Genome sequence data availability
for the Japanese Red Lists
Updated on 2024-10-01
This page shows only entries from the "Reptiles" Red List section. This table is also available in TSV format.
This page shows only entries from the "Reptiles" Red List section. This table is also available in TSV format.
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae orientalis マダラトカゲモドキ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae toyamai イヘヤトカゲモドキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| CR 絶滅危惧IA類 | Goniurosaurus kuroiwae yamashinae クメトカゲモドキ | CR | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| CR 絶滅危惧IA類 | Takydromus toyamai ミヤコカナヘビ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/24 (0.0%) | 19/404 (4.7%) | — |
| CR 絶滅危惧IA類 | Opisthotropis kikuzatoi キクザトサワヘビ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/21 (0.0%) | 25/1007 (2.5%) | — |
| EN 絶滅危惧IB類 | Caretta caretta アカウミガメ | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.13 Gbp 109.0x | 2,751 18.2 Mbp | 1 | 1 | 5 | 1/1 (100.0%) | 3/14 (21.4%) | 2022-06-07 |
| EN 絶滅危惧IB類 | Eretmochelys imbricata タイマイ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.30 Gbp 81.0x | 303 82.0 Mbp | 1 | 1 | 5 | 1/1 (100.0%) | 3/14 (21.4%) | 2023-05-15 |
| EN 絶滅危惧IB類 | Goniurosaurus kuroiwae sengokui ケラマトカゲモドキ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| EN 絶滅危惧IB類 | Goniurosaurus splendens オビトカゲモドキ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| EN 絶滅危惧IB類 | Plestiodon takarai センカクトカゲ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| EN 絶滅危惧IB類 | Calamaria pfefferi ミヤコヒメヘビ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 36 | 1/18 (5.6%) | 25/1007 (2.5%) | — |
| EN 絶滅危惧IB類 | Elaphe carinata carinata シュウダ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/20 (0.0%) | 25/1007 (2.5%) | — |
| EN 絶滅危惧IB類 | Elaphe carinata yonaguniensis ヨナグニシュウダ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/20 (0.0%) | 25/1007 (2.5%) | — |
| EN 絶滅危惧IB類 | Hebius concelarus ミヤコヒバァ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/42 (0.0%) | 25/1007 (2.5%) | — |
| VU 絶滅危惧II類 | Chelonia mydas mydas アオウミガメ | — | — | — | ✓ | — | No | — | — | — | 3 | 3 | 5 | 1/1 (100.0%) | 3/14 (21.4%) | — |
| VU 絶滅危惧II類 | Cuora flavomarginata evelynae ヤエヤマセマルハコガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/16 (12.5%) | 4/108 (3.7%) | — |
| VU 絶滅危惧II類 | Geoemyda japonica リュウキュウヤマガメ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/2 (0.0%) | 4/108 (3.7%) | — |
| VU 絶滅危惧II類 | Mauremys mutica kami ヤエヤマイシガメ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 2 | 3 | 5 | 2/20 (10.0%) | 4/108 (3.7%) | — |
| VU 絶滅危惧II類 | Goniurosaurus kuroiwae kuroiwae クロイワトカゲモドキ | — | ✓ | — | — | — | No | — | — | — | 0 | 0 | 1 | 0/27 (0.0%) | 1/47 (2.1%) | — |
| VU 絶滅危惧II類 | Gekko yakuensis ヤクヤモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/91 (2.2%) | 5/1730 (0.3%) | — |
| VU 絶滅危惧II類 | Hemidactylus bowringii タシロヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/226 (0.0%) | 5/1730 (0.3%) | — |
| VU 絶滅危惧II類 | Perochirus ateles ミナミトリシマヤモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 5 | 0/2 (0.0%) | 5/1730 (0.3%) | — |
| VU 絶滅危惧II類 | Diploderma polygonatum donan ヨナグニキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/45 (0.0%) | 9/576 (1.6%) | — |
| VU 絶滅危惧II類 | Diploderma polygonatum polygonatum オキナワキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/45 (0.0%) | 9/576 (1.6%) | — |
| VU 絶滅危惧II類 | Emoia atrocostata atrocostata ミヤコトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/36 (0.0%) | 6/1536 (0.4%) | — |
| VU 絶滅危惧II類 | Plestiodon barbouri バーバートカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| VU 絶滅危惧II類 | Plestiodon kishinouyei キシノウエトカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| VU 絶滅危惧II類 | Plestiodon marginatus オキナワトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| VU 絶滅危惧II類 | Takydromus dorsalis サキシマカナヘビ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/24 (0.0%) | 19/404 (4.7%) | — |
| VU 絶滅危惧II類 | Zootoca vivipara コモチカナヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 1.44 Gbp 34.0x | 731 3.45 Mbp | 3 | 3 | 36 | 1/2 (50.0%) | 19/404 (4.7%) | 2020-04-01 |
| VU 絶滅危惧II類 | Calamaria pavimentata miyarai ミヤラヒメヘビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 36 | 1/18 (5.6%) | 25/1007 (2.5%) | — |
| VU 絶滅危惧II類 | Elaphe taeniura schmackeri サキシマスジオ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/20 (0.0%) | 25/1007 (2.5%) | — |
| VU 絶滅危惧II類 | Achalinus formosanus chigirai ヤエヤマタカチホヘビ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/34 (0.0%) | 0/44 (0.0%) | — |
| VU 絶滅危惧II類 | Emydocephalus ijimae イイジマウミヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.63 Gbp 82.0x | 171,534 18.5 kbp | 1 | 1 | 11 | 1/2 (50.0%) | 9/56 (16.1%) | 2019-01-09 |
| VU 絶滅危惧II類 | Laticauda laticaudata ヒロオウミヘビ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.56 Gbp 133.0x | 89,677 35.6 kbp | 1 | 3 | 12 | 2/7 (28.6%) | 8/280 (2.9%) | 2019-01-09 |
| VU 絶滅危惧II類 | Laticauda semifasciata エラブウミヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 12 | 2/7 (28.6%) | 8/280 (2.9%) | — |
| VU 絶滅危惧II類 | Sinomicrurus macclellandi iwasakii イワサキワモンベニヘビ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/14 (0.0%) | 8/280 (2.9%) | — |
| NT 準絶滅危惧 | Mauremys japonica ニホンイシガメ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 5 | 2/20 (10.0%) | 4/108 (3.7%) | — |
| NT 準絶滅危惧 | Gekko shibatai タカラヤモリ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/91 (2.2%) | 5/1730 (0.3%) | — |
| NT 準絶滅危惧 | Gekko sp. 1 オキナワヤモリ | — | — | — | — | — | No | — | — | — | 0 | 2 | 5 | 2/91 (2.2%) | 5/1730 (0.3%) | — |
| NT 準絶滅危惧 | Gekko tawaensis タワヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 5 | 2/91 (2.2%) | 5/1730 (0.3%) | — |
| NT 準絶滅危惧 | Diploderma polygonatum ishigakiense サキシマキノボリトカゲ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 10 | 0/45 (0.0%) | 9/576 (1.6%) | — |
| NT 準絶滅危惧 | Cryptoblepharus nigropunctatus オガサワラトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 8 | 1/52 (1.9%) | 6/1536 (0.4%) | — |
| NT 準絶滅危惧 | Plestiodon oshimensis オオシマトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| NT 準絶滅危惧 | Plestiodon stimpsonii イシガキトカゲ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| NT 準絶滅危惧 | Takydromus amurensis アムールカナヘビ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/24 (0.0%) | 19/404 (4.7%) | — |
| NT 準絶滅危惧 | Cyclophiops herminae サキシマアオヘビ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/0 | 25/1007 (2.5%) | — |
| NT 準絶滅危惧 | Dinodon rufozonatum rufozonatum アカマダラ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/67 (0.0%) | 25/1007 (2.5%) | — |
| NT 準絶滅危惧 | Lycodon ruhstrati multifasciatus サキシマバイカダ | LC | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/67 (0.0%) | 25/1007 (2.5%) | — |
| NT 準絶滅危惧 | Pareas iwasakii イワサキセダカヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 1 | 1/39 (2.6%) | 1/46 (2.2%) | — |
| NT 準絶滅危惧 | Achalinus werneri アマミタカチホヘビ | NT | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 0 | 0/34 (0.0%) | 0/44 (0.0%) | — |
| NT 準絶滅危惧 | Sinomicrurus japonicus boettgeri ハイ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 12 | 0/14 (0.0%) | 8/280 (2.9%) | — |
| NT 準絶滅危惧 | Sinomicrurus japonicus japonicus ヒャン | — | ✓ | — | ✓ | — | No | — | — | — | 0 | 0 | 12 | 0/14 (0.0%) | 8/280 (2.9%) | — |
| NT 準絶滅危惧 | Protobothrops tokarensis トカラハブ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 27 | 2/16 (12.5%) | 18/402 (4.5%) | — |
| DD 情報不足 | Pelodiscus sinensis ニホンスッポン | VU | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.20 Gbp 105.0x | 205,379 22.0 kbp | 1 | 1 | 5 | 1/19 (5.3%) | 4/51 (7.8%) | 2012-07-24 |
| DD 情報不足 | Plestiodon kuchinoshimensis クチノシマトカゲ | VU | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| DD 情報不足 | Hebius vibakari danjoensis ダンジョヒバカリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/42 (0.0%) | 25/1007 (2.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Lepidodactylus lugubris 大東諸島のオガサワラヤモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 5 | 1/34 (2.9%) | 5/1730 (0.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ateuchosaurus pellopleurus 三島のヘリグロヒメトカゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 8 | 0/2 (0.0%) | 6/1536 (0.4%) | — |
| LP 絶滅のおそれの ある地域個体群 | Plestiodon latiscutatus 三宅島、八丈島、青ヶ島のオカダトカゲ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 8 | 1/50 (2.0%) | 6/1536 (0.4%) | — |
| LP 絶滅のおそれの ある地域個体群 | Takydromus smaragdinus 沖永良部島、徳之島のアオカナヘビ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/24 (0.0%) | 19/404 (4.7%) | — |
| LP 絶滅のおそれの ある地域個体群 | Dinodon rufozonatum walli 宮古諸島のサキシママダラ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 36 | 0/67 (0.0%) | 25/1007 (2.5%) | — |