | Haplopteris forrestiana オオバシシラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/46 (0.0%) | 3/1173 (0.3%) | — |
| CR 絶滅危惧IA類 | Haplopteris mediosora イトシシラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/46 (0.0%) | 3/1173 (0.3%) | — |
| CR 絶滅危惧IA類 | Pteris formosana タイワンアマクサシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/254 (0.0%) | 3/1173 (0.3%) | — |
| CR 絶滅危惧IA類 | Pteris grevilleana アシガタシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/254 (0.0%) | 3/1173 (0.3%) | — |
| CR 絶滅危惧IA類 | Pteris kawabatae カワバタハチジョウシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/254 (0.0%) | 3/1173 (0.3%) | — |
| CR 絶滅危惧IA類 | Microlepia obtusiloba var. angustata ホソバコウシュンシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/44 (0.0%) | 0/173 (0.0%) | — |
| CR 絶滅危惧IA類 | Acystopteris tenuisecta ホウライウスヒメワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/35 (0.0%) | — |
| CR 絶滅危惧IA類 | Asplenium castaneoviride ヤマドリトラノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/454 (0.0%) | 0/502 (0.0%) | — |
| CR 絶滅危惧IA類 | Asplenium ensiforme ホコガタシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/454 (0.0%) | 0/502 (0.0%) | — |
| CR 絶滅危惧IA類 | Asplenium griffithianum フササジラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/454 (0.0%) | 0/502 (0.0%) | — |
| CR 絶滅危惧IA類 | Hymenasplenium cardiophyllum ヒメタニワタリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/46 (0.0%) | 0/502 (0.0%) | — |
| CR 絶滅危惧IA類 | Hymenasplenium subnormale ウスイロホウビシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/46 (0.0%) | 0/502 (0.0%) | — |
| CR 絶滅危惧IA類 | Woodsia subcordata キタダケデンダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/26 (0.0%) | 0/42 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium arisanense タイワンアリサンイヌワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium kenzo-satakei シビイヌワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium masamunei ヤクイヌワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium neglectum subsp. australe シイバサトメシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium otophorum var. okanum ヤマグチタニイヌワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium silvicola タカサゴイヌワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium spinescens トゲヤマイヌワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium tozanense シマイヌワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Athyrium yakusimense ヤクシマタニイヌワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Deparia formosana ジャコウシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Deparia minamitanii ヒュウガシケシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Diplazium kawakamii アオイガワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/240 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Diplazium megaphyllum ムシャシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/240 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Diplazium pin-faense フクレギシダ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/240 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Diplazium subtripinnatum ムニンミドリシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/240 (0.0%) | 0/447 (0.0%) | — |
| CR 絶滅危惧IA類 | Thelypteris erubescens タイヨウシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/639 (0.0%) | — |
| CR 絶滅危惧IA類 | Thelypteris gracilescens シマヤワラシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/639 (0.0%) | — |
| CR 絶滅危惧IA類 | Hypodematium fordii リュウキュウキンモウワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/27 (0.0%) | 0/30 (0.0%) | — |
| CR 絶滅危惧IA類 | Arachniodes cantilenae イツキカナワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/100 (0.0%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Arachniodes chinensis ツルダカナワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/100 (0.0%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Arachniodes hiugana ヒュウガカナワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/100 (0.0%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Arachniodes oohorae アタシカカナワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/100 (0.0%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Arachniodes simulans ヒゴカナワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/100 (0.0%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Cyrtomium macrophyllum var. microindusium クマヤブソテツ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/23 (0.0%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris anadroma (in schedule) ムカシベニシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris anthracinisquama クマイワヘゴ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris ebinoensis エビノオオクジャク | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris gymnosora var. angustata ホソバヌカイタチシダ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris hangchowensis キリシマイワヘゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris labordei var. purpurascens ムラサキベニシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris lunanensis オオミネイワヘゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris tsugiwoi マルバヌカイタチシダモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris tsutsuiana ツツイイワヘゴ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Dryopteris wallichiana オオヤグルマシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Elaphoglossum callifolium オキナワアツイタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/257 (0.0%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Polystichum fibrillosopaleaceum var. marginale スルガイノデ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Polystichum grandifrons キュウシュウイノデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Polystichum lachenense タカネシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Polystichum obae アマミデンダ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Polystichum piceopaleaceum サクラジマイノデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Polystichum shimurae シムライノデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| CR 絶滅危惧IA類 | Lomariopsis spectabilis ツルキジノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/65 (0.0%) | 0/71 (0.0%) | — |
| CR 絶滅危惧IA類 | Arthropteris palisotii ワラビツナギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/14 (0.0%) | 0/203 (0.0%) | — |
| CR 絶滅危惧IA類 | Tectaria fauriei コモチナナバケシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/162 (0.0%) | 0/203 (0.0%) | — |
| CR 絶滅危惧IA類 | Tectaria kusukusensis ナガバウスバシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/162 (0.0%) | 0/203 (0.0%) | — |
| CR 絶滅危惧IA類 | Aglaomorpha coronans カザリシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/9 (0.0%) | 0/1347 (0.0%) | — |
| CR 絶滅危惧IA類 | Drynaria roosii ハカマウラボシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/26 (0.0%) | 0/1347 (0.0%) | — |
| CR 絶滅危惧IA類 | Goniophlebium amamianum アマミアオネカズラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/1347 (0.0%) | — |
| CR 絶滅危惧IA類 | Lemmaphyllum pyriforme オニマメヅタ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/1347 (0.0%) | — |
| CR 絶滅危惧IA類 | Lepisorus oligolepidus ウロコノキシノブ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/85 (0.0%) | 0/1347 (0.0%) | — |
| CR 絶滅危惧IA類 | Leptochilus decurrens オキノクリハラン | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/101 (0.0%) | 0/1347 (0.0%) | — |
| CR 絶滅危惧IA類 | Oreogrammitis nipponica ヒロハヒメウラボシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/76 (0.0%) | 0/1347 (0.0%) | — |
| CR 絶滅危惧IA類 | Pyrrosia adnascens ヒトツバマメヅタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/74 (0.0%) | 0/1347 (0.0%) | — |
| CR 絶滅危惧IA類 | Pyrrosia linearifolia var. heterolepis タイワンビロードシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/74 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Salix nakamurana subsp. yezoalpina エゾノタカネヤナギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 27 | 61 | 11/461 (2.4%) | 28/881 (3.2%) | — |
| EN 絶滅危惧IB類 | Betula chichibuensis チチブミネバリ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 18 | 2/82 (2.4%) | 11/209 (5.3%) | — |
| EN 絶滅危惧IB類 | Betula ovalifolia ヤチカンバ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 18 | 2/82 (2.4%) | 11/209 (5.3%) | — |
| EN 絶滅危惧IB類 | Elatostema platyphyllum ランダイミズ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/212 (0.0%) | 4/1106 (0.4%) | — |
| EN 絶滅危惧IB類 | Lecanthus peduncularis チョクザキミズ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/2 (0.0%) | 4/1106 (0.4%) | — |
| EN 絶滅危惧IB類 | Pellionia brevifolia アラゲサンショウソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/13 (0.0%) | 4/1106 (0.4%) | — |
| EN 絶滅危惧IB類 | Santalum boninense ムニンビャクダン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 1/21 (4.8%) | 1/46 (2.2%) | — |
| EN 絶滅危惧IB類 | Persicaria attenuata subsp. pulchra アラゲタデ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 25 | 2/86 (2.3%) | 13/987 (1.3%) | — |
| EN 絶滅危惧IB類 | Rumex nepalensis var. andreanus キブネダイオウ | — | — | — | ✓ | — | No | — | — | — | 0 | 2 | 25 | 2/124 (1.6%) | 13/987 (1.3%) | — |
| EN 絶滅危惧IB類 | Cerastium furcatum var. ibukiense コバノミミナグサ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/118 (0.0%) | 21/2097 (1.0%) | — |
| EN 絶滅危惧IB類 | Minuartia biflora ハイツメクサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/18 (0.0%) | 21/2097 (1.0%) | — |
| EN 絶滅危惧IB類 | Silene hidaka-alpina カムイビランジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| EN 絶滅危惧IB類 | Silene repens var. latifolia チシママンテマ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| EN 絶滅危惧IB類 | Silene repens var. repens カラフトマンテマ | — | — | — | ✓ | — | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| EN 絶滅危惧IB類 | Stellaria diversiflora var. yakumontana ヤクシマサワハコベ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/1 (0.0%) | 21/2097 (1.0%) | — |
| EN 絶滅危惧IB類 | Stellaria humifusa エゾハコベ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/162 (0.0%) | 21/2097 (1.0%) | — |
| EN 絶滅危惧IB類 | Stellaria pterosperma エゾイワツメクサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/162 (0.0%) | 21/2097 (1.0%) | — |
| EN 絶滅危惧IB類 | Machilus pseudokobu テリハコブガシ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/90 (0.0%) | 8/1575 (0.5%) | — |
| EN 絶滅危惧IB類 | Neolitsea sericea var. argentea ダイトウシロダモ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/78 (0.0%) | 8/1575 (0.5%) | — |
| EN 絶滅危惧IB類 | Aconitum ciliare ハナカズラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Aconitum misaoanum シレトコトリカブト | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Aconitum yamazakii ダイセツトリカブト | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Anemone sikokiana シコクイチゲ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 18 | 0/136 (0.0%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Clematis obvallata var. shikokiana シコクハンショウヅル | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/232 (0.0%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Dichocarpum numajirianum コウヤシロカネソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/28 (0.0%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Pulsatilla nipponica ツクモグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/136 (0.0%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Ranunculus altaicus subsp. shinanoalpinus タカネキンポウゲ | — | — | — | — | — | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Ranunculus kitadakeanus キタダケキンポウゲ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Ranunculus nipponicus var. major オオイチョウバイカモ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Ranunculus trichophyllus var. kazusensis ヒメバイカモ | — | — | — | — | — | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Ranunculus yezoensis チトセバイカモ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Thalictrum aquilegiifolium var. sibiricum マンセンカラマツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Thalictrum minus var. yamamotoi イシヅチカラマツ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Thalictrum toyamae ヒレフリカラマツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Thalictrum uchiyamae ムラサキカラマツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| EN 絶滅危惧IB類 | Crataegus chlorosarca クロミサンザシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 313 | 2/245 (0.8%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Fragaria nipponica var. yakusimensis ヤクシマシロバナヘビイチゴ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 1 | 21 | 313 | 8/36 (22.2%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Malus spontanea ノカイドウ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 139 | 313 | 35/94 (37.2%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Potentilla matsumurae var. yuparensis ユウバリキンバイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 313 | 2/382 (0.5%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Prunus hisauchiana ヤブザクラ | — | — | — | ✓ | — | No | — | — | — | 0 | 55 | 313 | 18/385 (4.7%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Prunus incisa var. bukosanensis ブコウマメザクラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 55 | 313 | 18/385 (4.7%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Prunus sargentii var. akimotoi (in schedule) キリタチヤマザクラ | — | — | — | — | — | No | — | — | — | 0 | 55 | 313 | 18/385 (4.7%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Pyrus calleryana マメナシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 313 | 5/72 (6.9%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Pyrus ussuriensis var. ussuriensis ミチノクナシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 12 | 313 | 5/72 (6.9%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Rhodotypos scandens シロヤマブキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 313 | 0/1 (0.0%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Rubus chingii ゴショイチゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 313 | 6/748 (0.8%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Rubus swinhoei タイワンウラジロイチゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 313 | 6/748 (0.8%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Sanguisorba hakusanensis var. japonensis エゾノトウウチソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 313 | 0/24 (0.0%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Sanguisorba obtusa ナンブトウウチソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 313 | 0/24 (0.0%) | 112/3824 (2.9%) | — |
| EN 絶滅危惧IB類 | Peperomia okinawensis オキナワスナゴショウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/383 (0.0%) | 2/1101 (0.2%) | — |
| EN 絶滅危惧IB類 | Asarum celsum ミヤビカンアオイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum curvistigma カギガタアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum hatsushimae ハツシマカンアオイ | EN | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum kooyanum var. kooyanum コウヤカンアオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum kumageanum var. satakeanum ムラクモアオイ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum lutchuense オオバカンアオイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum majale コトウカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum misandrum アソサイシン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum nazeanum ナゼカンアオイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum sakawanum var. stellatum ホシザキカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum subglobosum マルミカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum trigynum サンコカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum trinacriforme カケロマカンアオイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Asarum yaeyamense ヤエヤマカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| EN 絶滅危惧IB類 | Eurya boninensis ムニンヒサカキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/73 (0.0%) | 1/227 (0.4%) | — |
| EN 絶滅危惧IB類 | Hypericum oliganthum アゼオトギリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 8 | 4/361 (1.1%) | 4/432 (0.9%) | — |
| EN 絶滅危惧IB類 | Hypericum sampsonii ツキヌキオトギリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 8 | 4/361 (1.1%) | 4/432 (0.9%) | — |
| EN 絶滅危惧IB類 | Corydalis gigantea エゾオオケマン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 15 | 1/228 (0.4%) | 11/578 (1.9%) | — |
| EN 絶滅危惧IB類 | Corydalis ochotensis ツルキケマン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 15 | 1/228 (0.4%) | 11/578 (1.9%) | — |
| EN 絶滅危惧IB類 | Papaver fauriei リシリヒナゲシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 15 | 6/79 (7.6%) | 11/578 (1.9%) | — |
| EN 絶滅危惧IB類 | Arabidopsis kamchatica subsp. kawasakiana タチスズシロソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 310 | 537 | 6/25 (24.0%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Arabidopsis umezawana リシリハタザオ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 310 | 537 | 6/25 (24.0%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Cardamine arakiana オオマルバコンロンソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 537 | 6/220 (2.7%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Cardamine pratensis ハナタネツケバナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 537 | 6/220 (2.7%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Cardamine trifida ミヤウチソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 537 | 6/220 (2.7%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Draba japonica ナンブイヌナズナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Draba kitadakensis キタダケナズナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Draba oiana ヤツガタケナズナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Draba sachalinensis モイワナズナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Draba sakuraii トガクシナズナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Draba shiroumana シロウマナズナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Subularia aquatica ハリナズナ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 537 | 0/2 (0.0%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Thlaspi japonicum タカネグンバイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 537 | 1/14 (7.1%) | 108/3414 (3.2%) | — |
| EN 絶滅危惧IB類 | Loropetalum chinense トキワマンサク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/4 (0.0%) | 3/103 (2.9%) | — |
| EN 絶滅危惧IB類 | Hylotelephium sieboldii var. sieboldii ミセバヤ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 7 | 0/26 (0.0%) | 6/1210 (0.5%) | — |
| EN 絶滅危惧IB類 | Hylotelephium sordidum var. oishii オオチチッパベンケイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/26 (0.0%) | 6/1210 (0.5%) | — |
| EN 絶滅危惧IB類 | Phedimus sikokianus ヒメキリンソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/26 (0.0%) | 6/1210 (0.5%) | — |
| EN 絶滅危惧IB類 | Sedum japonicum subsp. boninense ムニンタイトゴメ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/255 (0.4%) | 6/1210 (0.5%) | — |
| EN 絶滅危惧IB類 | Astilbe platyphylla モミジバショウマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/31 (0.0%) | 3/831 (0.4%) | — |
| EN 絶滅危惧IB類 | Cardiandra amamiohsimensis アマミクサアジサイ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 1/136 (0.7%) | 1/262 (0.4%) | — |
| EN 絶滅危惧IB類 | Saxifraga laciniata クモマユキノシタ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/503 (0.2%) | 3/831 (0.4%) | — |
| EN 絶滅危惧IB類 | Saxifraga nelsoniana var. reniformis チシマイワブキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/74 (0.0%) | 3/831 (0.4%) | — |
| EN 絶滅危惧IB類 | Deutzia yaeyamensis ヤエヤマヒメウツギ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/74 (0.0%) | 1/262 (0.4%) | — |
| EN 絶滅危惧IB類 | Pittosporum boninense var. chichijimense オオミノトベラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/111 (0.9%) | 1/137 (0.7%) | — |
| EN 絶滅危惧IB類 | Albizia kalkora オオバネムノキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/131 (0.8%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Albizia retusa ヤエヤマネムノキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/131 (0.8%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Astragalus schelichovii カラフトモメンヅル | — | — | — | — | — | No | — | — | — | 0 | 6 | 328 | 3/1607 (0.2%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Astragalus tokachiensis トカチオウギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 328 | 3/1607 (0.2%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Astragalus yamamotoi カリバオウギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 328 | 3/1607 (0.2%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Cassia mimosoides ガランピネムチャ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/275 (0.4%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Hedysarum hedysaroides カラフトゲンゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/154 (0.0%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Lespedeza argyrophylla コシキジマハギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/65 (1.5%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Oxytropis campestris subsp. rishiriensis リシリゲンゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/267 (0.4%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Oxytropis japonica var. sericea エゾオヤマノエンドウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/267 (0.4%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Oxytropis megalantha レブンソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/267 (0.4%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Oxytropis shokanbetsuensis マシケゲンゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/267 (0.4%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Phyllodium pulchellum ウチワツナギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/9 (0.0%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Sophora tomentosa イソフジ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 328 | 1/64 (1.6%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Uraria lagopodioides オオバフジボグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/9 (0.0%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Vigna nakashimae ヒメツルアズキ | — | ✓ | — | ✓ | ✓ | Yes (2) | Chromosome, Reference | 550 Mbp 35.0x | 42 22.8 Mbp | 2 | 34 | 328 | 9/95 (9.5%) | 143/16133 (0.9%) | 2023-12-27 |
| EN 絶滅危惧IB類 | Vigna vexillata var. tsusimensis アカササゲ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 34 | 328 | 9/95 (9.5%) | 143/16133 (0.9%) | — |
| EN 絶滅危惧IB類 | Cladopus doianus カワゴケソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/14 (0.0%) | 0/404 (0.0%) | — |
| EN 絶滅危惧IB類 | Hydrobryum puncticulatum ヤクシマカワゴロモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/41 (0.0%) | 0/404 (0.0%) | — |
| EN 絶滅危惧IB類 | Tribulus terrestris ハマビシ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/33 (0.0%) | 0/269 (0.0%) | — |
| EN 絶滅危惧IB類 | Chamaesyce hirta var. glaberrima テリハニシキソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 22 | 81 | 15/1294 (1.2%) | 46/3652 (1.3%) | — |
| EN 絶滅危惧IB類 | Euphorbia pekinensis subsp. asoensis アソタイゲキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 81 | 15/1294 (1.2%) | 46/3652 (1.3%) | — |
| EN 絶滅危惧IB類 | Phyllanthus liukiuensis ハナコミカンボク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/23 (0.0%) | 3/876 (0.3%) | — |
| EN 絶滅危惧IB類 | Melicope grisea var. crassifolia アツバシロテツ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 95 | 0/145 (0.0%) | 36/1482 (2.4%) | — |
| EN 絶滅危惧IB類 | Polygala tatarinowii ヒナノキンチャク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/154 (0.0%) | 0/682 (0.0%) | — |
| EN 絶滅危惧IB類 | Choerospondias axillaris チャンチンモドキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/1 (0.0%) | 6/577 (1.0%) | — |
| EN 絶滅危惧IB類 | Acer miyabei var. shibatae シバタカエデ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 20 | 4/171 (2.3%) | 11/1121 (1.0%) | — |
| EN 絶滅危惧IB類 | Acer pictum subsp. taishakuense タイシャクイタヤ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 20 | 4/171 (2.3%) | 11/1121 (1.0%) | — |
| EN 絶滅危惧IB類 | Sabia japonica アオカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/21 (0.0%) | 0/100 (0.0%) | — |
| EN 絶滅危惧IB類 | Impatiens hypophylla var. microhypophylla エンシュウツリフネソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 3/620 (0.5%) | 3/621 (0.5%) | — |
| EN 絶滅危惧IB類 | Ilex mertensii var. beecheyi ムニンモチ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 3/343 (0.9%) | 3/347 (0.9%) | — |
| EN 絶滅危惧IB類 | Euonymus chibae ヒゼンマユミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 1/92 (1.1%) | 2/735 (0.3%) | — |
| EN 絶滅危惧IB類 | Nothapodytes nimmonianus クサミズキ | — | — | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/6 (16.7%) | 1/117 (0.9%) | — |
| EN 絶滅危惧IB類 | Colubrina asiatica ヤエヤマハマナツメ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/30 (0.0%) | 6/930 (0.6%) | — |
| EN 絶滅危惧IB類 | Rhamnus ishidae ミヤマハンモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/120 (0.0%) | 6/930 (0.6%) | — |
| EN 絶滅危惧IB類 | Vitis amurensis シラガブドウ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 615 Mbp 40.0x | 4,204 2.03 Mbp | 2 | 279 | 281 | 38/246 (15.4%) | 40/842 (4.8%) | 2020-12-17 |
| EN 絶滅危惧IB類 | Elaeocarpus multiflorus ナガバコバンモチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/132 (0.8%) | 2/256 (0.8%) | — |
| EN 絶滅危惧IB類 | Tilia mandshurica var. rufovillosa ツクシボダイジュ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 129 | 1/42 (2.4%) | 60/2539 (2.4%) | — |
| EN 絶滅危惧IB類 | Triumfetta semitriloba カラピンラセンソウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 129 | 0/30 (0.0%) | 60/2539 (2.4%) | — |
| EN 絶滅危惧IB類 | Daphnimorpha capitellata ツチビノキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/2 (0.0%) | 6/559 (1.1%) | — |
| EN 絶滅危惧IB類 | Elaeagnus takeshitae カツラギグミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 6 | 2/77 (2.6%) | 6/92 (6.5%) | — |
| EN 絶滅危惧IB類 | Elaeagnus yakusimensis ヤクシマグミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 6 | 2/77 (2.6%) | 6/92 (6.5%) | — |
| EN 絶滅危惧IB類 | Viola alliariifolia ジンヨウキスミレ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| EN 絶滅危惧IB類 | Viola epipsiloides タニマスミレ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| EN 絶滅危惧IB類 | Viola thibaudieri タデスミレ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| EN 絶滅危惧IB類 | Viola utchinensis オキナワスミレ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| EN 絶滅危惧IB類 | Stachyurus macrocarpus var. macrocarpus ナガバキブシ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/11 (0.0%) | — |
| EN 絶滅危惧IB類 | Stachyurus macrocarpus var. prunifolius ハザクラキブシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/11 (0.0%) | — |
| EN 絶滅危惧IB類 | Trichosanthes ovigera var. boninensis ムニンカラスウリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 154 | 2/107 (1.9%) | 59/971 (6.1%) | — |
| EN 絶滅危惧IB類 | Rotala rotundifolia ホザキキカシグサ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 21 | 0/20 (0.0%) | 9/405 (2.2%) | — |
| EN 絶滅危惧IB類 | Metrosideros boninensis ムニンフトモモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 78 | 1/60 (1.7%) | 62/2958 (2.1%) | — |
| EN 絶滅危惧IB類 | Melastoma tetramerum var. pentapetalum ハハジマノボタン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 4/60 (6.7%) | 4/3318 (0.1%) | — |
| EN 絶滅危惧IB類 | Haloragis chinensis ナガバアリノトウグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/16 (0.0%) | 2/143 (1.4%) | — |
| EN 絶滅危惧IB類 | Angelica shikokiana var. mayebarana クマノダケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Angelica ubatakensis ウバタケニンジン | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Bupleurum ajanense レブンサイコ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/98 (0.0%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Chamaele decumbens var. micrantha ヤクシマセントウソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/9 (0.0%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Heracleum sphondylium var. tsurugisanense ツルギハナウド | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 19 | 1/100 (1.0%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Nothosmyrnium japonicum カサモチ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/2 (0.0%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Pimpinella thellungiana var. gustavohegiana ツクシボウフウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/88 (0.0%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Sanicula kaiensis ヤマナシウマノミツバ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 19 | 2/47 (4.3%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Tilingia tsusimensis ツシマノダケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/1 (0.0%) | 14/3098 (0.5%) | — |
| EN 絶滅危惧IB類 | Pyrola minor エゾイチヤクソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 53 | 0/31 (0.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Chamaedaphne calyculata ヤチツツジ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 53 | 0/1 (0.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Menziesia yakushimensis ヤクシマヨウラクツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhododendron amagianum アマギツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhododendron amakusaense アマクサミツバツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhododendron dilatatum var. boreale ヒダカミツバツツジ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhododendron mayebarae var. ohsumiense オオスミミツバツツジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhododendron uwaense トキワバイカツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhododendron viscistylum タカクマミツバツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Rhododendron yedoense var. poukhanense チョウセンヤマツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| EN 絶滅危惧IB類 | Ardisia walkeri オオツルコウジ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 12 | 0/243 (0.0%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Androsace chamaejasme subsp. lehmanniana トチナイソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 12 | 1/97 (1.0%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Cortusa matthioli subsp. pekinensis var. sachalinensis サクラソウモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Lysimachia candida トウサワトラノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/162 (0.0%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Lysimachia leucantha サワトラノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/162 (0.0%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Lysimachia tashiroi オニコナスビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/162 (0.0%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Primula hidakana var. kamuiana カムイコザクラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Primula yuparensis ユウバリコザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Stimpsonia chamaedryoides ホザキザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/1 (0.0%) | 5/1484 (0.3%) | — |
| EN 絶滅危惧IB類 | Planchonella boninensis ムニンノキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/121 (0.0%) | 4/1042 (0.4%) | — |
| EN 絶滅危惧IB類 | Diospyros eriantha ヤワラケガキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 7 | 2/428 (0.5%) | 2/466 (0.4%) | — |
| EN 絶滅危惧IB類 | Symplocos konishii コニシハイノキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/209 (0.5%) | 1/210 (0.5%) | — |
| EN 絶滅危惧IB類 | Symplocos pergracilis チチジマクロキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/209 (0.5%) | 1/210 (0.5%) | — |
| EN 絶滅危惧IB類 | Forsythia togashii ショウドシマレンギョウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 62 | 3/21 (14.3%) | 40/595 (6.7%) | — |
| EN 絶滅危惧IB類 | Osmanthus insularis var. okinawensis ヤナギバモクセイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/42 (2.4%) | 40/595 (6.7%) | — |
| EN 絶滅危惧IB類 | Osmanthus rigidus オオモクセイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/42 (2.4%) | 40/595 (6.7%) | — |
| EN 絶滅危惧IB類 | Comastoma pulmonarium subsp. sectum サンプクリンドウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/11 (0.0%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Gentiana laeviuscula コヒナリンドウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/280 (1.1%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Gentiana yakushimensis ヤクシマリンドウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/280 (1.1%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Gentianella amarella subsp. takedae オノエリンドウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/98 (0.0%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Gentianella amarella subsp. yuparensis ユウバリリンドウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/98 (0.0%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Gentianopsis contorta チチブリンドウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/19 (0.0%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Gentianopsis yabei var. akaisiensis アカイシリンドウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/19 (0.0%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Lomatogonium carinthiacum ヒメセンブリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/16 (0.0%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Tripterospermum distylum ハナヤマツルリンドウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/34 (0.0%) | 4/1131 (0.4%) | — |
| EN 絶滅危惧IB類 | Vincetoxicum austrokiusianum ナンゴクカモメヅル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| EN 絶滅危惧IB類 | Vincetoxicum matsumurae ヒメイヨカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| EN 絶滅危惧IB類 | Hedyotis chrysotricha コバンムグラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/8 (0.0%) | 28/6178 (0.5%) | — |
| EN 絶滅危惧IB類 | Morinda umbellata subsp. boninensis var. hahazimensis ハハジマハナガサノキ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 39 | 1/41 (2.4%) | 28/6178 (0.5%) | — |
| EN 絶滅危惧IB類 | Randia sinensis ヒジハリノキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/6 (0.0%) | 28/6178 (0.5%) | — |
| EN 絶滅危惧IB類 | Serissa japonica ハクチョウゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/2 (0.0%) | 28/6178 (0.5%) | — |
| EN 絶滅危惧IB類 | Polemonium caeruleum subsp. laxiflorum var. laxiflorum カラフトハナシノブ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/31 (0.0%) | 1/420 (0.2%) | — |
| EN 絶滅危惧IB類 | Evolvulus alsinoides var. rotundifolius マルバアサガオガラクサ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/14 (0.0%) | 11/1194 (0.9%) | — |
| EN 絶滅危惧IB類 | Lithospermum erythrorhizon ムラサキ | — | ✓ | ✓ | ✓ | ✓ | Yes (3) | Contig, Reference | 367 Mbp 100.0x | 2,451 316 kbp | 3 | 3 | 7 | 1/64 (1.6%) | 4/1307 (0.3%) | 2021-08-12 |
| EN 絶滅危惧IB類 | Trigonotis iinumae ツルカメバソウ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 7 | 0/37 (0.0%) | 4/1307 (0.3%) | — |
| EN 絶滅危惧IB類 | Trigonotis radicans var. sericea チョウセンカメバソウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 7 | 0/37 (0.0%) | 4/1307 (0.3%) | — |
| EN 絶滅危惧IB類 | Callicarpa parvifolia ウラジロコムラサキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/74 (0.0%) | 44/4334 (1.0%) | — |
| EN 絶滅危惧IB類 | Ajuga boninsimae シマカコソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 67 | 2/43 (4.7%) | 44/4334 (1.0%) | — |
| EN 絶滅危惧IB類 | Ajuga incisa ヒイラギソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 67 | 2/43 (4.7%) | 44/4334 (1.0%) | — |
| EN 絶滅危惧IB類 | Salvia pygmaea var. simplicior アマミタムラソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 14 | 67 | 8/724 (1.1%) | 44/4334 (1.0%) | — |
| EN 絶滅危惧IB類 | Scutellaria kikai-insularis ヒメタツナミソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 67 | 4/277 (1.4%) | 44/4334 (1.0%) | — |
| EN 絶滅危惧IB類 | Scutellaria longituba ムニンタツナミソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 67 | 4/277 (1.4%) | 44/4334 (1.0%) | — |
| EN 絶滅危惧IB類 | Scutellaria shikokiana var. pubicaulis ケミヤマナミキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 67 | 4/277 (1.4%) | 44/4334 (1.0%) | — |
| EN 絶滅危惧IB類 | Teucrium veronicoides var. veronicoides エゾニガクサ | — | — | — | — | — | No | — | — | — | 0 | 0 | 67 | 0/114 (0.0%) | 44/4334 (1.0%) | — |
| EN 絶滅危惧IB類 | Lycianthes boninensis ムニンホオズキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 283 | 0/53 (0.0%) | 91/2447 (3.7%) | — |
| EN 絶滅危惧IB類 | Physalis chamaesarachoides ヤマホオズキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 283 | 1/23 (4.3%) | 91/2447 (3.7%) | — |
| EN 絶滅危惧IB類 | Euphrasia insignis subsp. iinumae var. idzuensis イズコゴメグサ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| EN 絶滅危惧IB類 | Euphrasia multifolia var. multifolia ツクシコゴメグサ | — | — | — | ✓ | — | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| EN 絶滅危惧IB類 | Gratiola fluviatilis カミガモソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/18 (0.0%) | 35/1677 (2.1%) | — |
| EN 絶滅危惧IB類 | Limnophila fragrans エナシシソクサ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/10 (0.0%) | 35/1677 (2.1%) | — |
| EN 絶滅危惧IB類 | Mazus goodenifolius ヒメサギゴケ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 0 | 0/37 (0.0%) | 0/38 (0.0%) | — |
| EN 絶滅危惧IB類 | Melampyrum setaceum ホソバママコナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 1/19 (5.3%) | 10/1409 (0.7%) | — |
| EN 絶滅危惧IB類 | Monochasma savatieri ウスユキクチナシグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/2 (0.0%) | 10/1409 (0.7%) | — |
| EN 絶滅危惧IB類 | Pedicularis oederi subsp. heteroglossa キバナシオガマ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/421 (0.0%) | 10/1409 (0.7%) | — |
| EN 絶滅危惧IB類 | Torenia concolor var. formosana ツルウリクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/28 (0.0%) | 3/144 (2.1%) | — |
| EN 絶滅危惧IB類 | Veronica linariifolia ホソバヒメトラノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| EN 絶滅危惧IB類 | Veronicastrum sp. イスミスズカケ | — | — | — | — | — | No | — | — | — | 0 | 0 | 44 | 0/16 (0.0%) | 35/1677 (2.1%) | — |
| EN 絶滅危惧IB類 | Lagotis takedana ユウバリソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/27 (0.0%) | 35/1677 (2.1%) | — |
| EN 絶滅危惧IB類 | Lagotis yesoensis ホソバウルップソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/27 (0.0%) | 35/1677 (2.1%) | — |
| EN 絶滅危惧IB類 | Trapella sinensis ヒシモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/1 (0.0%) | 8/59 (13.6%) | — |
| EN 絶滅危惧IB類 | Utricularia dimorphantha フサタヌキモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/210 (1.0%) | 5/348 (1.4%) | — |
| EN 絶滅危惧IB類 | Utricularia minutissima ヒメミミカキグサ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/210 (1.0%) | 5/348 (1.4%) | — |
| EN 絶滅危惧IB類 | Lonicera alpigena subsp. glehnii var. watanabeana スルガヒョウタンボク | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| EN 絶滅危惧IB類 | Lonicera demissa var. borealis キタカミヒョウタンボク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| EN 絶滅危惧IB類 | Lonicera fragrantissima ツシマヒョウタンボク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| EN 絶滅危惧IB類 | Lonicera linderifolia var. konoi コゴメヒョウタンボク | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| EN 絶滅危惧IB類 | Lonicera linderifolia var. linderifolia ヤブヒョウタンボク | — | — | — | ✓ | — | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| EN 絶滅危惧IB類 | Lonicera ramosissima var. kinkiensis キンキヒョウタンボク | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| EN 絶滅危惧IB類 | Viburnum carlesii var. carlesii オオチョウジガマズミ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/175 (0.0%) | 1/206 (0.5%) | — |
| EN 絶滅危惧IB類 | Viburnum japonicum var. boninsimense トキワガマズミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/175 (0.0%) | 1/206 (0.5%) | — |
| EN 絶滅危惧IB類 | Viburnum koreanum ヒロハガマズミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/175 (0.0%) | 1/206 (0.5%) | — |
| EN 絶滅危惧IB類 | Patrinia sibirica チシマキンレイカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/13 (0.0%) | 3/682 (0.4%) | — |
| EN 絶滅危惧IB類 | Patrinia triloba var. takeuchiana オオキンレイカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/13 (0.0%) | 3/682 (0.4%) | — |
| EN 絶滅危惧IB類 | Adenophora takedae var. howozana ホウオウシャジン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| EN 絶滅危惧IB類 | Adenophora tashiroi シマシャジン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| EN 絶滅危惧IB類 | Campanula glomerata var. dahurica ヤツシロソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 10 | 2/462 (0.4%) | 8/1490 (0.5%) | — |
| EN 絶滅危惧IB類 | Lobelia loochooensis マルバハタケムシロ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/188 (0.5%) | 8/1490 (0.5%) | — |
| EN 絶滅危惧IB類 | Achillea ptarmica subsp. macrocephala var. yezoensis ホソバエゾノコギリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/82 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Arnica sachalinensis オオウサギギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/32 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Artemisia gilvescens ワタヨモギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Artemisia kitadakensis キタダケヨモギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Artemisia koidzumii var. megaphylla オオバヨモギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Artemisia momiyamae ユキヨモギ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Aster asagrayi var. asagrayi イソノギク | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Aster asagrayi var. walkeri ヨナクニイソノギク | — | — | — | — | — | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Aster rugulosus var. shibukawaensis シブカワシロギク | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Aster tenuipes クルマギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Chrysanthemum zawadskii var. alpinum チョウセンノギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 141 | 3/46 (6.5%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Cirsium ashinokuraense アシノクラアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Cirsium ganjuense ガンジュアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Cirsium happoense ハッポウアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Cirsium opacum カツラカワアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Cirsium pseudosuffultum ニセツクシアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Cirsium tanegashimense タネガシマアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Cirsium tenue ウスバアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Conyza leucantha ネバリイズハハコ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 141 | 1/30 (3.3%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Crepidiastrum ameristophyllum ユズリハワダン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Crepidiastrum yoshinoi イワヤクシソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Crepis hokkaidoensis フタマタタンポポ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/112 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Erigeron thunbergii subsp. glabratus var. angustifolius アポイアズマギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 141 | 3/186 (1.6%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Gnaphalium hypoleucum アキノハハコグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 1/79 (1.3%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Hypochaeris crepidioides エゾコウゾリナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/49 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Ixeridium beauverdianum ホソバニガナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Leontopodium discolor エゾウスユキソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/48 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Leontopodium hayachinense ハヤチネウスユキソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/48 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Myriactis japonensis ヒメキクタビラコ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/5 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Parasenecio farfarifolius var. acerinus ミヤマコウモリソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/52 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Pertya yakushimensis シマコウヤボウキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/8 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Saussurea japonica ヒナヒゴタイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Saussurea nipponica subsp. higomontana ツクシトウヒレン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Saussurea yanagisawae ウスユキトウヒレン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Senecio argunensis コウリンギク | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/38 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Syneilesis tagawae ヤブレガサモドキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/4 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Taraxacum kuzakaiense クザカイタンポポ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 141 | 1/476 (0.2%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Taraxacum trigonolobum クモマタンポポ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 141 | 1/476 (0.2%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Taraxacum yuparense タカネタンポポ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 141 | 1/476 (0.2%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Tephroseris flammea subsp. flammea タカネコウリンギク | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 141 | 0/34 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Tephroseris furusei キバナコウリンカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/34 (0.0%) | 84/16157 (0.5%) | — |
| EN 絶滅危惧IB類 | Alisma canaliculatum var. azuminoense アズミノヘラオモダカ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/11 (9.1%) | 1/142 (0.7%) | — |
| EN 絶滅危惧IB類 | Blyxa alternifolia セトヤナギスブタ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/3 (0.0%) | 3/215 (1.4%) | — |
| EN 絶滅危惧IB類 | Najas ancistrocarpa ムサシモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/30 (0.0%) | 3/215 (1.4%) | — |
| EN 絶滅危惧IB類 | Sciaphila tenella タカクマソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/18 (0.0%) | 0/29 (0.0%) | — |
| EN 絶滅危惧IB類 | Allium schoenoprasum var. idzuense イズアサツキ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/646 (0.5%) | 5/1496 (0.3%) | — |
| EN 絶滅危惧IB類 | Allium togashii カンカケイニラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/646 (0.5%) | 5/1496 (0.3%) | — |
| EN 絶滅危惧IB類 | Allium virgunculae var. koshikiense コシキイトラッキョウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/646 (0.5%) | 5/1496 (0.3%) | — |
| EN 絶滅危惧IB類 | Allium virgunculae var. yakushimense ヤクシマイトラッキョウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 9 | 3/646 (0.5%) | 5/1496 (0.3%) | — |
| EN 絶滅危惧IB類 | Asparagus kiusianus ハマタマボウキ | EN | ✓ | ✓ | ✓ | ✓ | Yes (4) | Scaffold, Reference | 1.62 Gbp 44.0x | 178,116 16.6 kbp | 4 | 7 | 17 | 4/211 (1.9%) | 13/1467 (0.9%) | 2022-02-09 |
| EN 絶滅危惧IB類 | Asparagus oligoclonos タマボウキ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 17 | 4/211 (1.9%) | 13/1467 (0.9%) | — |
| EN 絶滅危惧IB類 | Chionographis hisauchiana subsp. minoensis ミノシライトソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/4 (25.0%) | 1/204 (0.5%) | — |
| EN 絶滅危惧IB類 | Fritillaria kaiensis カイコバイモ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/140 (0.0%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Gagea japonica ヒメアマナ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/157 (0.0%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Hosta hypoleuca ウラジロギボウシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/46 (0.0%) | 13/1467 (0.9%) | — |
| EN 絶滅危惧IB類 | Hosta pulchella ウバタケギボウシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/46 (0.0%) | 13/1467 (0.9%) | — |
| EN 絶滅危惧IB類 | Hosta pycnophylla セトウチギボウシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/46 (0.0%) | 13/1467 (0.9%) | — |
| EN 絶滅危惧IB類 | Lilium callosum var. callosum ノヒメユリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/151 (0.7%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Lilium concolor ヒメユリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/151 (0.7%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Lilium japonicum var. abeanum ジンリョウユリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/151 (0.7%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Lilium maculatum var. bukosanense ミヤマスカシユリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/151 (0.7%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Petrosavia sakuraii サクライソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/6 (0.0%) | — |
| EN 絶滅危惧IB類 | Polygonatum cryptanthum ウスギワニグチソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/68 (0.0%) | 13/1467 (0.9%) | — |
| EN 絶滅危惧IB類 | Polygonatum desoulavyi コウライワニグチソウ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 17 | 0/68 (0.0%) | 13/1467 (0.9%) | — |
| EN 絶滅危惧IB類 | Smilax bracteata subsp. verruculosa アラガタオオサンキライ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/197 (0.5%) | 1/200 (0.5%) | — |
| EN 絶滅危惧IB類 | Tofieldia coccinea var. akkana アッカゼキショウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/22 (0.0%) | — |
| EN 絶滅危惧IB類 | Tofieldia coccinea var. geibiensis ゲイビゼキショウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/22 (0.0%) | — |
| EN 絶滅危惧IB類 | Tricyrtis ishiiana var. ishiiana サガミジョウロウホトトギス | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 2 | 0/35 (0.0%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Tricyrtis ishiiana var. surugensis スルガジョウロウホトトギス | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/35 (0.0%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Tricyrtis perfoliata キバナノツキヌキホトトギス | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/35 (0.0%) | 2/752 (0.3%) | — |
| EN 絶滅危惧IB類 | Trillium channellii カワユエンレイソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/53 (0.0%) | 1/204 (0.5%) | — |
| EN 絶滅危惧IB類 | Dioscorea asclepiadea ツクシタチドコロ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 12 | 5/343 (1.5%) | 6/348 (1.7%) | — |
| EN 絶滅危惧IB類 | Iris setosa var. hondoensis キリガミネヒオウギアヤメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 8 | 5/302 (1.7%) | 6/1487 (0.4%) | — |
| EN 絶滅危惧IB類 | Thismia abei タヌキノショクダイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/58 (0.0%) | 0/62 (0.0%) | — |
| EN 絶滅危惧IB類 | Juncus hizenensis ヒゼンコウガイゼキショウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 10 | 2/164 (1.2%) | 4/282 (1.4%) | — |
| EN 絶滅危惧IB類 | Juncus mertensianus エゾノミクリゼキショウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 10 | 2/164 (1.2%) | 4/282 (1.4%) | — |
| EN 絶滅危惧IB類 | Juncus tokubuchii ホロムイコウガイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 10 | 2/164 (1.2%) | 4/282 (1.4%) | — |
| EN 絶滅危惧IB類 | Luzula elata セイタカヌカボシソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 10 | 2/92 (2.2%) | 4/282 (1.4%) | — |
| EN 絶滅危惧IB類 | Eriocaulon dimorphoelytrum ユキイヌノヒゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EN 絶滅危惧IB類 | Eriocaulon mikawanum var. azumianum アズミイヌノヒゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EN 絶滅危惧IB類 | Eriocaulon miquelianum var. lutchuense オキナワホシクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EN 絶滅危惧IB類 | Eriocaulon omuranum オオムラホシクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EN 絶滅危惧IB類 | Eriocaulon ozense ハライヌノヒゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EN 絶滅危惧IB類 | Eriocaulon senile ゴマシオホシクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EN 絶滅危惧IB類 | Eriocaulon zyotanii イズノシマホシクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/153 (0.7%) | 1/501 (0.2%) | — |
| EN 絶滅危惧IB類 | Agrostis hideoi ユキクラヌカボ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/77 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Aristida takeoi オオマツバシバ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/134 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Brachiaria villosa ビロードキビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 949 | 2/57 (3.5%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Calamagrostis nana subsp. hayachinensis ザラツキヒナガリヤス | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/100 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Calamagrostis onibitoana オニビトノガリヤス | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/100 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Calamagrostis tashiroi タシロノガリヤス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/100 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Deschampsia cespitosa var. levis ユウバリカニツリ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 949 | 0/40 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Digitaria platycarpha シマギョウギシバ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 949 | 3/82 (3.7%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Elymus gmelinii var. tenuisetus イヌカモジグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 949 | 1/154 (0.6%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Elymus yubaridakensis タカネエゾムギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 949 | 1/154 (0.6%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Eriachne armittii イゼナガヤ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 949 | 0/33 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Festuca hondoensis ヤマオオウシノケグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/315 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Heteropogon contortus アカヒゲガヤ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/6 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Hierochloe pluriflora エゾコウボウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/8 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Ischaemum ischaemoides シマカモノハシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/26 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Poa hayachinensis ナンブソモソモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/1 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Poa nemoralis タチイチゴツナギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 949 | 6/372 (1.6%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Stipa alpina ヒゲナガコメススキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 949 | 1/105 (1.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Tripogon longearistatus var. japonicus フクロダガヤ | — | — | — | — | — | No | — | — | — | 0 | 0 | 949 | 0/14 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Trisetum spicatum subsp. molle キタダケカニツリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 949 | 0/31 (0.0%) | 152/8634 (1.8%) | — |
| EN 絶滅危惧IB類 | Arisaema abei ツルギテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| EN 絶滅危惧IB類 | Arisaema heterocephalum subsp. heterocephalum アマミテンナンショウ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| EN 絶滅危惧IB類 | Arisaema iyoanum subsp. iyoanum オモゴウテンナンショウ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| EN 絶滅危惧IB類 | Arisaema iyoanum subsp. nakaianum シコクテンナンショウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| EN 絶滅危惧IB類 | Arisaema longipedunculatum var. longipedunculatum シコクヒロハテンナンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| EN 絶滅危惧IB類 | Arisaema nambae タカハシテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| EN 絶滅危惧IB類 | Arisaema nikoense subsp. australe オオミネテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| EN 絶滅危惧IB類 | Arisaema sachalinense カラフトヒロハテンナンショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 26 | 0/149 (0.0%) | 12/1764 (0.7%) | — |
| EN 絶滅危惧IB類 | Freycinetia williamsii ヒメツルアダン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/37 (0.0%) | 1/277 (0.4%) | — |
| EN 絶滅危惧IB類 | Sparganium hyperboreum チシマミクリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/47 (0.0%) | 1/77 (1.3%) | — |
| EN 絶滅危惧IB類 | Carex bigelowii オハグロスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex bohemica カヤツリスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex capillaris タカネシバスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex chichijimensis チチジマナキリスゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex genkaiensis ゲンカイモエギスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex gynocrates カンチスゲ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex latisquamea ハタベスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex loliacea アカンスゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex mackenziei ノルゲスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex melanocarpa タカネヒメスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex omurae スルガスゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex paxii キビノミノボロスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex peiktusanii マンシュウクロカワスゲ | — | ✓ | — | — | — | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex pseudocyperus クグスゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex pseudololiacea ヒロハイッポンスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex ramenskii ウシオスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex rupestris カラフトイワスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex schmidtii シュミットスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex stylosa ラウススゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex subcernua ツクシナルコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex uda エゾハリスゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Carex vaginata サヤスゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 34 | 54 | 20/1654 (1.2%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Cyperus ohwii ツクシオオガヤツリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Cyperus rotundus var. yoshinagae トサノハマスゲ | — | ✓ | — | — | — | No | — | — | — | 0 | 5 | 54 | 3/356 (0.8%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Eleocharis acutangula ミスミイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 54 | 2/182 (1.1%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Fimbristylis longispica var. hahajimensis ハハジマテンツキ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/68 (0.0%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Fimbristylis stauntonii var. stauntonii ハタケテンツキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/68 (0.0%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Fimbristylis umbellaris ハナシテンツキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/68 (0.0%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Rhynchospora malasica ミクリガヤ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 54 | 3/171 (1.8%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Schoenoplectus mucronatus var. ishizawae ロッカクイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/29 (0.0%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Scirpus rosthornii var. kiushuensis ツクシアブラガヤ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 54 | 1/38 (2.6%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Scleria biflora ホソバシンジュガヤ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 54 | 0/156 (0.0%) | 34/3532 (1.0%) | — |
| EN 絶滅危惧IB類 | Amitostigma gracile ヒナラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/51 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Amitostigma keiskei イワチドリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/51 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Aphyllorchis montana タネガシマムヨウラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/7 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Apostasia wallichii var. nipponica ヤクシマラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/16 (12.5%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Arundina graminifolia ナリヤラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/2 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Bulbophyllum macraei var. macraei シコウラン | — | — | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/697 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Calanthe aristulifera var. kirishimensis キリシマエビネ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Calanthe formosana タイワンエビネ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Calanthe izuinsularis オオキリシマエビネ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Calanthe sieboldii キエビネ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Calanthe tokunoshimensis トクノシマエビネ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/77 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Calypso bulbosa var. speciosa ホテイラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/1 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Corymborkis subdensa チクセツラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/4 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Crepidium kandae カンダヒメラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/28 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Cymbidium aberrans サガミランモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 28 | 1/111 (0.9%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Cymbidium kanran カンラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 28 | 1/111 (0.9%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Cymbidium lancifolium アキザキナギラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 28 | 1/111 (0.9%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Cypripedium macranthos var. rebunense レブンアツモリソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/66 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Dendrobium catenatum キバナノセッコク | — | ✓ | — | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.10 Gbp 202.0x | 311,840 51.7 kbp | 1 | 7 | 28 | 7/508 (1.4%) | 22/11634 (0.2%) | 2017-12-12 |
| EN 絶滅危惧IB類 | Dendrobium okinawense オキナワセッコク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 28 | 7/508 (1.4%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Didymoplexis minor ヒメヤツシロラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/2 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Eleorchis japonica var. conformis キリガミネアサヒラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/1 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Epipogium aphyllum トラキチラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/2 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Eria corneri オオオサラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/42 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Eria ovata リュウキュウセッコク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/27 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Eulophia toyoshimae イモラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/76 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Eulophia zollingeri イモネヤガラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/76 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Gastrodia boninensis ムニンヤツシロラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 1/25 (4.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Gastrodia gracilis ナヨテンマ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 1/25 (4.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Gastrodia uraiensis タブガワヤツシロラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 1/25 (4.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Geodorum densiflorum トサカメオトラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/6 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Goodyera pendula var. brachyphylla ヒロハツリシュスラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/61 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Goodyera sonoharae クニガミシュスラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/61 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Habenaria dentata ダイサギソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/319 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Habenaria linearifolia var. linearifolia オオミズトンボ | — | — | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/319 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Habenaria pantlingiana リュウキュウサギソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/319 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Habenaria stenopetala テツオサギソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/319 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Hammarbya paludosa ヤチラン | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/1 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Herminium lanceum ムカゴソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/51 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Heterozeuxine odorata ジャコウキヌラン | NT | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EN 絶滅危惧IB類 | Liparis auriculata ギボウシラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Liparis koreojaponica オオフガクスズムシソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Liparis krameri var. shichitoana ヒメジガバチソウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Liparis odorata ササバラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Liparis sp. クロクモキリソウ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/141 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Luisia boninensis ムニンボウラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/20 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Malaxis hahajimensis ハハジマホザキラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/28 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Neottia inagakii タンザワサカネラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/41 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Neottianthe fujisanensis フジチドリ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 28 | 0/1 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Nervilia nipponica ムカゴサイシン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/60 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Oberonia anthropophora var. arisanensis クスクスヨウラクラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/64 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Odontochilus tashiroi オオギミラン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/13 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Orchis graminifolia var. micropunctata (in schedule) サツマチドリ | — | — | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/28 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Peristylus flagellifer ムカゴトンボ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/28 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Peristylus iyoensis イヨトンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/319 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Platanthera amabilis ヤクシマチドリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Platanthera boninensis シマツレサギソウ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Platanthera brevicalcarata subsp. yakumontana ツクシチドリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Platanthera iinumae イイヌマムカゴ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Platanthera stenoglossa subsp. iriomotensis イリオモテトンボソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Platanthera takedae subsp. uzenensis ガッサンチドリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 28 | 2/117 (1.7%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Sedirea japonica ナゴラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 28 | 3/90 (3.3%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Trichoglottis lutchuensis イリオモテラン | — | — | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/21 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Tropidia angulosa アコウネッタイラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/11 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Tropidia nipponica var. hachijoensis ハチジョウネッタイラン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/11 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Tropidia nipponica var. nipponica ヤクシマネッタイラン | — | — | — | — | — | No | — | — | — | 0 | 0 | 28 | 0/11 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Vrydagzynea nuda ミソボシラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/10 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Yoania amagiensis キバナノショウキラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/5 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Yoania flava シナノショウキラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/5 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Zeuxine affinis アオジクキヌラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/16 (0.0%) | 22/11634 (0.2%) | — |
| EN 絶滅危惧IB類 | Picea koyamae ヤツガタケトウヒ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 36 | 5/55 (9.1%) | 15/324 (4.6%) | — |
| EN 絶滅危惧IB類 | Pinus amamiana ヤクタネゴヨウ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 36 | 5/152 (3.3%) | 15/324 (4.6%) | — |
| EN 絶滅危惧IB類 | Lycopodium alpinum チシマヒカゲノカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/31 (3.2%) | 1/328 (0.3%) | — |
| EN 絶滅危惧IB類 | Lycopodium phlegmaria ヨウラクヒバ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/189 (0.0%) | 1/328 (0.3%) | — |
| EN 絶滅危惧IB類 | Lycopodium sieboldii var. sieboldii ヒモラン | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/189 (0.0%) | 1/328 (0.3%) | — |
| EN 絶滅危惧IB類 | Isoetes sinensis var. coreana オオバシナミズニラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/208 (1.0%) | 2/208 (1.0%) | — |
| EN 絶滅危惧IB類 | Helminthostachys zeylanica ミヤコジマハナワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/1 (0.0%) | 0/143 (0.0%) | — |
| EN 絶滅危惧IB類 | Ophioglossum kawamurae サクラジマハナヤスリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/50 (0.0%) | 0/143 (0.0%) | — |
| EN 絶滅危惧IB類 | Ophioglossum pendulum コブラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/5 (0.0%) | 0/143 (0.0%) | — |
| EN 絶滅危惧IB類 | Crepidomanes bonincola ムニンホラゴケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/33 (0.0%) | 0/452 (0.0%) | — |
| EN 絶滅危惧IB類 | Hymenophyllum mikawanum ミカワコケシノブ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/183 (0.0%) | 0/452 (0.0%) | — |
| EN 絶滅危惧IB類 | Vandenboschia maxima シノブホラゴケ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/140 (0.0%) | 0/452 (0.0%) | — |
| EN 絶滅危惧IB類 | Vandenboschia miuraensis ミウラハイホラゴケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/19 (0.0%) | 0/452 (0.0%) | — |
| EN 絶滅危惧IB類 | Schizaea dichotoma カンザシワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/18 (0.0%) | 0/28 (0.0%) | — |
| EN 絶滅危惧IB類 | Azolla imbricata アカウキクサ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 10 | 10 | 7/20 (35.0%) | 7/43 (16.3%) | — |
| EN 絶滅危惧IB類 | Azolla japonica オオアカウキクサ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 10 | 10 | 7/20 (35.0%) | 7/43 (16.3%) | — |
| EN 絶滅危惧IB類 | Marsilea crenata ナンゴクデンジソウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/40 (0.0%) | 0/46 (0.0%) | — |
| EN 絶滅危惧IB類 | Plagiogyria koidzumii リュウキュウキジノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/19 (0.0%) | 0/19 (0.0%) | — |
| EN 絶滅危惧IB類 | Cyathea ogurae メヘゴ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/268 (0.0%) | 0/487 (0.0%) | — |
| EN 絶滅危惧IB類 | Lindsaea simulans ウチワホングウシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/150 (0.0%) | 0/200 (0.0%) | — |
| EN 絶滅危惧IB類 | Acrostichum aureum ミミモチシダ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/6 (0.0%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Adiantum capillus-junonis ホウライクジャク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/235 (0.9%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Adiantum edgeworthii オトメクジャク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/235 (0.9%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Antrophyum obovatum タキミシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/38 (0.0%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Cheilanthes krameri イワウラジロ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/40 (0.0%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Pteris nakasimae ヒノタニシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/254 (0.0%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Pteris natiensis ヤワラハチジョウシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/254 (0.0%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Pteris setulosocostulata トゲハチジョウシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/254 (0.0%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Pteris tokioi ヒカゲアマクサシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/254 (0.0%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Pteris yamatensis ヒメイノモトソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/254 (0.0%) | 3/1173 (0.3%) | — |
| EN 絶滅危惧IB類 | Monachosorum arakii ヒメムカゴシダ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/6 (0.0%) | 0/173 (0.0%) | — |
| EN 絶滅危惧IB類 | Asplenium formosae マキノシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/454 (0.0%) | 0/502 (0.0%) | — |
| EN 絶滅危惧IB類 | Asplenium oligophlebium var. iezimaense イエジマチャセンシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/454 (0.0%) | 0/502 (0.0%) | — |
| EN 絶滅危惧IB類 | Hymenasplenium excisum ラハオシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/46 (0.0%) | 0/502 (0.0%) | — |
| EN 絶滅危惧IB類 | Athyrium reflexipinnum サカバイヌワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| EN 絶滅危惧IB類 | Athyrium strigillosum コモチイヌワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| EN 絶滅危惧IB類 | Athyrium subrigescens ホウライイヌワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| EN 絶滅危惧IB類 | Athyrium viridescentipes アオグキイヌワラビ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| EN 絶滅危惧IB類 | Cornopteris banajaoensis ホソバシケチシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/129 (0.0%) | 0/447 (0.0%) | — |
| EN 絶滅危惧IB類 | Deparia otomasui アソシケシダ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/72 (0.0%) | 0/447 (0.0%) | — |
| EN 絶滅危惧IB類 | Diplazium okudairae イヨクジャク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/240 (0.0%) | 0/447 (0.0%) | — |
| EN 絶滅危惧IB類 | Thelypteris uraiensis タイワンハリガネワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/8 (0.0%) | 0/639 (0.0%) | — |
| EN 絶滅危惧IB類 | Arachniodes quadripinnata subsp. fimbriata ヒロハナライシダ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/100 (0.0%) | 3/1414 (0.2%) | — |
| EN 絶滅危惧IB類 | Ctenitis microlepigera コキンモウイノデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/68 (0.0%) | 3/1414 (0.2%) | — |
| EN 絶滅危惧IB類 | Ctenitis sinii サツマシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/68 (0.0%) | 3/1414 (0.2%) | — |
| EN 絶滅危惧IB類 | Dryopteris hendersonii ホウライヒメワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/421 (0.2%) | 3/1414 (0.2%) | — |
| EN 絶滅危惧IB類 | Polystichum atkinsonii センジョウデンダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| EN 絶滅危惧IB類 | Polystichum lonchitis ヒイラギデンダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| EN 絶滅危惧IB類 | Polystichum neolobatum ヤシャイノデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/252 (0.4%) | 3/1414 (0.2%) | — |
| EN 絶滅危惧IB類 | Colysis elegans コマチイワヒトデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/101 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Goniophlebium formosanum タイワンアオネカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Goniophlebium someyae ミョウギシダ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/17 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Grammitis dorsipila ヒメウラボシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/41 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Lepisorus clathratus トヨグチウラボシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/85 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Lepisorus miyoshianus クラガリシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/85 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Oreogrammitis tuyamae ナガバコウラボシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/76 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Phymatosorus nigrescens タカウラボシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/32 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Polypodium vulgare オオエゾデンダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/56 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Selliguea yakuinsularis ヤクシマウラボシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/73 (0.0%) | 0/1347 (0.0%) | — |
| EN 絶滅危惧IB類 | Tomophyllum sakaguchianum キレハオオクボシダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/13 (0.0%) | 0/1347 (0.0%) | — |
| VU 絶滅危惧II類 | Salicornia europaea アッケシソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 381 | 1/176 (0.6%) | 28/1282 (2.2%) | — |
| VU 絶滅危惧II類 | Suaeda japonica シチメンソウ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 381 | 2/102 (2.0%) | 28/1282 (2.2%) | — |
| VU 絶滅危惧II類 | Suaeda malacosperma ヒロハマツナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 381 | 2/102 (2.0%) | 28/1282 (2.2%) | — |
| VU 絶滅危惧II類 | Salix hukaoana ユビソヤナギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 27 | 61 | 11/461 (2.4%) | 28/881 (3.2%) | — |
| VU 絶滅危惧II類 | Salix nakamurana subsp. kurilensis ヒダカミネヤナギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 27 | 61 | 11/461 (2.4%) | 28/881 (3.2%) | — |
| VU 絶滅危惧II類 | Salix rupifraga コマイワヤナギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 27 | 61 | 11/461 (2.4%) | 28/881 (3.2%) | — |
| VU 絶滅危惧II類 | Quercus hondae ハナガガシ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 38 | 56 | 22/578 (3.8%) | 33/913 (3.6%) | — |
| VU 絶滅危惧II類 | Ficus nishimurae オオトキワイヌビワ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 24 | 7/784 (0.9%) | 15/1207 (1.2%) | — |
| VU 絶滅危惧II類 | Boehmeria formosana タイワントリアシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 10 | 1/71 (1.4%) | 4/1106 (0.4%) | — |
| VU 絶滅危惧II類 | Elatostema densiflorum トキホコリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/212 (0.0%) | 4/1106 (0.4%) | — |
| VU 絶滅危惧II類 | Parietaria micrantha var. coreana タチゲヒカゲミズ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 10 | 1/22 (4.5%) | 4/1106 (0.4%) | — |
| VU 絶滅危惧II類 | Pellionia yosiei ナガバサンショウソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/13 (0.0%) | 4/1106 (0.4%) | — |
| VU 絶滅危惧II類 | Pilea swinglei ソハヤキミズ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/255 (0.0%) | 4/1106 (0.4%) | — |
| VU 絶滅危惧II類 | Balanophora nipponica ミヤマツチトリモチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/25 (4.0%) | 1/44 (2.3%) | — |
| VU 絶滅危惧II類 | Aconogonon ajanense ヒメイワタデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 25 | 2/140 (1.4%) | 13/987 (1.3%) | — |
| VU 絶滅危惧II類 | Persicaria erectominor var. erectominor ヒメタデ | — | — | — | ✓ | — | No | — | — | — | 0 | 3 | 25 | 2/86 (2.3%) | 13/987 (1.3%) | — |
| VU 絶滅危惧II類 | Persicaria foliosa var. nikaii サイコクヌカボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 25 | 2/86 (2.3%) | 13/987 (1.3%) | — |
| VU 絶滅危惧II類 | Persicaria foliosa var. paludicola ヤナギヌカボ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 25 | 2/86 (2.3%) | 13/987 (1.3%) | — |
| VU 絶滅危惧II類 | Persicaria taquetii ヌカボタデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 25 | 2/86 (2.3%) | 13/987 (1.3%) | — |
| VU 絶滅危惧II類 | Rumex dentatus subsp. nipponicus コギシギシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 25 | 2/124 (1.6%) | 13/987 (1.3%) | — |
| VU 絶滅危惧II類 | Rumex gmelinii カラフトノダイオウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 25 | 2/124 (1.6%) | 13/987 (1.3%) | — |
| VU 絶滅危惧II類 | Rumex longifolius ノダイオウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 25 | 2/124 (1.6%) | 13/987 (1.3%) | — |
| VU 絶滅危惧II類 | Montia fontana ヌマハコベ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/16 (0.0%) | 0/285 (0.0%) | — |
| VU 絶滅危惧II類 | Portulaca okinawensis オキナワマツバボタン | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/85 (1.2%) | 1/86 (1.2%) | — |
| VU 絶滅危惧II類 | Arenaria katoana カトウハコベ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 29 | 1/108 (0.9%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Arenaria merckioides var. chokaiensis チョウカイフスマ | — | — | — | — | — | No | — | — | — | 0 | 2 | 29 | 1/108 (0.9%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Cerastium arvense var. ovatum ミツモリミミナグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/118 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Cerastium pauciflorum var. amurense タガソデソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/118 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Cerastium rubescens var. koreanum タカネミミナグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/118 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Moehringia trinervia タチハコベ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 1.24 Gbp 35.0x | 454 10.5 Mbp | 2 | 2 | 29 | 1/29 (3.4%) | 21/2097 (1.0%) | 2024-06-03 |
| VU 絶滅危惧II類 | Pseudostellaria heterantha var. linearifolia ヒナワチガイソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/22 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Pseudostellaria japonica ナンブワチガイソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/22 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Pseudostellaria sylvatica クシロワチガイソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/22 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Silene aomorensis アオモリマンテマ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Silene foliosa エゾマンテマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Silene kiusiana オグラセンノウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Silene sieboldii マツモトセンノウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Silene wilfordii エンビセンノウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Silene yanoei テバコマンテマ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 29 | 7/598 (1.2%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Stellaria bungeana オオハコベ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/162 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Stellaria filicaulis イトハコベ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/162 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Stellaria ruscifolia シコタンハコベ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 29 | 0/162 (0.0%) | 21/2097 (1.0%) | — |
| VU 絶滅危惧II類 | Cassytha pubescens ケスナヅル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/11 (0.0%) | 8/1575 (0.5%) | — |
| VU 絶滅危惧II類 | Cryptocarya chinensis シナクスモドキ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/167 (0.0%) | 8/1575 (0.5%) | — |
| VU 絶滅危惧II類 | Lindera communis var. okinawensis オキナワコウバシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 17 | 0/47 (0.0%) | 8/1575 (0.5%) | — |
| VU 絶滅危惧II類 | Aconitum gassanense ガッサントリカブト | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Aconitum jaluense subsp. iwatekense センウズモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Aconitum mashikense マシケレイジンソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Aconitum nipponicum subsp. micranthum キタザワブシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Aconitum nipponicum subsp. nipponicum var. septemcarpum ミョウコウトリカブト | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Aconitum okuyamae var. wagaense ワガトリカブト | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Aconitum zigzag タカネトリカブト | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/227 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Adonis shikokuensis シコクフクジュソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 18 | 1/25 (4.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Anemone amurensis ウラホロイチゲ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/136 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Anemone dichotoma フタマタイチゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/136 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Callianthemum hondoense キタダケソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/15 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Clematis fusca クロバナハンショウヅル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/232 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Clematis terniflora var. boninensis ムニンセンニンソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/232 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Dichocarpum pterigionocaudatum キバナサバノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/28 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Halerpestes kawakamii ヒメキンポウゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/9 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Pulsatilla cernua オキナグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/31 (0.0%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Ranunculus chinensis コキツネノボタン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Ranunculus ternatus var. ternatus ヒキノカサ | — | — | — | ✓ | — | No | — | — | — | 0 | 4 | 18 | 3/435 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum aquilegiifolium var. daisenense ダイセンカラマツ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum baicalense ハルカラマツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum foetidum var. apoiense アポイカラマツ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum foetidum var. glabrescens チャボカラマツ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum integrilobum ナガバカラマツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum microspermum コゴメカラマツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum sekimotoanum イワカラマツ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum simplex var. brevipes ノカラマツ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum tuberiferum var. yakusimense ヤクシマカラマツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Thalictrum watanabei タマカラマツ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 18 | 1/139 (0.7%) | 11/1915 (0.6%) | — |
| VU 絶滅危惧II類 | Agrimonia coreana チョウセンキンミズヒキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 313 | 0/17 (0.0%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Alchemilla japonica ハゴロモグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 313 | 0/256 (0.0%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Aruncus dioicus var. subrotundus アポイヤマブキショウマ | — | — | — | — | — | No | — | — | — | 0 | 0 | 313 | 0/5 (0.0%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Crataegus jozana エゾサンザシ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 313 | 2/245 (0.8%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Filipendula tsuguwoi シコクシモツケソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 313 | 1/22 (4.5%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Osteomeles anthyllidifolia var. subrotunda テンノウメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 313 | 0/5 (0.0%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Potentilla discolor ツチグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 313 | 2/382 (0.5%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Potentilla fruticosa var. rigida キンロバイ | — | — | — | ✓ | ✓ | No | — | — | — | 1 | 1 | 313 | 1/6 (16.7%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Potentilla miyabei メアカンキンバイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 313 | 2/382 (0.5%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Potentilla niponica ヒロハノカワラサイコ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 313 | 2/382 (0.5%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Potentilla nivea ウラジロキンバイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 313 | 2/382 (0.5%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Pyrus ussuriensis var. hondoensis アオナシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 313 | 5/72 (6.9%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Rosa hirtula サンショウバラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 313 | 11/283 (3.9%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Rubus lambertianus シマバライチゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 313 | 6/748 (0.8%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Rubus pungens var. oldhamii サナギイチゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 313 | 6/748 (0.8%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Spiraea sericea エゾシモツケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 313 | 1/109 (0.9%) | 112/3824 (2.9%) | — |
| VU 絶滅危惧II類 | Epimedium diphyllum subsp. kitamuranum サイコクイカリソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/82 (0.0%) | 2/464 (0.4%) | — |
| VU 絶滅危惧II類 | Epimedium koreanum var. coelestre クモイイカリソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/82 (0.0%) | 2/464 (0.4%) | — |
| VU 絶滅危惧II類 | Euryale ferox オニバス | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/2 (0.0%) | 3/156 (1.9%) | — |
| VU 絶滅危惧II類 | Nuphar oguraensis オグラコウホネ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 4 | 1/22 (4.5%) | 3/156 (1.9%) | — |
| VU 絶滅危惧II類 | Nuphar pumila var. ozeensis オゼコウホネ | — | — | — | ✓ | — | No | — | — | — | 0 | 1 | 4 | 1/22 (4.5%) | 3/156 (1.9%) | — |
| VU 絶滅危惧II類 | Nuphar pumila var. pumila ネムロコウホネ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 4 | 1/22 (4.5%) | 3/156 (1.9%) | — |
| VU 絶滅危惧II類 | Nuphar subintegerrima ヒメコウホネ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 4 | 1/22 (4.5%) | 3/156 (1.9%) | — |
| VU 絶滅危惧II類 | Nymphaea tetragona var. erythrostigmatica エゾベニヒツジグサ | — | — | — | — | — | No | — | — | — | 0 | 3 | 4 | 2/115 (1.7%) | 3/156 (1.9%) | — |
| VU 絶滅危惧II類 | Peperomia boninsimensis シマゴショウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/383 (0.0%) | 2/1101 (0.2%) | — |
| VU 絶滅危惧II類 | Chloranthus fortunei キビヒトリシズカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 2 | 1/16 (6.2%) | 2/74 (2.7%) | — |
| VU 絶滅危惧II類 | Aristolochia contorta マルバウマノスズクサ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 211 Mbp 183.0x | 224 2.32 Mbp | 1 | 4 | 4 | 3/228 (1.3%) | 3/263 (1.1%) | 2022-03-04 |
| VU 絶滅危惧II類 | Aristolochia zollingeriana コウシュンウマノスズクサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 4 | 3/228 (1.3%) | 3/263 (1.1%) | — |
| VU 絶滅危惧II類 | Asarum crassum ナンゴクアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum fauriei var. austrokiiensis (in schedule) キナンカンアオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum fauriei var. fauriei ミチノクサイシン | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum fauriei var. nakaianum ミヤマアオイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum fudsinoi フジノカンアオイ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum hexalobum var. perfectum キンチャクアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum kiusianum var. kiusianum ツクシアオイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum kiusianum var. tubulosum アケボノアオイ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum kumageanum var. kumageanum クワイバカンアオイ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum kurosawae イワタカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum muramatsui var. muramatsui アマギカンアオイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum nipponicum var. nankaiense ナンカイアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum sakawanum var. sakawanum サカワサイシン | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum simile トクノシマカンアオイ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum tamaense タマノカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum unzen ウンゼンカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Asarum yakusimense オニカンアオイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/163 (0.0%) | 0/164 (0.0%) | — |
| VU 絶滅危惧II類 | Paeonia obovata ベニバナヤマシャクヤク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/65 (1.5%) | 1/65 (1.5%) | — |
| VU 絶滅危惧II類 | Eurya minutissima マメヒサカキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/73 (0.0%) | 1/227 (0.4%) | — |
| VU 絶滅危惧II類 | Hypericum ascyron var. longistylum コウライトモエソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 8 | 4/361 (1.1%) | 4/432 (0.9%) | — |
| VU 絶滅危惧II類 | Hypericum yezoense エゾオトギリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 8 | 4/361 (1.1%) | 4/432 (0.9%) | — |
| VU 絶滅危惧II類 | Hypericum yojiroanum ダイセツヒナオトギリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 8 | 4/361 (1.1%) | 4/432 (0.9%) | — |
| VU 絶滅危惧II類 | Drosera anglica ナガバノモウセンゴケ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 3 | 4 | 3/91 (3.3%) | 4/93 (4.3%) | — |
| VU 絶滅危惧II類 | Drosera indica ナガバノイシモチソウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/91 (3.3%) | 4/93 (4.3%) | — |
| VU 絶滅危惧II類 | Corydalis kushiroensis チドリケマン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 15 | 1/228 (0.4%) | 11/578 (1.9%) | — |
| VU 絶滅危惧II類 | Arabis flagellosa var. kawachiensis カワチスズシロソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 537 | 5/103 (4.9%) | 108/3414 (3.2%) | — |
| VU 絶滅危惧II類 | Arabis tanakana クモイナズナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 537 | 5/103 (4.9%) | 108/3414 (3.2%) | — |
| VU 絶滅危惧II類 | Cardamine kiusiana タカチホガラシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 537 | 6/220 (2.7%) | 108/3414 (3.2%) | — |
| VU 絶滅危惧II類 | Cardamine schinziana エゾノジャニンジン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 537 | 6/220 (2.7%) | 108/3414 (3.2%) | — |
| VU 絶滅危惧II類 | Cochlearia oblongifolia トモシリソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 537 | 3/21 (14.3%) | 108/3414 (3.2%) | — |
| VU 絶滅危惧II類 | Draba nipponica クモマナズナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 537 | 2/331 (0.6%) | 108/3414 (3.2%) | — |
| VU 絶滅危惧II類 | Rorippa globosa ミギワガラシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 537 | 0/67 (0.0%) | 108/3414 (3.2%) | — |
| VU 絶滅危惧II類 | Hylotelephium cauticola f. cauticola ヒダカミセバヤ | — | — | — | — | — | No | — | — | — | 0 | 0 | 7 | 0/26 (0.0%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Hylotelephium pallescens ムラサキベンケイソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/26 (0.0%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Hylotelephium sieboldii var. ettyuense エッチュウミセバヤ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/26 (0.0%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Hylotelephium ussuriense var. tsugaruense ツガルミセバヤ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/26 (0.0%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Meterostachys sikokianus チャボツメレンゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Orostachys malacophylla var. boehmeri コモチレンゲ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/20 (0.0%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Orostachys malacophylla var. iwarenge イワレンゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/20 (0.0%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Orostachys malacophylla var. malacophylla ゲンカイイワレンゲ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 7 | 0/20 (0.0%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Sedum hakonense マツノハマンネングサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/255 (0.4%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Sedum polytrichoides ウンゼンマンネングサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/255 (0.4%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Sedum tosaense ヤハズマンネングサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/255 (0.4%) | 6/1210 (0.5%) | — |
| VU 絶滅危惧II類 | Astilbe rubra オオチダケサシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/31 (0.0%) | 3/831 (0.4%) | — |
| VU 絶滅危惧II類 | Cardiandra moellendorffii オオクサアジサイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 1/136 (0.7%) | 1/262 (0.4%) | — |
| VU 絶滅危惧II類 | Kirengeshoma palmata キレンゲショウマ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/3 (0.0%) | 1/262 (0.4%) | — |
| VU 絶滅危惧II類 | Mitella nuda マルバチャルメルソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/5 (0.0%) | 3/831 (0.4%) | — |
| VU 絶滅危惧II類 | Peltoboykinia watanabei ワタナベソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/2 (0.0%) | 3/831 (0.4%) | — |
| VU 絶滅危惧II類 | Saxifraga acerifolia エチゼンダイモンジソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 3 | 1/503 (0.2%) | 3/831 (0.4%) | — |
| VU 絶滅危惧II類 | Deutzia uniflora ウメウツギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/74 (0.0%) | 1/262 (0.4%) | — |
| VU 絶滅危惧II類 | Deutzia zentaroana ブンゴウツギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/74 (0.0%) | 1/262 (0.4%) | — |
| VU 絶滅危惧II類 | Hydrangea liukiuensis リュウキュウコンテリギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 1/136 (0.7%) | 1/262 (0.4%) | — |
| VU 絶滅危惧II類 | Hydrangea serrata var. minamitanii ヒュウガアジサイ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 1/136 (0.7%) | 1/262 (0.4%) | — |
| VU 絶滅危惧II類 | Ribes triste トカチスグリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 1/139 (0.7%) | 1/139 (0.7%) | — |
| VU 絶滅危惧II類 | Pittosporum beecheyi ハハジマトベラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/111 (0.9%) | 1/137 (0.7%) | — |
| VU 絶滅危惧II類 | Astragalus frigidus subsp. parviflorus リシリオウギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 6 | 328 | 3/1607 (0.2%) | 143/16133 (0.9%) | — |
| VU 絶滅危惧II類 | Glycine koidzumii ミヤコジマツルマメ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 43 | 328 | 4/50 (8.0%) | 143/16133 (0.9%) | — |
| VU 絶滅危惧II類 | Lespedeza maximowiczii チョウセンキハギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/65 (1.5%) | 143/16133 (0.9%) | — |
| VU 絶滅危惧II類 | Lespedeza melanantha クロバナキハギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/65 (1.5%) | 143/16133 (0.9%) | — |
| VU 絶滅危惧II類 | Lespedeza tomentosa イヌハギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/65 (1.5%) | 143/16133 (0.9%) | — |
| VU 絶滅危惧II類 | Oxytropis retusa ヒダカミヤマノエンドウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 328 | 1/267 (0.4%) | 143/16133 (0.9%) | — |
| VU 絶滅危惧II類 | Vigna adenantha コチョウインゲン | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 328 | 0/2 (0.0%) | 143/16133 (0.9%) | — |
| VU 絶滅危惧II類 | Hydrobryum floribundum ウスカワゴロモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/41 (0.0%) | 0/404 (0.0%) | — |
| VU 絶滅危惧II類 | Hydrobryum japonicum カワゴロモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/41 (0.0%) | 0/404 (0.0%) | — |
| VU 絶滅危惧II類 | Oxalis obtriangulata オオヤマカタバミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/433 (0.2%) | 1/457 (0.2%) | — |
| VU 絶滅危惧II類 | Geranium shikokianum var. kaimontanum カイフウロ | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 9 | 33 | 8/185 (4.3%) | 28/531 (5.3%) | — |
| VU 絶滅危惧II類 | Geranium soboliferum var. kiusianum ツクシフウロ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 33 | 8/185 (4.3%) | 28/531 (5.3%) | — |
| VU 絶滅危惧II類 | Chamaesyce sparrmannii ボロジノニシキソウ | — | — | — | ✓ | — | No | — | — | — | 0 | 6 | 81 | / | 46/3652 (1.3%) | — |
| VU 絶滅危惧II類 | Drypetes integerrima ハツバキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/61 (0.0%) | 0/66 (0.0%) | — |
| VU 絶滅危惧II類 | Euphorbia watanabei subsp. watanabei フジタイゲキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 81 | 15/1294 (1.2%) | 46/3652 (1.3%) | — |
| VU 絶滅危惧II類 | Excoecaria formosana var. daitoinsularis ダイトウセイシボク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 81 | 2/19 (10.5%) | 46/3652 (1.3%) | — |
| VU 絶滅危惧II類 | Melicope nishimurae ムニンゴシュユ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 95 | 0/145 (0.0%) | 36/1482 (2.4%) | — |
| VU 絶滅危惧II類 | Zanthoxylum yakumontanum ヤクシマカラスザンショウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 95 | 3/164 (1.8%) | 36/1482 (2.4%) | — |
| VU 絶滅危惧II類 | Acer miyabei var. miyabei クロビイタヤ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 20 | 4/171 (2.3%) | 11/1121 (1.0%) | — |
| VU 絶滅危惧II類 | Acer oblongum subsp. itoanum クスノハカエデ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 7 | 20 | 4/171 (2.3%) | 11/1121 (1.0%) | — |
| VU 絶滅危惧II類 | Acer pycnanthum ハナノキ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 20 | 4/171 (2.3%) | 11/1121 (1.0%) | — |
| VU 絶滅危惧II類 | Meliosma arnottiana subsp. oldhamii var. hachijoensis サクノキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/74 (0.0%) | 0/100 (0.0%) | — |
| VU 絶滅危惧II類 | Ilex matanoana ムニンイヌツゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 5 | 3/343 (0.9%) | 3/347 (0.9%) | — |
| VU 絶滅危惧II類 | Euonymus boninensis ヒメマサキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 1/92 (1.1%) | 2/735 (0.3%) | — |
| VU 絶滅危惧II類 | Euonymus fortunei var. austroliukiuensis (in schedule) リュウキュウツルマサキ | — | — | — | — | — | No | — | — | — | 0 | 2 | 4 | 1/92 (1.1%) | 2/735 (0.3%) | — |
| VU 絶滅危惧II類 | Euonymus yakushimensis アオツリバナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 1/92 (1.1%) | 2/735 (0.3%) | — |
| VU 絶滅危惧II類 | Tripterygium doianum コバノクロヅル | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 4 | 1/6 (16.7%) | 2/735 (0.3%) | — |
| VU 絶滅危惧II類 | Buxus liukiuensis オキナワツゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 1/105 (1.0%) | 2/141 (1.4%) | — |
| VU 絶滅危惧II類 | Paliurus ramosissimus ハマナツメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/9 (0.0%) | 6/930 (0.6%) | — |
| VU 絶滅危惧II類 | Rhamnella franguloides var. inaequilatera ヤエヤマネコノチチ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 18 | 1/12 (8.3%) | 6/930 (0.6%) | — |
| VU 絶滅危惧II類 | Rhamnus yoshinoi キビノクロウメモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 18 | 0/120 (0.0%) | 6/930 (0.6%) | — |
| VU 絶滅危惧II類 | Daphne koreana チョウセンナニワズ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/53 (1.9%) | 6/559 (1.1%) | — |
| VU 絶滅危惧II類 | Daphnimorpha kudoi シャクナンガンピ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/2 (0.0%) | 6/559 (1.1%) | — |
| VU 絶滅危惧II類 | Diplomorpha albiflora ミヤマガンピ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/4 (0.0%) | 6/559 (1.1%) | — |
| VU 絶滅危惧II類 | Diplomorpha pauciflora サクラガンピ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/4 (0.0%) | 6/559 (1.1%) | — |
| VU 絶滅危惧II類 | Elaeagnus matsunoana ハコネグミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 6 | 2/77 (2.6%) | 6/92 (6.5%) | — |
| VU 絶滅危惧II類 | Viola grayi イソスミレ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| VU 絶滅危惧II類 | Viola hultenii チシマウスバスミレ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| VU 絶滅危惧II類 | Viola patrinii var. angustifolia ホソバシロスミレ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| VU 絶滅危惧II類 | Viola raddeana タチスミレ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| VU 絶滅危惧II類 | Viola sacchalinensis f. alpina アポイタチツボスミレ | — | — | — | — | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| VU 絶滅危惧II類 | Viola yubariana シソバキスミレ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/409 (0.5%) | 2/646 (0.3%) | — |
| VU 絶滅危惧II類 | Begonia fenicis コウトウシュウカイドウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 6/1035 (0.6%) | 6/1036 (0.6%) | — |
| VU 絶滅危惧II類 | Rotala mexicana ミズマツバ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 21 | 0/20 (0.0%) | 9/405 (2.2%) | — |
| VU 絶滅危惧II類 | Rotala rosea ミズキカシグサ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 21 | 0/20 (0.0%) | 9/405 (2.2%) | — |
| VU 絶滅危惧II類 | Trapa incisa ヒメビシ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 473 Mbp 43.2x | 262 13.8 Mbp | 2 | 4 | 21 | 3/24 (12.5%) | 9/405 (2.2%) | 2023-05-24 |
| VU 絶滅危惧II類 | Syzygium cleyerifolium ヒメフトモモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 78 | 7/453 (1.5%) | 62/2958 (2.1%) | — |
| VU 絶滅危惧II類 | Blastus cochinchinensis ミヤマハシカンボク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/13 (0.0%) | 4/3318 (0.1%) | — |
| VU 絶滅危惧II類 | Bredia okinawensis コバノミヤマノボタン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/9 (0.0%) | 4/3318 (0.1%) | — |
| VU 絶滅危惧II類 | Melastoma candidum var. alessandrense イオウノボタン | — | ✓ | — | ✓ | ✓ | No | — | — | — | 2 | 5 | 5 | 4/60 (6.7%) | 4/3318 (0.1%) | — |
| VU 絶滅危惧II類 | Osbeckia chinensis ヒメノボタン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/15 (0.0%) | 4/3318 (0.1%) | — |
| VU 絶滅危惧II類 | Circaea lutetiana subsp. quadrisulcata エゾミズタマソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/10 (0.0%) | 4/472 (0.8%) | — |
| VU 絶滅危惧II類 | Epilobium hirsutum オオアカバナ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 336 Mbp 58.0x | 1,096 633 kbp | 2 | 2 | 6 | 1/112 (0.9%) | 4/472 (0.8%) | 2025-02-21 |
| VU 絶滅危惧II類 | Epilobium platystigmatosum トダイアカバナ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 6 | 1/112 (0.9%) | 4/472 (0.8%) | — |
| VU 絶滅危惧II類 | Ludwigia adscendens ケミズキンバイ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/65 (0.0%) | 4/472 (0.8%) | — |
| VU 絶滅危惧II類 | Ludwigia peploides subsp. stipulacea ミズキンバイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/65 (0.0%) | 4/472 (0.8%) | — |
| VU 絶滅危惧II類 | Myriophyllum oguraense オグラノフサモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 3 | 2/70 (2.9%) | 2/143 (1.4%) | — |
| VU 絶滅危惧II類 | Hippuris tetraphylla ヒロハスギナモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/4 (0.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Fatsia oligocarpella ムニンヤツデ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/3 (0.0%) | 9/960 (0.9%) | — |
| VU 絶滅危惧II類 | Angelica boninensis ムニンハマウド | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Angelica pseudoshikokiana ツクシトウキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Angelica shikokiana var. shikokiana イヌトウキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Angelica stenoloba ホソバトウキ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Angelica tenuisecta var. furcijuga ヒュウガトウキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Angelica tenuisecta var. tenuisecta カワゼンゴ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Angelica yakusimensis ヤクシマノダケ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Angelica yoshinagae トサボウフウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/110 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Bupleurum scorzonerifolium var. stenophyllum ミシマサイコ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/98 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Pterygopleurum neurophyllum シムラニンジン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/1 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Sanicula tuberculata フキヤミツバ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 19 | 2/47 (4.3%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Sium suave var. nipponicum ヌマゼリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/15 (0.0%) | 14/3098 (0.5%) | — |
| VU 絶滅危惧II類 | Pyrola faurieana カラフトイチヤクソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 53 | 0/31 (0.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Bryanthus gmelinii チシマツガザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 53 | 0/2 (0.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Menziesia lasiophylla ムラサキツリガネツツジ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 53 | 0/1 (0.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Menziesia purpurea ヨウラクツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron dauricum エゾムラサキツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron japonoheptamerum var. kyomaruense キョウマルシャクナゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron komiyamae アシタカツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron lapponicum subsp. parvifolium サカイツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron makinoi ホソバシャクナゲ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron mayebarae var. mayebarae ナンゴクミツバツツジ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron nudipes var. kirishimense キリシマミツバツツジ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron osuzuyamense ウラジロミツバツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron sanctum var. lasiogynum シブカワツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron sanctum var. sanctum ジングウツツジ | — | — | — | — | — | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron scabrum ケラマツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron tsusiophyllum ハコネコメツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron yakuinsulare ヤクシマヤマツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Rhododendron yakumontanum ヤクシマミツバツツジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 22 | 53 | 16/791 (2.0%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Vaccinium boninense ムニンシャシャンボ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 17 | 53 | 9/230 (3.9%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Vaccinium microcarpum ヒメツルコケモモ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 17 | 53 | 9/230 (3.9%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Vaccinium yakushimense アクシバモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 17 | 53 | 9/230 (3.9%) | 34/3016 (1.1%) | — |
| VU 絶滅危惧II類 | Ardisia chinensis シナヤブコウジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/243 (0.0%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Myrsine maximowiczii シマタイミンタチバナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/88 (0.0%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Lysimachia barystachys ノジトラノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/162 (0.0%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Primula cuneifolia var. heterodonta ミチノクコザクラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Primula hidakana var. hidakana ヒダカイワザクラ | — | — | — | ✓ | — | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Primula kisoana var. shikokiana シコクカッコソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Primula modesta var. matsumurae レブンコザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Primula reinii var. kitadakensis クモイコザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Primula reinii var. reinii コイワザクラ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Primula sorachiana ソラチコザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Primula takedana テシオコザクラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 7 | 12 | 2/373 (0.5%) | 5/1484 (0.3%) | — |
| VU 絶滅危惧II類 | Limonium wrightii var. luteum キバナイソマツ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/294 (0.3%) | 1/627 (0.2%) | — |
| VU 絶滅危惧II類 | Limonium wrightii var. wrightii イソマツ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 1 | 1 | 1/294 (0.3%) | 1/627 (0.2%) | — |
| VU 絶滅危惧II類 | Planchonella obovata var. dubia コバノアカテツ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/121 (0.0%) | 4/1042 (0.4%) | — |
| VU 絶滅危惧II類 | Styrax japonica var. tomentosa オオバケエゴノキ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/90 (0.0%) | 0/124 (0.0%) | — |
| VU 絶滅危惧II類 | Symplocos sonoharae ミヤマシロバイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/209 (0.5%) | 1/210 (0.5%) | — |
| VU 絶滅危惧II類 | Chionanthus retusus ヒトツバタゴ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 62 | 0/51 (0.0%) | 40/595 (6.7%) | — |
| VU 絶滅危惧II類 | Jasminum sinense オキナワソケイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/112 (0.9%) | 40/595 (6.7%) | — |
| VU 絶滅危惧II類 | Osmanthus enervius ナンゴクモクセイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 62 | 1/42 (2.4%) | 40/595 (6.7%) | — |
| VU 絶滅危惧II類 | Gardneria multiflora チトセカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/4 (0.0%) | 0/254 (0.0%) | — |
| VU 絶滅危惧II類 | Geniostoma glabrum オガサワラモクレイシ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/11 (0.0%) | 0/254 (0.0%) | — |
| VU 絶滅危惧II類 | Mitrasacme indica ヒメナエ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/19 (0.0%) | 0/254 (0.0%) | — |
| VU 絶滅危惧II類 | Gentiana jamesii var. jamesii リシリリンドウ | — | — | — | — | — | No | — | — | — | 0 | 3 | 4 | 3/280 (1.1%) | 4/1131 (0.4%) | — |
| VU 絶滅危惧II類 | Gentiana jamesii var. robusta イイデリンドウ | — | — | — | — | — | No | — | — | — | 0 | 3 | 4 | 3/280 (1.1%) | 4/1131 (0.4%) | — |
| VU 絶滅危惧II類 | Gentiana satsunanensis リュウキュウコケリンドウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 4 | 3/280 (1.1%) | 4/1131 (0.4%) | — |
| VU 絶滅危惧II類 | Pterygocalyx volubilis ホソバツルリンドウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/1 (0.0%) | 4/1131 (0.4%) | — |
| VU 絶滅危惧II類 | Swertia makinoana シマアケボノソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/96 (0.0%) | 4/1131 (0.4%) | — |
| VU 絶滅危惧II類 | Swertia noguchiana ソナレセンブリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/96 (0.0%) | 4/1131 (0.4%) | — |
| VU 絶滅危惧II類 | Swertia swertopsis シノノメソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/96 (0.0%) | 4/1131 (0.4%) | — |
| VU 絶滅危惧II類 | Swertia tosaensis イヌセンブリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 4 | 0/96 (0.0%) | 4/1131 (0.4%) | — |
| VU 絶滅危惧II類 | Nymphoides coreana ヒメシロアサザ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/40 (0.0%) | 0/62 (0.0%) | — |
| VU 絶滅危惧II類 | Apocynum venetum var. basikurumon バシクルモン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 2 | 24 | 2/9 (22.2%) | 18/3270 (0.6%) | — |
| VU 絶滅危惧II類 | Vincetoxicum amplexicaule ロクオンソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| VU 絶滅危惧II類 | Vincetoxicum atratum フナバラソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| VU 絶滅危惧II類 | Vincetoxicum calcareum イシダテクサタチバナ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| VU 絶滅危惧II類 | Vincetoxicum hoyoense ホウヨカモメヅル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| VU 絶滅危惧II類 | Vincetoxicum izuense イズカモメヅル | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| VU 絶滅危惧II類 | Vincetoxicum katoi クサナギオゴケ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| VU 絶滅危惧II類 | Vincetoxicum yamanakae ヤマワキオゴケ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 24 | 0/140 (0.0%) | 18/3270 (0.6%) | — |
| VU 絶滅危惧II類 | Galium boreale var. kamtschaticum エゾキヌタソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 39 | 4/268 (1.5%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Galium manshuricum エゾムグラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 39 | 4/268 (1.5%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Galium niewerthii ヤブムグラ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 39 | 4/268 (1.5%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Galium pogonanthum var. yakumontanum ヤクシマヤマムグラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 39 | 4/268 (1.5%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Galium tokyoense ハナムグラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 39 | 4/268 (1.5%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Gardenia boninensis オガサワラクチナシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 39 | 1/68 (1.5%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Hedyotis hookeri マルバシマザクラ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/148 (0.0%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Hedyotis verticillata ヒロハケニオイグサ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/148 (0.0%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Morinda citrifolia ヤエヤマアオキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/33 (0.0%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Psychotria homalosperma オガサワラボチョウジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/527 (0.0%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Tarenna subsessilis シマギョクシンカ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 39 | 0/57 (0.0%) | 28/6178 (0.5%) | — |
| VU 絶滅危惧II類 | Polemonium caeruleum subsp. laxiflorum var. paludosum クシロハナシノブ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/31 (0.0%) | 1/420 (0.2%) | — |
| VU 絶滅危惧II類 | Polemonium caeruleum subsp. yezoense var. nipponicum ミヤマハナシノブ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/31 (0.0%) | 1/420 (0.2%) | — |
| VU 絶滅危惧II類 | Polemonium caeruleum subsp. yezoense var. yezoense エゾハナシノブ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/31 (0.0%) | 1/420 (0.2%) | — |
| VU 絶滅危惧II類 | Cuscuta chinensis ハマネナシカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 17 | 4/192 (2.1%) | 11/1194 (0.9%) | — |
| VU 絶滅危惧II類 | Trigonotis radicans var. radicans ケルリソウ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 7 | 0/37 (0.0%) | 4/1307 (0.3%) | — |
| VU 絶滅危惧II類 | Avicennia marina ヒルギダマシ | LC | ✓ | ✓ | ✓ | ✓ | Yes (5) | Chromosome, Reference | 457 Mbp 248.0x | 331 3.01 Mbp | 5 | 5 | 9 | 1/9 (11.1%) | 4/1915 (0.2%) | 2020-03-09 |
| VU 絶滅危惧II類 | Callicarpa kochiana ビロードムラサキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/74 (0.0%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Callicarpa oshimensis var. okinawensis オキナワヤブムラサキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/74 (0.0%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Callicarpa shikokiana トサムラサキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/74 (0.0%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Caryopteris incana ダンギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 67 | 1/9 (11.1%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Callitriche hermaphroditica チシマミズハコベ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 44 | 1/48 (2.1%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Ajuga ciliata var. villosior カイジンドウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 67 | 2/43 (4.7%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Ajuga shikotanensis ツルカコソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 67 | 2/43 (4.7%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Dracocephalum argunense ムシャリンドウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 67 | 1/73 (1.4%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Lamium tuberiferum ヒメキセワタ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 67 | 2/27 (7.4%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Leonurus macranthus キセワタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 67 | 1/10 (10.0%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Meehania montis-koyae オチフジ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/9 (0.0%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Mosla chinensis ホソバヤマジソ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/12 (0.0%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Pogostemon yatabeanus ミズトラノオ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 67 | 1/47 (2.1%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Salvia isensis シマジタムラソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 67 | 8/724 (1.1%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Salvia koyamae シナノアキギリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 67 | 8/724 (1.1%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Salvia omerocalyx タジマタムラソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 14 | 67 | 8/724 (1.1%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Scutellaria guilielmii コナミキ | — | ✓ | — | — | — | No | — | — | — | 0 | 6 | 67 | 4/277 (1.4%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Scutellaria kuromidakensis ヤクシマシソバタツナミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 67 | 4/277 (1.4%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Scutellaria yezoensis エゾナミキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 67 | 4/277 (1.4%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Suzukia luchuensis ヤエヤマスズコウジュ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 67 | 0/2 (0.0%) | 44/4334 (1.0%) | — |
| VU 絶滅危惧II類 | Physaliastrum japonicum アオホオズキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 283 | 1/23 (4.3%) | 91/2447 (3.7%) | — |
| VU 絶滅危惧II類 | Centranthera cochinchinensis subsp. lutea ゴマクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/2 (0.0%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Deinostema adenocaulum マルバノサワトウガラシ | — | — | — | — | — | No | — | — | — | 0 | 0 | 44 | 0/1 (0.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Euphrasia hachijoensis ハチジョウコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Euphrasia insignis subsp. iinumae var. iinumae イブキコゴメグサ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Euphrasia insignis subsp. insignis var. nummularia マルバコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Euphrasia kisoalpina コケコゴメグサ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Euphrasia microphylla ナヨナヨコゴメグサ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 13 | 2/110 (1.8%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Gratiola japonica オオアブノメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/18 (0.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Limnophila indica コキクモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/10 (0.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Limosella aquatica キタミソウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/11 (0.0%) | 3/1031 (0.3%) | — |
| VU 絶滅危惧II類 | Melampyrum laxum var. arcuatum タカネママコナ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 13 | 1/19 (5.3%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Microcarpaea minima スズメハコベ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/1 (0.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Pedicularis ochiaiana ヤクシマシオガマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/421 (0.0%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Pedicularis resupinata subsp. oppositifolia var. microphylla ミカワシオガマ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 13 | 0/421 (0.0%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Pedicularis schistostegia ネムロシオガマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/421 (0.0%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Pedicularis spicata ホザキシオガマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/421 (0.0%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Scrophularia buergeriana ゴマノハグサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/210 (0.0%) | 3/1031 (0.3%) | — |
| VU 絶滅危惧II類 | Siphonostegia laeta オオヒキヨモギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 13 | 0/3 (0.0%) | 10/1409 (0.7%) | — |
| VU 絶滅危惧II類 | Veronica javanica ハマクワガタ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica kiusiana var. kitadakemontana キタダケトラノオ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica kiusiana var. kiusiana ツクシトラノオ | — | — | — | — | — | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica ogurae サンイントラノオ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica onoei グンバイヅル | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica ornata トウテイラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica polita subsp. lilacina イヌノフグリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica schmidtiana subsp. senanensis var. yezoalpina エゾミヤマクワガタ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica sieboldiana ハマトラノオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica stelleri var. longistyla エゾヒメクワガタ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronica subsessilis ルリトラノオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 44 | 4/384 (1.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronicastrum japonicum var. australe ナンゴククガイソウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/16 (0.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronicastrum sibiricum var. zuccarinii ツクシクガイソウ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/16 (0.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Veronicastrum tagawae キノクニスズカケ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 44 | 0/16 (0.0%) | 35/1677 (2.1%) | — |
| VU 絶滅危惧II類 | Lysionotus pauciflorus シシンラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/35 (0.0%) | 6/2399 (0.3%) | — |
| VU 絶滅危惧II類 | Opithandra primuloides イワギリソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/128 (0.0%) | 6/2399 (0.3%) | — |
| VU 絶滅危惧II類 | Orobanche coerulescens ハマウツボ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 3.65 Gbp 97.0x | 2,775 8.30 Mbp | 1 | 1 | 13 | 1/87 (1.1%) | 10/1409 (0.7%) | 2023-11-07 |
| VU 絶滅危惧II類 | Pinguicula ramosa コウシンソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/107 (1.9%) | 5/348 (1.4%) | — |
| VU 絶滅危惧II類 | Utricularia aurea ノタヌキモ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/210 (1.0%) | 5/348 (1.4%) | — |
| VU 絶滅危惧II類 | Utricularia exoleta ミカワタヌキモ | LC | ✓ | — | ✓ | ✓ | No | — | — | — | 1 | 2 | 5 | 2/210 (1.0%) | 5/348 (1.4%) | — |
| VU 絶滅危惧II類 | Utricularia ochroleuca ヤチコタヌキモ | LC | ✓ | — | ✓ | — | No | — | — | — | 0 | 2 | 5 | 2/210 (1.0%) | 5/348 (1.4%) | — |
| VU 絶滅危惧II類 | Myoporum bontioides ハマジンチョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 6 | 0/28 (0.0%) | 3/1031 (0.3%) | — |
| VU 絶滅危惧II類 | Lonicera alpigena subsp. glehnii var. glehnii エゾヒョウタンボク | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Lonicera cerasina ウスバヒョウタンボク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Lonicera chamissoi チシマヒョウタンボク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Lonicera chrysantha var. crassipes ネムロブシダマ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Lonicera maackii ハナヒョウタンボク | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 793 Mbp 110.0x | 233,951 10.6 kbp | 1 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | 2022-05-20 |
| VU 絶滅危惧II類 | Lonicera sachalinensis ベニバナヒョウタンボク | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Lonicera vidalii オニヒョウタンボク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 3 | 2/172 (1.2%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Triosteum sinuatum ツキヌキソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/9 (0.0%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Viburnum brachyandrum シマガマズミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/175 (0.0%) | 1/206 (0.5%) | — |
| VU 絶滅危惧II類 | Viburnum tashiroi オオシマガマズミ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/175 (0.0%) | 1/206 (0.5%) | — |
| VU 絶滅危惧II類 | Zabelia integrifolia イワツクバネウツギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/11 (0.0%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Scabiosa japonica var. lasiophylla ソナレマツムシソウ | — | ✓ | — | — | — | No | — | — | — | 0 | 1 | 3 | 1/35 (2.9%) | 3/682 (0.4%) | — |
| VU 絶滅危惧II類 | Adenophora maximowicziana ヒナシャジン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| VU 絶滅危惧II類 | Adenophora nikoensis var. teramotoi シライワシャジン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| VU 絶滅危惧II類 | Adenophora uryuensis シラトリシャジン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/67 (1.5%) | 8/1490 (0.5%) | — |
| VU 絶滅危惧II類 | Campanumoea javanica var. japonica ツルギキョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 10 | 2/45 (4.4%) | 8/1490 (0.5%) | — |
| VU 絶滅危惧II類 | Codonopsis ussuriensis バアソブ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 10 | 2/45 (4.4%) | 8/1490 (0.5%) | — |
| VU 絶滅危惧II類 | Lobelia boninensis オオハマギキョウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/188 (0.5%) | 8/1490 (0.5%) | — |
| VU 絶滅危惧II類 | Platycodon grandiflorus キキョウ | — | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 575 Mbp 49.1x | 1,175 1.52 Mbp | 2 | 2 | 10 | 1/1 (100.0%) | 8/1490 (0.5%) | 2019-04-05 |
| VU 絶滅危惧II類 | Achillea alpina subsp. japonica キタノコギリソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/82 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ainsliaea fragrans マルバテイショウソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/41 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ainsliaea oblonga var. oblonga ナガバハグマ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 141 | 0/41 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Anaphalis sinica var. pernivea トダイハハコ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/74 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Anaphalis sinica var. viscosissima クリヤマハハコ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/74 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Artemisia congesta オニオトコヨモギ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Artemisia glomerata ハハコヨモギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Artemisia rubripes ヤブヨモギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Artemisia sacrorum イワヨモギ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Artemisia tanacetifolia シコタンヨモギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 12 | 141 | 6/467 (1.3%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Aster hispidus var. leptocladus ヤナギノギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Aster kantoensis カワラノギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Aster koshikiensis コシキギク | — | ✓ | ✓ | — | — | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Aster maackii ヒゴシオン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Aster miyagii オキナワギク | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Aster sohayakiensis ホソバノギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Aster tataricus シオン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/158 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Bidens cernua ヤナギタウコギ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 1/121 (0.8%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Carpesium faberi コバナガンクビソウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/24 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Chrysanthemum arcticum subsp. yezoense チシマコハマギク | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/1 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Chrysanthemum crassum オオシマノジギク | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 141 | 3/46 (6.5%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Chrysanthemum pallasianum オオイワインチン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/28 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Chrysanthemum weyrichii ピレオギク | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 141 | 3/46 (6.5%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Chrysanthemum zawadskii var. zawadskii イワギク | — | — | — | ✓ | — | No | — | — | — | 0 | 4 | 141 | 3/46 (6.5%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Cirsium confertissimum コイブキアザミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Cirsium homolepis オゼヌマアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Cirsium horiianum オガアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Cirsium magofukui イナベアザミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Cirsium nipponicum var. sadoense サドアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Cirsium sieboldii subsp. austrokiushianum サツママアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Cirsium tashiroi var. hidaense ヒダアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Cirsium tashiroi var. tashiroi ワタムキアザミ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 141 | 0/203 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Conyza japonica イズハハコ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 141 | 1/30 (3.3%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Crepidiastrum chelidoniifolium クサノオウバノギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/4 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Crepidiastrum linguifolium ヘラナレン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Crepis gymnopus エゾタカネニガナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/112 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Crossostephium chinense モクビャクコウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/1 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Dendrocacalia crepidifolia ワダンノキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/1 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Echinops setifer ヒゴタイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/150 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Erigeron acer var. linearifolius ホソバムカシヨモギ | — | — | — | ✓ | — | No | — | — | — | 0 | 4 | 141 | 3/186 (1.6%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Eupatorium lindleyanum var. yasushii ハマサワヒヨドリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/46 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Eupatorium yakushimense ヤクシマヒヨドリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/46 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Inula linariifolia ホソバオグルマ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/56 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ixeridium dentatum subsp. kitayamense ドロニガナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ixeridium dentatum subsp. nipponicum イソニガナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ixeridium laevigatum ヤナギニガナ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ixeridium yakuinsulare コスギニガナ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/13 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ixeris chinensis subsp. strigosa タカサゴソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/8 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ixeris longirostra ツルワダン | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 141 | 0/8 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Leontopodium fauriei var. angustifolium ホソバヒナウスユキソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/48 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Leontopodium japonicum var. perniveum カワラウスユキソウ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/48 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Leontopodium miyabeanum オオヒラウスユキソウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 141 | 0/48 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Leucanthemella linearis ミコシギク | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/2 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Ligularia sibirica アソタカラコウ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/97 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Parasenecio amagiensis イズカニコウモリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/3 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Parasenecio ogamontanus オガコウモリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 141 | 0/52 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Parasenecio shikokianus ヒメコウモリソウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 141 | 0/52 (0.0%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Saussurea acuminata var. sachalinensis カラフトアザミ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Saussurea chionophylla ユキバヒゴタイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Saussurea fauriei フォーリーアザミ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Saussurea franchetii ミヤマキタアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Saussurea inaensis イナトウヒレン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Saussurea kudoana ヒダカトウヒレン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Saussurea modesta ネコヤマヒゴタイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 141 | 2/363 (0.6%) | 84/16157 (0.5%) | — |
| VU 絶滅危惧II類 | Saussurea pulchella ヒメヒゴタイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | |||||||