Genome sequence data availability
for the Japanese Red Lists
Updated on 2024-10-01
This page shows only entries with the "EX" conservation status. This table is also available in TSV format.
This page shows only entries with the "EX" conservation status. This table is also available in TSV format.
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Pteropus loochoensis オキナワオオコウモリ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | — |
| EX 絶滅 | Rhinolophus pumilus miyakonis ミヤココキクガシラコウモリ | — | — | — | — | — | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| EX 絶滅 | Pipistrellus sturdeei オガサワラアブラコウモリ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 48 | 4/77 (5.2%) | 29/892 (3.3%) | — |
| EX 絶滅 | Canis lupus hattai エゾオオカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 30 | 31 | 52 | 2/29 (6.9%) | 12/65 (18.5%) | — |
| EX 絶滅 | Canis lupus hodophilax ニホンオオカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 30 | 31 | 52 | 2/29 (6.9%) | 12/65 (18.5%) | — |
| EX 絶滅 | Lutra lutra nippon ニホンカワウソ（本州以南亜種） | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 64 | 1/4 (25.0%) | 20/70 (28.6%) | — |
| EX 絶滅 | Lutra lutra whiteleyi ニホンカワウソ（北海道亜種） | — | — | — | ✓ | ✓ | No | — | — | — | 2 | 2 | 64 | 1/4 (25.0%) | 20/70 (28.6%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Tadorna cristata カンムリツクシガモ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 111 | 0/6 (0.0%) | 59/199 (29.6%) | — |
| EX 絶滅 | Columba jouyi リュウキュウカラスバト | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 22 | 3/39 (7.7%) | 9/353 (2.5%) | — |
| EX 絶滅 | Columba versicolor オガサワラカラスバト | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 10 | 22 | 3/39 (7.7%) | 9/353 (2.5%) | — |
| EX 絶滅 | Nycticorax caledonicus crassirostris ハシブトゴイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 7 | 1/2 (50.0%) | 6/66 (9.1%) | — |
| EX 絶滅 | Porzana cinerea brevipes マミジロクイナ | — | — | — | — | — | No | — | — | — | 0 | 0 | 18 | 0/1 (0.0%) | 12/141 (8.5%) | — |
| EX 絶滅 | Buteo buteo oshiroi ダイトウノスリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 3 | 20 | 163 | 16/29 (55.2%) | 134/274 (48.9%) | — |
| EX 絶滅 | Todiramphus miyakoensis ミヤコショウビン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 27 | 4/30 (13.3%) | 27/114 (23.7%) | — |
| EX 絶滅 | Dryocopus javensis richardsi キタタキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/6 (0.0%) | 8/222 (3.6%) | — |
| EX 絶滅 | Falco peregrinus furuitii シマハヤブサ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 9 | 55 | 65 | 26/39 (66.7%) | 36/67 (53.7%) | — |
| EX 絶滅 | Poecile varius orii ダイトウヤマガラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/5 (0.0%) | 7/83 (8.4%) | — |
| EX 絶滅 | Apalopteron familiare familiare メグロ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 7/128 (5.5%) | — |
| EX 絶滅 | Troglodytes troglodytes orii ダイトウミソサザイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 7 | 0/17 (0.0%) | 7/116 (6.0%) | — |
| EX 絶滅 | Cichlopasser terrestris オガサワラガビチョウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Luscinia komadori subrufus ウスアカヒゲ | — | — | — | — | — | No | — | — | — | 0 | 0 | 24 | 0/6 (0.0%) | 23/291 (7.9%) | — |
| EX 絶滅 | Chaunoproctus ferreorostris オガサワラマシコ | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 46 | 0/1 (0.0%) | 39/288 (13.5%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Acipenser medirostris チョウザメ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 10 | 4/38 (10.5%) | 6/60 (10.0%) | — |
| EX 絶滅 | Gnathopogon elongatus suwae スワモロコ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 15 | 0/13 (0.0%) | 9/349 (2.6%) | — |
| EX 絶滅 | Pungitius kaibarae ミナミトミヨ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 14 | 1/45 (2.2%) | 4/57 (7.0%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Ishikawatrechus intermedius カドタメクラチビゴミムシ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Rakantrechus elegans コゾノメクラチビゴミムシ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Prodaticus satoi スジゲンゴロウ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 2 | 0/44 (0.0%) | 1/2948 (0.0%) | — |
| EX 絶滅 | Macroplea japana キイロネクイハムシ | — | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 96 | 0/6 (0.0%) | 53/6796 (0.8%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Ogasawarana chichijimana チチジマヤマキサゴ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Ogasawarana habei ソロバンダマヤマキサゴ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Ogasawarana rex アカビシヤマキサゴ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Assiminea sp. D リュウキュウカワザンショウ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/24 (0.0%) | 0/63 (0.0%) | — |
| EX 絶滅 | Hirasea diplomphalus latispira ヒラクボエンザガイ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea eutheca コシタカエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea goniobasis ソコカドエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea hypolia ツヤエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea major オオエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea nesiotica liobasis ハタイエンザガイ | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea planulata biconcava ナカクボエンザガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea planulata planulata ヒラマキエンザガイ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea profundispira コダマエンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasea sinuosa エンザガイ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/135 (0.0%) | — |
| EX 絶滅 | Hirasiella clara エンザガイモドキ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Lamprocystis hahajimana pachychilus アツクチハハジマヒメベッコウ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/12 (0.0%) | — |
| EX 絶滅 | Trochochlamys ogasawarana オガサワラキビ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/11 (0.0%) | — |
| EX 絶滅 | Vitrinula chichijimana チチジマレンズガイ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Vitrinula hahajimana ハハジマレンズガイ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Compressalges nipponiae トキウモウダニ | — | — | — | ✓ | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Elatostema lineolatum var. majus ホソバノキミズ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/206 (0.0%) | 4/1099 (0.4%) | — |
| EX 絶滅 | Ranunculus gmelinii カラクサキンポウゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/432 (0.0%) | 7/1877 (0.4%) | — |
| EX 絶滅 | Rubus hatsushimae ツクシアキツルイチゴ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 202 | 5/748 (0.7%) | 78/3788 (2.1%) | — |
| EX 絶滅 | Flemingia strobilifera ソロハギ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 295 | 0/43 (0.0%) | 134/16039 (0.8%) | — |
| EX 絶滅 | Lespedeza hisauchii サガミメドハギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 295 | 1/64 (1.6%) | 134/16039 (0.8%) | — |
| EX 絶滅 | Euphrasia insignis subsp. insignis var. omiensis オオミコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 8 | 2/111 (1.8%) | 7/1389 (0.5%) | — |
| EX 絶滅 | Euphrasia insignis subsp. insignis var. pubigera マツラコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 8 | 2/111 (1.8%) | 7/1389 (0.5%) | — |
| EX 絶滅 | Euphrasia multifolia var. kirisimana クモイコゴメグサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 8 | 2/111 (1.8%) | 7/1389 (0.5%) | — |
| EX 絶滅 | Cirsium toyoshimae トヨシマアザミ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 112 | 0/204 (0.0%) | 68/15892 (0.4%) | — |
| EX 絶滅 | Aletris makiyataroi ヒメソクシンラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/26 (0.0%) | 1/35 (2.9%) | — |
| EX 絶滅 | Burmannia coelestris ミドリシャクジョウ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/37 (0.0%) | 0/72 (0.0%) | — |
| EX 絶滅 | Thismia tuberculata キリシマタヌキノショクダイ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/58 (0.0%) | 0/62 (0.0%) | — |
| EX 絶滅 | Eriocaulon cauliferum タカノホシクサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/153 (0.0%) | 0/482 (0.0%) | — |
| EX 絶滅 | Cyperus diaphanus タチガヤツリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 37 | 1/355 (0.3%) | 25/3492 (0.7%) | — |
| EX 絶滅 | Cyperus procerus ホクトガヤツリ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 37 | 1/355 (0.3%) | 25/3492 (0.7%) | — |
| EX 絶滅 | Fimbristylis leptoclada var. takamineana チャイロテンツキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 37 | 0/67 (0.0%) | 25/3492 (0.7%) | — |
| EX 絶滅 | Fimbristylis pauciflora イシガキイトテンツキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 37 | 0/67 (0.0%) | 25/3492 (0.7%) | — |
| EX 絶滅 | Acanthephippium striatum タイワンアオイラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/4 (0.0%) | 22/11568 (0.2%) | — |
| EX 絶滅 | Neottia kiusiana ツクシサカネラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/41 (0.0%) | 22/11568 (0.2%) | — |
| EX 絶滅 | Odontochilus poilanei ツシマラン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/8 (0.0%) | 22/11568 (0.2%) | — |
| EX 絶滅 | Renanthera labrosa ジンヤクラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/10 (0.0%) | 22/11568 (0.2%) | — |
| EX 絶滅 | Zeuxine boninensis ムニンキヌラン | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 28 | 0/16 (0.0%) | 22/11568 (0.2%) | — |
| EX 絶滅 | Lycopodium cunninghamioides コウヨウザンカズラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/190 (0.0%) | 1/328 (0.3%) | — |
| EX 絶滅 | Botrychium boreale タカネハナワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/66 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Ophioglossum parvifolium イオウジマハナヤスリ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/49 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hypolepis tenuifolia オオイワヒメワラビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/42 (0.0%) | 0/166 (0.0%) | — |
| EX 絶滅 | Tectaria dissecta ウスバシダモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/156 (0.0%) | 0/198 (0.0%) | — |
| EX 絶滅 | Pyrrosia angustissima ヒトツバノキシノブ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/74 (0.0%) | 0/1264 (0.0%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Chara fibrosa C.Agardh ex Bruzelius var. brevibracteata Kasaki イケダシャジクモ | — | — | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/69 (1.4%) | 1/192 (0.5%) | — |
| EX 絶滅 | Chara globularis Thuill. var. hakonensis Kasaki ハコネシャジクモ | — | — | — | — | — | No | — | — | — | 0 | 1 | 1 | 1/69 (1.4%) | 1/192 (0.5%) | — |
| EX 絶滅 | Nitella minispora Imahori キザキフラスコモ | — | — | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/61 (0.0%) | 1/192 (0.5%) | — |
| EX 絶滅 | Porphyra angusta Okamura & Ueda コスジノリ | — | — | — | — | — | No | — | — | — | 0 | 1 | 4 | 1/143 (0.7%) | 3/355 (0.8%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Erioderma tomentosum Hue ヌマジリゴケ | — | — | ✓ | ✓ | — | No | — | — | — | 0 | 0 | 4 | 0/4 (0.0%) | 4/144 (2.8%) | — |
| EX 絶滅 | Heterodermia angustiloba (Müll.Arg.) D.D.Awasthi ホソゲジゲジゴケ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 22 | 7/45 (15.6%) | 20/340 (5.9%) | — |
| EX 絶滅 | Heterodermia leucomelos (L.) Poelt イトゲジゲジゴケモドキ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 22 | 7/45 (15.6%) | 20/340 (5.9%) | — |
| EX 絶滅 | Siphula ceratites (Wahlenb.) Fr. シロツノゴケ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 3 | 0/15 (0.0%) | 3/41 (7.3%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Agaricus hahashimensis S.Ito & S.Imai ハハジマモリノカサ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 16 | 42 | 5/909 (0.6%) | 27/2774 (1.0%) | — |
| EX 絶滅 | Albatrellus cantharellus (Lloyd) Pouzar アミラッパタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 2 | 2/32 (6.2%) | 2/48 (4.2%) | — |
| EX 絶滅 | Camarophyllus microbicolor S.Ito フタイロコガサタケ | — | — | — | — | — | No | — | — | — | 0 | 0 | 24 | 0/10 (0.0%) | 15/1091 (1.4%) | — |
| EX 絶滅 | Chlorophyllum agaricoides (Czern.) Vellinga スナタマゴタケ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 42 | 1/32 (3.1%) | 27/2774 (1.0%) | — |
| EX 絶滅 | Circulocolumella hahashimensis (S.Ito & S.Imai) S.Ito & S.Imai ハハシマアコウショウロ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Clitocybe castaneofloccosa S.Ito & S.Imai ムニンヒメサカズキタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 10 | 1/137 (0.7%) | 5/246 (2.0%) | — |
| EX 絶滅 | Collybia matris S.Ito & S.Imai ハハノツエタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 9 | 10 | 4/61 (6.6%) | 5/246 (2.0%) | — |
| EX 絶滅 | Coprinus boninensis S.Ito & S.Imai ムニンヒトヨタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 2 | 42 | 1/64 (1.6%) | 27/2774 (1.0%) | — |
| EX 絶滅 | Cyathus boninensis S.Ito & S.Imai ムニンチャダイゴケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 12 | 3/63 (4.8%) | 11/96 (11.5%) | — |
| EX 絶滅 | Ganoderma colossus (Fr.) C.F.Baker ニセカンバタケ | — | ✓ | — | ✓ | ✓ | No | — | — | — | 0 | 22 | 75 | 10/521 (1.9%) | 47/1835 (2.6%) | — |
| EX 絶滅 | Gymnopilus noviholocirrhus S.Ito & S.Imai オガサワラツムタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 3 | 5 | 2/147 (1.4%) | 4/800 (0.5%) | — |
| EX 絶滅 | Hygrocybe macrospora (S.Ito & S.Imai) S.Ito オオミノアカヤマタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 9 | 3/292 (1.0%) | 6/1196 (0.5%) | — |
| EX 絶滅 | Hygrocybe miniatostriata (S.Ito & S.Imai) S.Ito ムニンキヤマタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 5 | 9 | 3/292 (1.0%) | 6/1196 (0.5%) | — |
| EX 絶滅 | Lactarius ogasawarashimensis S.Ito & S.Imai オガサワラハツタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 24 | 53 | 16/1006 (1.6%) | 41/4256 (1.0%) | — |
| EX 絶滅 | Lentinus lamelliporus Har. & Pat. 和名なし | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 75 | 2/62 (3.2%) | 47/1835 (2.6%) | — |
| EX 絶滅 | Lepiota boninensis S.Ito & S.Imai ムニンヒメカラカサタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 4 | 42 | 3/364 (0.8%) | 27/2774 (1.0%) | — |
| EX 絶滅 | Leptoglossum boninense (S.Ito & Imai) Imazeki & Hongo nom. nud. ムニンチヂミタケ | — | — | — | — | — | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Lycoperdon henningsii Sacc. & P.Syd. コメツブホコリタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 2 | 0/106 (0.0%) | 1/251 (0.4%) | — |
| EX 絶滅 | Pleurotus cyatheae S.Imai ヘゴシロカタハ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 40 | 41 | 14/220 (6.4%) | 15/324 (4.6%) | — |
| EX 絶滅 | Pluteus daidoi S.Ito & S.Imai ダイドウベニヒダタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/442 (0.2%) | 3/686 (0.4%) | — |
| EX 絶滅 | Pluteus horridilamellus S.Ito & S.Imai フサベニヒダタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 1 | 6 | 1/442 (0.2%) | 3/686 (0.4%) | — |
| EX 絶滅 | Psathyrella boninensis (S.Ito & S.Imai) S.Ito オガサワライタチタケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 15 | 0/468 (0.0%) | 11/1067 (1.0%) | — |
| EX 絶滅 | Pyrrhoglossum subpurpureum (S.Ito & S.Imai) E.Horak & Desjardin ムラサキチャヒラタケ | — | — | — | — | — | No | — | — | — | 0 | 3 | 5 | 2/147 (1.4%) | 4/800 (0.5%) | — |
| EX 絶滅 | Rhodophyllus brunneolus (S.Ito & S.Imai) S.Ito ムニンチャモミウラモドキ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/4 (0.0%) | 3/1516 (0.2%) | — |
| EX 絶滅 | Russula boninensis S.Ito & S.Imai オガサワラキハツダケ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 20 | 53 | 17/2548 (0.7%) | 41/4256 (1.0%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Boninastrea boninensis オガサワラサンゴ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |