Genome sequence data availability
for the Japanese Red List
Updated on 2026-05-08
This page shows only entries with the "EX" conservation status. This table is also available in TSV format.
This page shows only entries with the "EX" conservation status. This table is also available in TSV format.
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Pteropus loochoensis オキナワオオコウモリ | DD | ✓ | ✓ | ✓ | ✓ | ✓/— | —/— | No | — | — | — | 0 | 8 | 23 | 5/59 (8.5%) | 14/187 (7.5%) | — |
| EX 絶滅 | Rhinolophus pumilus miyakonis ミヤココキクガシラコウモリ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 21 | 21 | 9/176 (5.1%) | 9/180 (5.0%) | — |
| EX 絶滅 | Pipistrellus sturdeei オガサワラアブラコウモリ | EX | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 15 | 78 | 6/75 (8.0%) | 44/913 (4.8%) | — |
| EX 絶滅 | Canis lupus hattai エゾオオカミ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 44 | 47 | 75 | 3/28 (10.7%) | 13/66 (19.7%) | — |
| EX 絶滅 | Canis lupus hodophilax ニホンオオカミ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/✓ | No | — | — | — | 44 | 47 | 75 | 3/28 (10.7%) | 13/66 (19.7%) | — |
| EX 絶滅 | Lutra lutra nippon ニホンカワウソ（本州以南亜種） | NT | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 76 | 1/4 (25.0%) | 23/73 (31.5%) | — |
| EX 絶滅 | Lutra lutra whiteleyi ニホンカワウソ（北海道亜種） | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 2 | 2 | 76 | 1/4 (25.0%) | 23/73 (31.5%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Tadorna cristata カンムリツクシガモ | CR | ✓ | ✓ | ✓ | ✓ | —/— | —/— | Yes (1) | Scaffold, Reference | 1.38 Gbp 60 | 2,040,001 345 bp | 1 | 10 | 325 | 6/7 (85.7%) | 135/213 (63.4%) | 2025-03-29 |
| EX 絶滅 | Columba jouyi リュウキュウカラスバト | EX | ✓ | ✓ | ✓ | ✓ | ✓/— | ✓/✓ | No | — | — | — | 0 | 30 | 64 | 6/38 (15.8%) | 24/355 (6.8%) | — |
| EX 絶滅 | Columba versicolor オガサワラカラスバト | EX | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 30 | 64 | 6/38 (15.8%) | 24/355 (6.8%) | — |
| EX 絶滅 | Nycticorax caledonicus crassirostris ハシブトゴイ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 3 | 23 | 1/2 (50.0%) | 14/68 (20.6%) | — |
| EX 絶滅 | Porzana cinerea brevipes マミジロクイナ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 31 | 0/1 (0.0%) | 19/145 (13.1%) | — |
| EX 絶滅 | Buteo buteo oshiroi ダイトウノスリ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 5 | 24 | 217 | 16/29 (55.2%) | 151/276 (54.7%) | — |
| EX 絶滅 | Todiramphus miyakoensis ミヤコショウビン | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 4 | 32 | 4/30 (13.3%) | 30/114 (26.3%) | — |
| EX 絶滅 | Dryocopus javensis richardsi キタタキ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 35 | 1/6 (16.7%) | 21/227 (9.3%) | — |
| EX 絶滅 | Falco peregrinus furuitii シマハヤブサ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 12 | 69 | 79 | 28/39 (71.8%) | 38/66 (57.6%) | — |
| EX 絶滅 | Poecile varius orii ダイトウヤマガラ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 31 | 0/5 (0.0%) | 12/83 (14.5%) | — |
| EX 絶滅 | Apalopteron familiare familiare メグロ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 15 | 0/1 (0.0%) | 11/131 (8.4%) | — |
| EX 絶滅 | Troglodytes troglodytes orii ダイトウミソサザイ | — | — | — | — | — | —/— | —/— | No | — | — | — | 2 | 2 | 20 | 1/17 (5.9%) | 12/122 (9.8%) | — |
| EX 絶滅 | Cichlopasser terrestris オガサワラガビチョウ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Luscinia komadori subrufus ウスアカヒゲ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 2 | 77 | 1/6 (16.7%) | 51/303 (16.8%) | — |
| EX 絶滅 | Chaunoproctus ferreorostris オガサワラマシコ | EX | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 149 | 0/1 (0.0%) | 74/297 (24.9%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Acipenser medirostris チョウザメ | EN | ✓ | — | ✓ | ✓ | ✓/10 | ✓/✓ | No | — | — | — | 0 | 15 | 17 | 7/39 (17.9%) | 9/61 (14.8%) | — |
| EX 絶滅 | Gnathopogon elongatus suwae スワモロコ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 25 | 0/13 (0.0%) | 14/358 (3.9%) | — |
| EX 絶滅 | Pungitius kaibarae ミナミトミヨ | LC | ✓ | ✓ | ✓ | ✓ | ✓/10 | ✓/✓ | No | — | — | — | 0 | 6 | 21 | 2/47 (4.3%) | 6/60 (10.0%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Ishikawatrechus intermedius カドタメクラチビゴミムシ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Rakantrechus elegans コゾノメクラチビゴミムシ | — | — | — | ✓ | — | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Prodaticus satoi スジゲンゴロウ | — | ✓ | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 2 | 0/43 (0.0%) | 1/3122 (0.0%) | — |
| EX 絶滅 | Macroplea japana キイロネクイハムシ | — | ✓ | ✓ | ✓ | — | —/1 | —/— | No | — | — | — | 0 | 0 | 146 | 0/6 (0.0%) | 78/7057 (1.1%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Ogasawarana chichijimana チチジマヤマキサゴ | CR | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Ogasawarana habei ソロバンダマヤマキサゴ | CR | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Ogasawarana rex アカビシヤマキサゴ | CR | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Assiminea sp. D リュウキュウカワザンショウ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/25 (0.0%) | 0/80 (0.0%) | — |
| EX 絶滅 | Hirasea diplomphalus latispira ヒラクボエンザガイ | — | — | — | ✓ | — | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea eutheca コシタカエンザガイ | DD | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea goniobasis ソコカドエンザガイ | DD | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea hypolia ツヤエンザガイ | DD | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea major オオエンザガイ | DD | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea nesiotica liobasis ハタイエンザガイ | — | ✓ | — | ✓ | — | ✓/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea planulata biconcava ナカクボエンザガイ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea planulata planulata ヒラマキエンザガイ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea profundispira コダマエンザガイ | DD | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasea sinuosa エンザガイ | DD | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/7 (0.0%) | 0/142 (0.0%) | — |
| EX 絶滅 | Hirasiella clara エンザガイモドキ | DD | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Lamprocystis hahajimana pachychilus アツクチハハジマヒメベッコウ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/2 (0.0%) | 0/14 (0.0%) | — |
| EX 絶滅 | Trochochlamys ogasawarana オガサワラキビ | CR | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/3 (0.0%) | 0/17 (0.0%) | — |
| EX 絶滅 | Vitrinula chichijimana チチジマレンズガイ | EX | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| EX 絶滅 | Vitrinula hahajimana ハハジマレンズガイ | EX | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Compressalges nipponiae トキウモウダニ | — | — | — | ✓ | — | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0 | 0 | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Phlegmariurus cunninghamioides コウヨウザンカズラ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 4 | 0/189 (0.0%) | 3/332 (0.9%) | — |
| EX 絶滅 | Botrychium boreale タカネハナワラビ | — | ✓ | ✓ | ✓ | ✓ | —/3 | —/— | No | — | — | — | 0 | 0 | 0 | 0/66 (0.0%) | 0/143 (0.0%) | — |
| EX 絶滅 | Ophioglossum parvifolium イオウジマハナヤスリ | — | ✓ | ✓ | ✓ | ✓ | —/1 | —/— | No | — | — | — | 0 | 0 | 0 | 0/50 (0.0%) | 0/143 (0.0%) | — |
| EX 絶滅 | Hypolepis tenuifolia オオイワヒメワラビ | — | ✓ | ✓ | ✓ | ✓ | —/1 | —/— | No | — | — | — | 0 | 0 | 0 | 0/45 (0.0%) | 0/174 (0.0%) | — |
| EX 絶滅 | Tectaria dissecta ウスバシダモドキ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/164 (0.0%) | 0/204 (0.0%) | — |
| EX 絶滅 | Pyrrosia angustissima ヒトツバノキシノブ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/76 (0.0%) | 0/1369 (0.0%) | — |
| EX 絶滅 | Aletris scopulorum ヒメソクシンラン | — | ✓ | ✓ | ✓ | ✓ | —/1 | —/— | No | — | — | — | 0 | 0 | 2 | 0/28 (0.0%) | 1/37 (2.7%) | — |
| EX 絶滅 | Burmannia coelestris ミドリシャクジョウ | LC | ✓ | ✓ | ✓ | ✓ | —/2 | —/— | No | — | — | — | 0 | 0 | 0 | 0/36 (0.0%) | 0/71 (0.0%) | — |
| EX 絶滅 | Thismia tuberculata キリシマタヌキノショクダイ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 0 | 0/70 (0.0%) | 0/74 (0.0%) | — |
| EX 絶滅 | Acanthephippium striatum タイワンアオイラン | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 36 | 0/4 (0.0%) | 25/12039 (0.2%) | — |
| EX 絶滅 | Arachnis labrosa ジンヤクラン | — | ✓ | ✓ | ✓ | ✓ | —/1 | —/— | No | — | — | — | 0 | 0 | 36 | 0/6 (0.0%) | 25/12039 (0.2%) | — |
| EX 絶滅 | Neottia kiusiana ツクシサカネラン | — | ✓ | ✓ | ✓ | ✓ | —/1 | —/— | No | — | — | — | 0 | 0 | 36 | 0/42 (0.0%) | 25/12039 (0.2%) | — |
| EX 絶滅 | Odontochilus poilanei ツシマラン | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 36 | 0/8 (0.0%) | 25/12039 (0.2%) | — |
| EX 絶滅 | Eriocaulon setaceum タカノホシクサ | LC | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 1 | 1/182 (0.5%) | 1/539 (0.2%) | — |
| EX 絶滅 | Cyperus diaphanus タチガヤツリ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 9 | 81 | 5/392 (1.3%) | 48/3662 (1.3%) | — |
| EX 絶滅 | Cyperus procerus ホクトガヤツリ | LC | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 9 | 81 | 5/392 (1.3%) | 48/3662 (1.3%) | — |
| EX 絶滅 | Fimbristylis leptoclada var. takamineana チャイロテンツキ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 81 | 0/70 (0.0%) | 48/3662 (1.3%) | — |
| EX 絶滅 | Fimbristylis pauciflora イシガキイトテンツキ | — | ✓ | ✓ | ✓ | ✓ | —/1 | —/— | No | — | — | — | 0 | 0 | 81 | 0/70 (0.0%) | 48/3662 (1.3%) | — |
| EX 絶滅 | Ranunculus gmelinii カラクサキンポウゲ | LC | ✓ | ✓ | ✓ | ✓ | —/3 | —/— | No | — | — | — | 0 | 6 | 30 | 4/444 (0.9%) | 17/1997 (0.9%) | — |
| EX 絶滅 | Flemingia strobilifera ソロハギ | — | ✓ | ✓ | ✓ | ✓ | —/3 | —/— | No | — | — | — | 0 | 1 | 456 | 1/45 (2.2%) | 196/16547 (1.2%) | — |
| EX 絶滅 | Lespedeza hisauchii サガミメドハギ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 456 | 1/66 (1.5%) | 196/16547 (1.2%) | — |
| EX 絶滅 | Rubus hatsushimae ツクシアキツルイチゴ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 16 | 467 | 8/764 (1.0%) | 141/3948 (3.6%) | — |
| EX 絶滅 | Euphrasia insignis subsp. insignis var. omiensis オオミコゴメグサ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 7 | 59 | 4/109 (3.7%) | 50/1451 (3.4%) | — |
| EX 絶滅 | Euphrasia insignis subsp. insignis var. pubigera マツラコゴメグサ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 7 | 59 | 4/109 (3.7%) | 50/1451 (3.4%) | — |
| EX 絶滅 | Euphrasia multifolia var. kirisimana クモイコゴメグサ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 7 | 59 | 4/109 (3.7%) | 50/1451 (3.4%) | — |
| EX 絶滅 | Cirsium toyoshimae トヨシマアザミ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 4 | 227 | 2/250 (0.8%) | 130/17025 (0.8%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Chara fibrosa var. brevibracteata イケダシャジクモ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 1 | 1 | 1/68 (1.5%) | 1/198 (0.5%) | — |
| EX 絶滅 | Chara globularis var. hakonensis ハコネシャジクモ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 1 | 1 | 1/68 (1.5%) | 1/198 (0.5%) | — |
| EX 絶滅 | Nitella minispora キザキフラスコモ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 0 | 1 | 0/67 (0.0%) | 1/198 (0.5%) | — |
| EX 絶滅 | Porphyra angusta コスジノリ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 3 | 8 | 3/139 (2.2%) | 6/364 (1.6%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Mannia androgyna ダンゴゼニゴケ | — | ✓ | ✓ | ✓ | ✓ | —/2 | —/— | No | — | — | — | 0 | 0 | 3 | 0/12 (0.0%) | 2/59 (3.4%) | — |
| EX 絶滅 | Mannia californica ウルシゼニゴケ | — | ✓ | ✓ | ✓ | ✓ | —/2 | —/— | No | — | — | — | 0 | 0 | 3 | 0/12 (0.0%) | 2/59 (3.4%) | — |
| EX 絶滅 | Lepicolea yakusimensis ヤクシマスギバゴケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 1 | 0/7 (0.0%) | 1/8 (12.5%) | — |
| EX 絶滅 | Pterogoniadelphus esquirolii シワナシチビイタチゴケ | — | ✓ | — | ✓ | ✓ | —/1 | —/— | No | — | — | — | 0 | 0 | 1 | 0/2 (0.0%) | 1/26 (3.8%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Heterodermia angustiloba ホソゲジゲジゴケ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 11 | 33 | 7/45 (15.6%) | 24/369 (6.5%) | — |
| EX 絶滅 | Erioderma tomentosum ヌマジリゴケ | — | — | ✓ | ✓ | — | —/— | —/— | No | — | — | — | 0 | 0 | 4 | 0/8 (0.0%) | 4/169 (2.4%) | — |
| EX 絶滅 | Siphula ceratites シロツノゴケ | — | ✓ | ✓ | ✓ | ✓ | —/1 | —/— | No | — | — | — | 0 | 0 | 4 | 0/15 (0.0%) | 3/40 (7.5%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Agaricus hahashimensis ハハジマモリノカサ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 21 | 61 | 5/997 (0.5%) | 34/3127 (1.1%) | — |
| EX 絶滅 | Chlorophyllum agaricoides スナタマゴタケ | — | ✓ | ✓ | ✓ | ✓ | —/2 | —/— | No | — | — | — | 0 | 2 | 61 | 1/33 (3.0%) | 34/3127 (1.1%) | — |
| EX 絶滅 | Coprinus boninensis ムニンヒトヨタケ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 5 | 61 | 1/67 (1.5%) | 34/3127 (1.1%) | — |
| EX 絶滅 | Lepiota boninensis ムニンヒメカラカサタケ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 4 | 61 | 3/426 (0.7%) | 34/3127 (1.1%) | — |
| EX 絶滅 | Clitocybe castaneofloccosa ムニンヒメサカズキタケ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 10 | 1/150 (0.7%) | 5/266 (1.9%) | — |
| EX 絶滅 | Collybia matris ハハノツエタケ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 9 | 10 | 4/68 (5.9%) | 5/266 (1.9%) | — |
| EX 絶滅 | Crepidotus subpurpureus ムラサキチャヒラタケ | — | — | ✓ | ✓ | — | —/— | —/— | No | — | — | — | 0 | 4 | 4 | 4/243 (1.6%) | 4/323 (1.2%) | — |
| EX 絶滅 | Entoloma japonense ムニンチャモミウラモドキ | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 3 | 11 | 1/1309 (0.1%) | 6/1799 (0.3%) | — |
| EX 絶滅 | Camarophyllus microbicolor フタイロコガサタケ | — | — | — | — | — | —/— | —/— | No | — | — | — | 0 | 2 | 17 | 2/259 (0.8%) | 9/1377 (0.7%) | — |
| EX 絶滅 | Hygrocybe macrospora オオミノアカヤマタケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 9 | 17 | 4/338 (1.2%) | 9/1377 (0.7%) | — |
| EX 絶滅 | Hygrocybe miniatostriata ムニンキヤマタケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 9 | 17 | 4/338 (1.2%) | 9/1377 (0.7%) | — |
| EX 絶滅 | Gymnopilus noviholocirrhus オガサワラツムタケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 10 | 12 | 8/165 (4.8%) | 10/838 (1.2%) | — |
| EX 絶滅 | Lycoperdon henningsii コメツブホコリタケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 5 | 2/95 (2.1%) | 4/332 (1.2%) | — |
| EX 絶滅 | Campanella boninensis ムニンチヂミタケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 2 | 0/36 (0.0%) | 2/78 (2.6%) | — |
| EX 絶滅 | Cyathus boninensis ムニンチャダイゴケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 4 | 12 | 3/67 (4.5%) | 11/106 (10.4%) | — |
| EX 絶滅 | Pluteus daidoi ダイドウベニヒダタケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 6 | 1/537 (0.2%) | 3/844 (0.4%) | — |
| EX 絶滅 | Pluteus horridilamellus フサベニヒダタケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 1 | 6 | 1/537 (0.2%) | 3/844 (0.4%) | — |
| EX 絶滅 | Psathyrella boninensis オガサワライタチタケ | — | — | — | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 21 | 2/490 (0.4%) | 15/1244 (1.2%) | — |
| EX 絶滅 | Lentinus lamelliporus ケガワタケ属の１種 | — | — | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 6 | 90 | 4/66 (6.1%) | 54/1949 (2.8%) | — |
| EX 絶滅 | Albatrellus cantharellus アミラッパタケ | — | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 2 | 2 | 2/45 (4.4%) | 2/61 (3.3%) | — |
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Has bacrode sequence in BOLD database: COI/other | Has complete mitochondrial genome in NCBI Organelle / NCBI Nucleotide | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||||
| EX 絶滅 | Boninastrea boninensis オガサワラサンゴ | VU | ✓ | ✓ | ✓ | ✓ | —/— | —/— | No | — | — | — | 0 | 0 | 15 | 0/1 (0.0%) | 8/185 (4.3%) | — |