Genome sequence data availability
for the Japanese Red List
Updated on 2026-01-05
This page shows only entries from the "Birds" Red List section. This table is also available in TSV format.
This page shows only entries from the "Birds" Red List section. This table is also available in TSV format.
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Tadorna cristata カンムリツクシガモ | CR | ✓ | ✓ | ✓ | ✓ | —/— | —/— | Yes (1) | Scaffold, Reference | 1.38 Gbp 60 | 2,040,001 345 bp | 1 | 7 | 226 | 6/7 (85.7%) | 118/213 (55.4%) | 2025-03-29 |
| EX 絶滅 | Columba jouyi リュウキュウカラスバト | EX | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 25 | 40 | 4/38 (10.5%) | 12/354 (3.4%) | — |
| EX 絶滅 | Columba versicolor オガサワラカラスバト | EX | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 25 | 40 | 4/38 (10.5%) | 12/354 (3.4%) | — |
| EX 絶滅 | Nycticorax caledonicus crassirostris ハシブトゴイ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 12 | 1/2 (50.0%) | 9/68 (13.2%) | — |
| EX 絶滅 | Porzana cinerea brevipes マミジロクイナ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 23 | 0/1 (0.0%) | 15/145 (10.3%) | — |
| EX 絶滅 | Buteo buteo oshiroi ダイトウノスリ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 3 | 21 | 179 | 16/29 (55.2%) | 145/275 (52.7%) | — |
| EX 絶滅 | Todiramphus miyakoensis ミヤコショウビン | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 4 | 28 | 4/30 (13.3%) | 27/114 (23.7%) | — |
| EX 絶滅 | Dryocopus javensis richardsi キタタキ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 16 | 1/6 (16.7%) | 11/226 (4.9%) | — |
| EX 絶滅 | Falco peregrinus furuitii シマハヤブサ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 12 | 62 | 72 | 27/39 (69.2%) | 37/66 (56.1%) | — |
| EX 絶滅 | Poecile varius orii ダイトウヤマガラ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 19 | 0/5 (0.0%) | 9/83 (10.8%) | — |
| EX 絶滅 | Apalopteron familiare familiare メグロ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 9 | 0/1 (0.0%) | 7/129 (5.4%) | — |
| EX 絶滅 | Troglodytes troglodytes orii ダイトウミソサザイ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 7 | 0/17 (0.0%) | 7/121 (5.8%) | — |
| EX 絶滅 | Cichlopasser terrestris オガサワラガビチョウ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Luscinia komadori subrufus ウスアカヒゲ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 1 | 37 | 1/6 (16.7%) | 33/299 (11.0%) | — |
| EX 絶滅 | Chaunoproctus ferreorostris オガサワラマシコ | EX | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 97 | 0/1 (0.0%) | 53/291 (18.2%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Anser caerulescens caerulescens ハクガン | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 27 | 226 | 10/16 (62.5%) | 118/213 (55.4%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Branta hutchinsii leucopareia シジュウカラガン | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 11 | 226 | 6/10 (60.0%) | 118/213 (55.4%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Columba janthina nitens アカガシラカラスバト | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | Yes (1) | Scaffold, Reference | 1.08 Gbp 60 | 32,051 110 kbp | 1 | 25 | 40 | 4/38 (10.5%) | 12/354 (3.4%) | 2020-08-22 |
| CR 絶滅危惧ⅠＡ類（CR） | Puffinus bryani オガサワラヒメミズナギドリ | CR | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 8 | 2/32 (6.2%) | 6/113 (5.3%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Oceanodroma castro クロコシジロウミツバメ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| CR 絶滅危惧ⅠＡ類（CR） | Ciconia boyciana コウノトリ | EN | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (3) | Chromosome, Reference | 1.24 Gbp 81 | 429 35.8 Mbp | 3 | 13 | 18 | 7/8 (87.5%) | 12/66 (18.2%) | 2019-05-08 |
| CR 絶滅危惧ⅠＡ類（CR） | Phalacrocorax urile チシマウガラス | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 9 | 9 | 6/21 (28.6%) | 6/43 (14.0%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Ixobrychus eurhythmus オオヨシゴイ | LC | ✓ | ✓ | ✓ | ✓ | ✓/9 | ✓/✓ | No | — | — | — | 0 | 0 | 12 | 0/10 (0.0%) | 9/68 (13.2%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Nipponia nippon トキ | EN | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (3) | Scaffold, Reference | 1.22 Gbp 105 | 130,029 29.1 kbp | 3 | 3 | 12 | 1/1 (100.0%) | 8/30 (26.7%) | 2014-06-16 |
| CR 絶滅危惧ⅠＡ類（CR） | Gallirallus okinawae ヤンバルクイナ | EN | ✓ | ✓ | ✓ | ✓ | ✓/10 | —/✓ | Yes (2) | Scaffold, Reference | 1.18 Gbp 100 | 440 20.7 Mbp | 2 | 4 | 23 | 3/10 (30.0%) | 15/145 (10.3%) | 2019-05-11 |
| CR 絶滅危惧ⅠＡ類（CR） | Eurynorhynchus pygmeus ヘラシギ | CR | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 38 | 44,335 189 kbp | 1 | 20 | 57 | 14/24 (58.3%) | 44/89 (49.4%) | 2018-10-30 |
| CR 絶滅危惧ⅠＡ類（CR） | Tringa guttifer カラフトアオアシシギ | EN | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 5 | 57 | 5/16 (31.2%) | 44/89 (49.4%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Fratercula cirrhata エトピリカ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | Yes (1) | Scaffold, Reference | 1.11 Gbp 85 | 111,227 19.7 kbp | 1 | 4 | 12 | 2/3 (66.7%) | 7/23 (30.4%) | 2020-08-22 |
| CR 絶滅危惧ⅠＡ類（CR） | Synthliboramphus antiquus ウミスズメ | LC | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | No | — | — | — | 0 | 0 | 12 | 0/4 (0.0%) | 7/23 (30.4%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Uria aalge inornata ウミガラス | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | Yes (1) | Scaffold, — | 1.04 Gbp 74 | 104,657 19.4 kbp | 2 | 3 | 12 | 2/2 (100.0%) | 7/23 (30.4%) | 2020-08-22 |
| CR 絶滅危惧ⅠＡ類（CR） | Spilornis cheela perplexus カンムリワシ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 179 | 1/13 (7.7%) | 145/275 (52.7%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Aegolius funereus magnus キンメフクロウ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 1 | 53 | 1/4 (25.0%) | 38/186 (20.4%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Bubo bubo ワシミミズク | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | Yes (1) | Scaffold, Reference | 1.26 Gbp 104 | 133,317 37.1 kbp | 1 | 10 | 53 | 4/18 (22.2%) | 38/186 (20.4%) | 2020-02-04 |
| CR 絶滅危惧ⅠＡ類（CR） | Ketupa blakistoni blakistoni シマフクロウ | — | — | ✓ | — | ✓ | —/— | —/— | No | — | — | — | 1 | 10 | 53 | 4/18 (22.2%) | 38/186 (20.4%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Picoides tridactylus inouyei ミユビゲラ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 1 | 16 | 1/5 (20.0%) | 11/226 (4.9%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Sapheopipo noguchii ノグチゲラ | EN | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | Yes (1) | Scaffold, Reference | 1.13 Gbp 74 | 179,014 18.5 kbp | 1 | 1 | 16 | 1/14 (7.1%) | 11/226 (4.9%) | 2019-02-16 |
| CR 絶滅危惧ⅠＡ類（CR） | Lanius tigrinus チゴモズ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 4 | 4 | 4/30 (13.3%) | 4/34 (11.8%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Chloris sinica kittlitzi オガサワラカワラヒワ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/✓ | No | — | — | — | 0 | 0 | 97 | 0/5 (0.0%) | 53/291 (18.2%) | — |
| CR 絶滅危惧ⅠＡ類（CR） | Emberiza aureola ornata シマアオジ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 1 | 8 | 97 | 7/44 (15.9%) | 53/291 (18.2%) | — |
| EN 絶滅危惧ⅠB類（EN） | Lagopus muta japonica ライチョウ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/✓ | Yes (1) | Scaffold, — | 1.00 Gbp 71 | 72,306 56.2 kbp | 3 | 4 | 96 | 2/6 (33.3%) | 31/207 (15.0%) | 2019-02-15 |
| EN 絶滅危惧ⅠB類（EN） | Anser erythropus カリガネ | VU | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | Yes (3) | Chromosome, Reference | 1.34 Gbp 61 | 1,845 2.38 Mbp | 3 | 27 | 226 | 10/16 (62.5%) | 118/213 (55.4%) | 2025-05-03 |
| EN 絶滅危惧ⅠB類（EN） | Phaethon rubricauda rothschildi アカオネッタイチョウ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 3 | 3 | 2/3 (66.7%) | 2/3 (66.7%) | — |
| EN 絶滅危惧ⅠB類（EN） | Chalcophaps indica yamashinai キンバト | — | ✓ | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 40 | 0/3 (0.0%) | 12/354 (3.4%) | — |
| EN 絶滅危惧ⅠB類（EN） | Columba janthina stejnegeri ヨナグニカラスバト | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 25 | 40 | 4/38 (10.5%) | 12/354 (3.4%) | — |
| EN 絶滅危惧ⅠB類（EN） | Streptopelia decaocto decaocto シラコバト | — | ✓ | — | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 2 | 4 | 40 | 2/15 (13.3%) | 12/354 (3.4%) | — |
| EN 絶滅危惧ⅠB類（EN） | Phoebastria immutabilis コアホウドリ | NT | ✓ | ✓ | ✓ | ✓ | ✓/9 | ✓/✓ | Yes (1) | Scaffold, Reference | 1.21 Gbp 55 | 24,439 107 kbp | 1 | 5 | 8 | 4/6 (66.7%) | 7/27 (25.9%) | 2024-01-11 |
| EN 絶滅危惧ⅠB類（EN） | Puffinus lherminieri bannermani セグロミズナギドリ | EN | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 8 | 2/32 (6.2%) | 6/113 (5.3%) | — |
| EN 絶滅危惧ⅠB類（EN） | Sula sula rubripes アカアシカツオドリ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 1 | 7 | 14 | 5/6 (83.3%) | 9/11 (81.8%) | — |
| EN 絶滅危惧ⅠB類（EN） | Phalacrocorax pelagicus pelagicus ヒメウ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 1 | 9 | 9 | 6/21 (28.6%) | 6/43 (14.0%) | — |
| EN 絶滅危惧ⅠB類（EN） | Botaurus stellaris stellaris サンカノゴイ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 2 | 12 | 2/4 (50.0%) | 9/68 (13.2%) | — |
| EN 絶滅危惧ⅠB類（EN） | Platalea minor クロツラヘラサギ | EN | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (1) | Scaffold, Reference | 1.24 Gbp 19 | 1,460 8.68 Mbp | 1 | 3 | 12 | 2/6 (33.3%) | 8/30 (26.7%) | 2024-04-05 |
| EN 絶滅危惧ⅠB類（EN） | Coturnicops exquisitus シマクイナ | LC | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | No | — | — | — | 0 | 0 | 23 | 0/3 (0.0%) | 15/145 (10.3%) | — |
| EN 絶滅危惧ⅠB類（EN） | Rallina eurizonoides sepiaria オオクイナ | — | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | No | — | — | — | 0 | 0 | 23 | 0/3 (0.0%) | 15/145 (10.3%) | — |
| EN 絶滅危惧ⅠB類（EN） | Numenius minutus コシャクシギ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 4 | 57 | 2/9 (22.2%) | 44/89 (49.4%) | — |
| EN 絶滅危惧ⅠB類（EN） | Accipiter gularis iwasakii リュウキュウツミ | — | ✓ | — | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 2 | 24 | 179 | 22/43 (51.2%) | 145/275 (52.7%) | — |
| EN 絶滅危惧ⅠB類（EN） | Aquila chrysaetos japonica イヌワシ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | Yes (2) | Scaffold, — | 1.19 Gbp 100 | 348 16.9 Mbp | 8 | 15 | 179 | 8/12 (66.7%) | 145/275 (52.7%) | 2020-04-03 |
| EN 絶滅危惧ⅠB類（EN） | Buteo buteo toyoshimai オガサワラノスリ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 21 | 179 | 16/29 (55.2%) | 145/275 (52.7%) | — |
| EN 絶滅危惧ⅠB類（EN） | Circus spilonotus spilonotus チュウヒ | — | ✓ | — | ✓ | ✓ | —/— | —/✓ | No | — | — | — | 0 | 10 | 179 | 9/17 (52.9%) | 145/275 (52.7%) | — |
| EN 絶滅危惧ⅠB類（EN） | Nisaetus nipalensis orientalis クマタカ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 2 | 5 | 179 | 4/11 (36.4%) | 145/275 (52.7%) | — |
| EN 絶滅危惧ⅠB類（EN） | Eurystomus orientalis calonyx ブッポウソウ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 4 | 2/4 (50.0%) | 4/12 (33.3%) | — |
| EN 絶滅危惧ⅠB類（EN） | Pitta nympha ヤイロチョウ | VU | ✓ | ✓ | ✓ | ✓ | ✓/10 | —/✓ | No | — | — | — | 0 | 1 | 1 | 1/15 (6.7%) | 1/47 (2.1%) | — |
| EN 絶滅危惧ⅠB類（EN） | Lanius cristatus superciliosus アカモズ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 4 | 4 | 4/30 (13.3%) | 4/34 (11.8%) | — |
| EN 絶滅危惧ⅠB類（EN） | Poecile varius namiyei ナミエヤマガラ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 0 | 19 | 0/5 (0.0%) | 9/83 (10.8%) | — |
| EN 絶滅危惧ⅠB類（EN） | Poecile varius owstoni オーストンヤマガラ | EN | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 19 | 0/5 (0.0%) | 9/83 (10.8%) | — |
| EN 絶滅危惧ⅠB類（EN） | Apalopteron familiare hahasima ハハジマメグロ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 9 | 0/1 (0.0%) | 7/129 (5.4%) | — |
| EN 絶滅危惧ⅠB類（EN） | Locustella pleskei ウチヤマセンニュウ | VU | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 1 | 2 | 1/4 (25.0%) | 2/62 (3.2%) | — |
| EN 絶滅危惧ⅠB類（EN） | Locustella pryeri pryeri オオセッカ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/✓ | No | — | — | — | 0 | 1 | 2 | 1/22 (4.5%) | 2/62 (3.2%) | — |
| EN 絶滅危惧ⅠB類（EN） | Troglodytes troglodytes mosukei モスケミソサザイ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 0 | 7 | 0/17 (0.0%) | 7/121 (5.8%) | — |
| EN 絶滅危惧ⅠB類（EN） | Luscinia komadori namiyei ホントウアカヒゲ | — | ✓ | — | — | — | —/— | —/— | No | — | — | — | 0 | 1 | 37 | 1/6 (16.7%) | 33/299 (11.0%) | — |
| EN 絶滅危惧ⅠB類（EN） | Turdus celaenops アカコッコ | VU | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 10 | 34 | 7/86 (8.1%) | 23/216 (10.6%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Coturnix japonica ウズラ | NT | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (3) | Chromosome, Reference | 928 Mbp 73 | 9,641 511 kbp | 3 | 5 | 96 | 2/15 (13.3%) | 31/207 (15.0%) | 2016-03-01 |
| VU 絶滅危惧Ⅱ類（VU） | Anas formosa トモエガモ | LC | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (1) | Scaffold, Reference | 1.24 Gbp 60 | 565,536 8.73 kbp | 1 | 1 | 226 | 1/1 (100.0%) | 118/213 (55.4%) | 2024-04-22 |
| VU 絶滅危惧Ⅱ類（VU） | Anser fabalis serrirostris ヒシクイ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 27 | 226 | 10/16 (62.5%) | 118/213 (55.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Branta bernicla orientalis コクガン | — | ✓ | ✓ | ✓ | ✓ | —/— | —/✓ | No | — | — | — | 1 | 11 | 226 | 6/10 (60.0%) | 118/213 (55.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Tadorna tadorna ツクシガモ | LC | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (2) | Scaffold, Reference | 1.18 Gbp 195 | 34,957 169 kbp | 2 | 7 | 226 | 6/7 (85.7%) | 118/213 (55.4%) | 2024-12-06 |
| VU 絶滅危惧Ⅱ類（VU） | Phoebastria albatrus アホウドリ | VU | ✓ | ✓ | ✓ | ✓ | ✓/9 | ✓/✓ | Yes (2) | Scaffold, Reference | 1.21 Gbp 44 | 36,840 68.7 kbp | 2 | 5 | 8 | 4/6 (66.7%) | 7/27 (25.9%) | 2020-08-22 |
| VU 絶滅危惧Ⅱ類（VU） | Oceanodroma monorhis ヒメクロウミツバメ | NT | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| VU 絶滅危惧Ⅱ類（VU） | Gorsachius goisagi ミゾゴイ | VU | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | Yes (1) | Scaffold, Reference | 1.19 Gbp 103 | 100,190 43.0 kbp | 1 | 3 | 12 | 2/4 (50.0%) | 9/68 (13.2%) | 2021-03-31 |
| VU 絶滅危惧Ⅱ類（VU） | Gorsachius melanolophus ズグロミゾゴイ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 3 | 12 | 2/4 (50.0%) | 9/68 (13.2%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Grus japonensis タンチョウ | VU | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (3) | Scaffold, Reference | 1.22 Gbp 100 | 603 19.9 Mbp | 3 | 12 | 19 | 5/7 (71.4%) | 9/16 (56.2%) | 2019-05-08 |
| VU 絶滅危惧Ⅱ類（VU） | Grus monacha ナベヅル | VU | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 67 | 95,217 38.5 kbp | 1 | 12 | 19 | 5/7 (71.4%) | 9/16 (56.2%) | 2020-04-08 |
| VU 絶滅危惧Ⅱ類（VU） | Grus vipio マナヅル | VU | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 54 | 107,175 32.9 kbp | 1 | 1 | 19 | 1/4 (25.0%) | 9/16 (56.2%) | 2020-04-08 |
| VU 絶滅危惧Ⅱ類（VU） | Charadrius alexandrinus dealbatus シロチドリ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 3 | 19 | 2/24 (8.3%) | 12/85 (14.1%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Himantopus himantopus himantopus セイタカシギ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 1 | 2 | 3 | 2/5 (40.0%) | 3/10 (30.0%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Limosa lapponica baueri オオソリハシシギ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | Yes (1) | Scaffold, Reference | 1.03 Gbp 71 | 139,617 21.3 kbp | 1 | 1 | 57 | 1/4 (25.0%) | 44/89 (49.4%) | 2017-12-15 |
| VU 絶滅危惧Ⅱ類（VU） | Numenius madagascariensis ホウロクシギ | EN | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 4 | 57 | 2/9 (22.2%) | 44/89 (49.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Scolopax mira アマミヤマシギ | VU | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | Yes (1) | Scaffold, Reference | 1.09 Gbp 55 | 79,353 61.2 kbp | 1 | 6 | 57 | 4/4 (100.0%) | 44/89 (49.4%) | 2019-02-15 |
| VU 絶滅危惧Ⅱ類（VU） | Tringa erythropus ツルシギ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | Yes (1) | Scaffold, Reference | 1.09 Gbp 199 | 43,935 198 kbp | 1 | 5 | 57 | 5/16 (31.2%) | 44/89 (49.4%) | 2024-12-06 |
| VU 絶滅危惧Ⅱ類（VU） | Tringa glareola タカブシギ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 5 | 57 | 5/16 (31.2%) | 44/89 (49.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Tringa totanus ussuriensis アカアシシギ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 5 | 57 | 5/16 (31.2%) | 44/89 (49.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Rostratula benghalensis benghalensis タマシギ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | Yes (1) | Scaffold, Reference | 1.10 Gbp 67 | 33,928 78.7 kbp | 1 | 1 | 2 | 1/1 (100.0%) | 2/2 (100.0%) | 2020-07-10 |
| VU 絶滅危惧Ⅱ類（VU） | Glareola maldivarum ツバメチドリ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 1 | 3 | 1/5 (20.0%) | 3/11 (27.3%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Larus saundersi ズグロカモメ | VU | ✓ | ✓ | ✓ | ✓ | —/— | —/✓ | No | — | — | — | 0 | 5 | 42 | 3/12 (25.0%) | 26/105 (24.8%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Sterna albifrons sinensis コアジサシ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 1 | 1 | 42 | 1/7 (14.3%) | 26/105 (24.8%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Sterna bergii cristata オオアジサシ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 42 | 0/8 (0.0%) | 26/105 (24.8%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Sterna dougallii bangsi ベニアジサシ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/✓ | No | — | — | — | 0 | 2 | 42 | 1/10 (10.0%) | 26/105 (24.8%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Sterna sumatrana エリグロアジサシ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 2 | 42 | 1/10 (10.0%) | 26/105 (24.8%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Cepphus carbo ケイマフリ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 1 | 12 | 1/3 (33.3%) | 7/23 (30.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Synthliboramphus wumizusume カンムリウミスズメ | VU | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | No | — | — | — | 0 | 0 | 12 | 0/4 (0.0%) | 7/23 (30.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Butastur indicus サシバ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | Yes (1) | Scaffold, Reference | 1.18 Gbp 75 | 67,994 36.2 kbp | 1 | 3 | 179 | 3/4 (75.0%) | 145/275 (52.7%) | 2022-12-09 |
| VU 絶滅危惧Ⅱ類（VU） | Haliaeetus albicilla albicilla オジロワシ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 5 | 10 | 179 | 6/10 (60.0%) | 145/275 (52.7%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Haliaeetus pelagicus オオワシ | VU | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | Yes (1) | Scaffold, Reference | 1.18 Gbp 49 | 33,489 86.6 kbp | 1 | 10 | 179 | 6/10 (60.0%) | 145/275 (52.7%) | 2020-08-22 |
| VU 絶滅危惧Ⅱ類（VU） | Otus elegans interpositus ダイトウコノハズク | — | — | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 1 | 15 | 53 | 14/38 (36.8%) | 38/186 (20.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Otus lempiji pryeri リュウキュウオオコノハズク | — | ✓ | — | — | — | —/— | —/— | No | — | — | — | 1 | 15 | 53 | 14/38 (36.8%) | 38/186 (20.4%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Dendrocopos leucotos owstoni オーストンオオアカゲラ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 1 | 16 | 1/14 (7.1%) | 11/226 (4.9%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Dryocopus martius martius クマゲラ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/✓ | No | — | — | — | 1 | 1 | 16 | 1/6 (16.7%) | 11/226 (4.9%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Falco peregrinus japonensis ハヤブサ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 12 | 62 | 72 | 27/39 (69.2%) | 37/66 (56.1%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Pericrocotus divaricatus divaricatus サンショウクイ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 0 | 1 | 0/14 (0.0%) | 1/86 (1.2%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Phylloscopus ijimae イイジマムシクイ | VU | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 11 | 12 | 7/86 (8.1%) | 8/88 (9.1%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Luscinia akahige tanensis タネコマドリ | — | ✓ | — | — | — | —/— | —/— | No | — | — | — | 0 | 1 | 37 | 1/6 (16.7%) | 33/299 (11.0%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Luscinia komadori komadori アカヒゲ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 1 | 37 | 1/6 (16.7%) | 33/299 (11.0%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Zoothera dauma major オオトラツグミ | LC | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 34 | 0/20 (0.0%) | 23/216 (10.6%) | — |
| VU 絶滅危惧Ⅱ類（VU） | Emberiza yessoensis yessoensis コジュリン | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 8 | 97 | 7/44 (15.9%) | 53/291 (18.2%) | — |
| NT 準絶滅危惧 | Syrmaticus soemmerringii ijimae コシジロヤマドリ | — | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/— | No | — | — | — | 0 | 2 | 96 | 2/5 (40.0%) | 31/207 (15.0%) | — |
| NT 準絶滅危惧 | Syrmaticus soemmerringii soemmerringii アカヤマドリ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 96 | 2/5 (40.0%) | 31/207 (15.0%) | — |
| NT 準絶滅危惧 | Anser albifrons albifrons マガン | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 3 | 27 | 226 | 10/16 (62.5%) | 118/213 (55.4%) | — |
| NT 準絶滅危惧 | Anser fabalis middendorffii オオヒシクイ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 2 | 27 | 226 | 10/16 (62.5%) | 118/213 (55.4%) | — |
| NT 準絶滅危惧 | Columba janthina janthina カラスバト | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 25 | 40 | 4/38 (10.5%) | 12/354 (3.4%) | — |
| NT 準絶滅危惧 | Oceanodroma matsudairae クロウミツバメ | VU | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| NT 準絶滅危惧 | Oceanodroma tristrami オーストンウミツバメ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 2 | 0 | 2/16 (12.5%) | 0 | — |
| NT 準絶滅危惧 | Egretta eulophotes カラシラサギ | VU | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | No | — | — | — | 0 | 1 | 12 | 1/12 (8.3%) | 9/68 (13.2%) | — |
| NT 準絶滅危惧 | Egretta intermedia intermedia チュウサギ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 12 | 1/12 (8.3%) | 9/68 (13.2%) | — |
| NT 準絶滅危惧 | Ixobrychus sinensis sinensis ヨシゴイ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 12 | 0/10 (0.0%) | 9/68 (13.2%) | — |
| NT 準絶滅危惧 | Porzana fusca erythrothorax ヒクイナ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 2 | 23 | 2/9 (22.2%) | 15/145 (10.3%) | — |
| NT 準絶滅危惧 | Caprimulgus indicus jotaka ヨタカ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 3 | 6 | 1/30 (3.3%) | 4/74 (5.4%) | — |
| NT 準絶滅危惧 | Calidris alpina ハマシギ | NT | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | Yes (1) | Scaffold, Reference | 1.27 Gbp 48 | 98,812 98.5 kbp | 1 | 20 | 57 | 14/24 (58.3%) | 44/89 (49.4%) | 2023-11-14 |
| NT 準絶滅危惧 | Gallinago hardwickii オオジシギ | NT | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | Yes (1) | Scaffold, Reference | 1.14 Gbp 105 | 119,495 25.4 kbp | 1 | 11 | 57 | 11/13 (84.6%) | 44/89 (49.4%) | 2022-11-10 |
| NT 準絶滅危惧 | Larus schistisagus オオセグロカモメ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 22 | 42 | 11/29 (37.9%) | 26/105 (24.8%) | — |
| NT 準絶滅危惧 | Pandion haliaetus haliaetus ミサゴ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 2 | 2 | 2 | 1/2 (50.0%) | 1/2 (50.0%) | — |
| NT 準絶滅危惧 | Accipiter gentilis fujiyamae オオタカ | — | ✓ | — | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 5 | 6 | 179 | 2/3 (66.7%) | 145/275 (52.7%) | — |
| NT 準絶滅危惧 | Accipiter nisus nisosimilis ハイタカ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 2 | 24 | 179 | 22/43 (51.2%) | 145/275 (52.7%) | — |
| NT 準絶滅危惧 | Pernis ptilorhynchus orientalis ハチクマ | — | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 2 | 179 | 2/5 (40.0%) | 145/275 (52.7%) | — |
| NT 準絶滅危惧 | Poecile varius olivaceus オリイヤマガラ | LC | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 19 | 0/5 (0.0%) | 9/83 (10.8%) | — |
| NT 準絶滅危惧 | Locustella lanceolata マキノセンニュウ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | Yes (1) | Scaffold, Reference | 1.19 Gbp 215 | 97,266 134 kbp | 1 | 1 | 2 | 1/22 (4.5%) | 2/62 (3.2%) | 2024-12-06 |
| NT 準絶滅危惧 | Emberiza sulphurata ノジコ | LC | ✓ | ✓ | ✓ | ✓ | ✓/1 | —/✓ | No | — | — | — | 0 | 8 | 97 | 7/44 (15.9%) | 53/291 (18.2%) | — |
| DD 情報不足 | Tetrastes bonasia vicinitas エゾライチョウ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 96 | 0/2 (0.0%) | 31/207 (15.0%) | — |
| DD 情報不足 | Aix galericulata オシドリ | LC | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (2) | Scaffold, Reference | 1.08 Gbp 230 | 34,019 77.4 kbp | 2 | 5 | 226 | 2/3 (66.7%) | 118/213 (55.4%) | 2022-08-16 |
| DD 情報不足 | Anser cygnoides サカツラガン | EN | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (7) | Chromosome, Reference | 1.22 Gbp 70 | 116 39.7 Mbp | 7 | 27 | 226 | 10/16 (62.5%) | 118/213 (55.4%) | 2015-04-08 |
| DD 情報不足 | Aythya baeri アカハジロ | CR | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | Yes (1) | Chromosome, Reference | 1.14 Gbp 162.11 | 227 29.1 Mbp | 1 | 18 | 226 | 10/12 (83.3%) | 118/213 (55.4%) | 2022-11-27 |
| DD 情報不足 | Tadorna ferruginea アカツクシガモ | LC | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | Yes (1) | Scaffold, Reference | 1.14 Gbp 60 | 235,439 26.8 kbp | 1 | 7 | 226 | 6/7 (85.7%) | 118/213 (55.4%) | 2025-11-24 |
| DD 情報不足 | Pterodroma hypoleuca シロハラミズナギドリ | LC | ✓ | ✓ | ✓ | ✓ | ✓/1 | —/— | No | — | — | — | 0 | 0 | 8 | 0/37 (0.0%) | 6/113 (5.3%) | — |
| DD 情報不足 | Platalea leucorodia leucorodia ヘラサギ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 2 | 3 | 12 | 2/6 (33.3%) | 8/30 (26.7%) | — |
| DD 情報不足 | Threskiornis melanocephalus クロトキ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 1 | 12 | 1/4 (25.0%) | 8/30 (26.7%) | — |
| DD 情報不足 | Grus grus lilfordi クロヅル | — | ✓ | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 3 | 12 | 19 | 5/7 (71.4%) | 9/16 (56.2%) | — |
| DD 情報不足 | Vanellus cinereus ケリ | LC | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | No | — | — | — | 0 | 4 | 19 | 1/11 (9.1%) | 12/85 (14.1%) | — |
| DD 情報不足 | Calidris ptilocnemis quarta チシマシギ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 20 | 57 | 14/24 (58.3%) | 44/89 (49.4%) | — |
| DD 情報不足 | Limnodromus semipalmatus シベリアオオハシシギ | NT | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 2 | 57 | 1/4 (25.0%) | 44/89 (49.4%) | — |
| DD 情報不足 | Brachyramphus perdix マダラウミスズメ | NT | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 0 | 12 | 0/3 (0.0%) | 7/23 (30.4%) | — |
| DD 情報不足 | Cettia diphone restricta ダイトウウグイス | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 1 | 1/15 (6.7%) | 1/19 (5.3%) | — |
| DD 情報不足 | Phylloscopus examinandus オオムシクイ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 11 | 12 | 7/86 (8.1%) | 8/88 (9.1%) | — |
| DD 情報不足 | Ficedula narcissina owstoni リュウキュウキビタキ | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | —/✓ | No | — | — | — | 0 | 5 | 37 | 4/34 (11.8%) | 33/299 (11.0%) | — |
| DD 情報不足 | Zoothera dauma iriomotensis コトラツグミ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 34 | 0/20 (0.0%) | 23/216 (10.6%) | — |
| LP 絶滅のおそれの ある地域個体群 | Histrionicus histrionicu 東北地方以北のシノリガモ繁殖個体群 | LC | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 0 | 226 | 0/1 (0.0%) | 118/213 (55.4%) | — |
| LP 絶滅のおそれの ある地域個体群 | Podiceps cristatus cristatus 青森県のカンムリカイツブリ繁殖個体群 | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 1 | 3 | 4 | 3/6 (50.0%) | 4/17 (23.5%) | — |