Genome sequence data availability
for the Japanese Red Lists
Updated on 2024-10-01
This page shows only entries from the "Mammals" Red List section. This table is also available in TSV format.
This page shows only entries from the "Mammals" Red List section. This table is also available in TSV format.
| Conservation Status in the Japanese Red List | Taxon Name 分類群の和名 | Status in the IUCN Red List | Taxonomy entry | Genome sequenced and assembled? (number of assemblies) | Selected assembly | Number of sequenced genomes ゲノムの数 | Number of species with sequenced genomes | Earliest sequenced genome release date | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCBI | iNat | GBIF | COL | Assembly level, RefSeq category | Genome length, coverage | Number of contigs, contig N50 | Species 種 | Genus 属 | Family 科 | Genus 属 | Family 科 | |||||
| EX 絶滅 | Pteropus loochoensis オキナワオオコウモリ | DD | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | — |
| EX 絶滅 | Rhinolophus pumilus miyakonis ミヤココキクガシラコウモリ | — | — | — | — | — | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| EX 絶滅 | Pipistrellus sturdeei オガサワラアブラコウモリ | EX | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 48 | 4/77 (5.2%) | 29/892 (3.3%) | — |
| EX 絶滅 | Canis lupus hattai エゾオオカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 30 | 31 | 52 | 2/29 (6.9%) | 12/65 (18.5%) | — |
| EX 絶滅 | Canis lupus hodophilax ニホンオオカミ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 30 | 31 | 52 | 2/29 (6.9%) | 12/65 (18.5%) | — |
| EX 絶滅 | Lutra lutra nippon ニホンカワウソ（本州以南亜種） | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 64 | 1/4 (25.0%) | 20/70 (28.6%) | — |
| EX 絶滅 | Lutra lutra whiteleyi ニホンカワウソ（北海道亜種） | — | — | — | ✓ | ✓ | No | — | — | — | 2 | 2 | 64 | 1/4 (25.0%) | 20/70 (28.6%) | — |
| CR 絶滅危惧IA類 | Mogera uchidai センカクモグラ | VU | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/10 (0.0%) | 6/106 (5.7%) | — |
| CR 絶滅危惧IA類 | Pteropus dasymallus daitoensis ダイトウオオコウモリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | — |
| CR 絶滅危惧IA類 | Pteropus dasymallus dasymallus エラブオオコウモリ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | — |
| CR 絶滅危惧IA類 | Myotis formosus クロアカコウモリ | NT | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| CR 絶滅危惧IA類 | Myotis yanbarensis ヤンバルホオヒゲコウモリ | CR | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| CR 絶滅危惧IA類 | Apodemus agrarius セスジネズミ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 2.61 Gbp 70.0x | 242 35.2 Mbp | 1 | 5 | 138 | 3/36 (8.3%) | 37/1165 (3.2%) | 2024-04-12 |
| CR 絶滅危惧IA類 | Tokudaia muenninki オキナワトゲネズミ | CR | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 2.66 Gbp 100.0x | 1,777 19.7 Mbp | 2 | 5 | 138 | 3/3 (100.0%) | 37/1165 (3.2%) | 2023-09-08 |
| CR 絶滅危惧IA類 | Prionailurus bengalensis euptilurus ツシマヤマネコ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 2.42 Gbp 100.0x | 319,281 20.4 kbp | 3 | 7 | 57 | 3/5 (60.0%) | 22/54 (40.7%) | 2020-09-15 |
| CR 絶滅危惧IA類 | Prionailurus bengalensis iriomotensis イリオモテヤマネコ | CR | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.38 Gbp 87.0x | 194,533 27.8 kbp | 1 | 7 | 57 | 3/5 (60.0%) | 22/54 (40.7%) | 2021-03-31 |
| CR 絶滅危惧IA類 | Enhydra lutris ラッコ | EN | ✓ | ✓ | ✓ | ✓ | Yes (2) | Scaffold, Reference | 2.46 Gbp 110.0x | 29,591 245 kbp | 2 | 2 | 64 | 1/1 (100.0%) | 20/70 (28.6%) | 2017-09-11 |
| CR 絶滅危惧IA類 | Zalophus japonicus ニホンアシカ | EX | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 13 | 1/3 (33.3%) | 5/16 (31.2%) | — |
| CR 絶滅危惧IA類 | Dugong dugon ジュゴン | VU | ✓ | ✓ | ✓ | ✓ | Yes (5) | Chromosome, Reference | 3.16 Gbp 32.0x | 294 57.6 Mbp | 5 | 5 | 6 | 1/1 (100.0%) | 2/2 (100.0%) | 2020-08-31 |
| EN 絶滅危惧IB類 | Crocidura orii オリイジネズミ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/306 (0.3%) | 8/532 (1.5%) | — |
| EN 絶滅危惧IB類 | Mogera etigo エチゴモグラ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/10 (0.0%) | 6/106 (5.7%) | — |
| EN 絶滅危惧IB類 | Pteropus pselaphon オガサワラオオコウモリ | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 1.93 Gbp 119.0x | 16,738 395 kbp | 1 | 5 | 17 | 5/60 (8.3%) | 14/184 (7.6%) | 2020-08-23 |
| EN 絶滅危惧IB類 | Rhinolophus cornutus orii オリイコキクガシラコウモリ | — | — | — | ✓ | ✓ | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| EN 絶滅危惧IB類 | Rhinolophus pumilus pumilus オキナワコキクガシラコウモリ | — | — | — | — | — | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| EN 絶滅危惧IB類 | Murina ryukyuana リュウキュウテングコウモリ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 48 | 1/69 (1.4%) | 29/892 (3.3%) | — |
| EN 絶滅危惧IB類 | Nyctalus furvus コヤマコウモリ | EN | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 48 | 2/8 (25.0%) | 29/892 (3.3%) | — |
| EN 絶滅危惧IB類 | Miniopterus fuscus リュウキュウユビナガコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 4 | 4 | 2/73 (2.7%) | 2/73 (2.7%) | — |
| EN 絶滅危惧IB類 | Diplothrix legata ケナガネズミ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 138 | 0/1 (0.0%) | 37/1165 (3.2%) | — |
| EN 絶滅危惧IB類 | Tokudaia osimensis アマミトゲネズミ | EN | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.44 Gbp 170.0x | 111,287 52.4 kbp | 1 | 5 | 138 | 3/3 (100.0%) | 37/1165 (3.2%) | 2022-11-01 |
| EN 絶滅危惧IB類 | Tokudaia tokunoshimensis トクノシマトゲネズミ | EN | ✓ | ✓ | ✓ | — | Yes (2) | Scaffold, Reference | 2.48 Gbp 135.0x | 569 13.6 Mbp | 2 | 5 | 138 | 3/3 (100.0%) | 37/1165 (3.2%) | 2023-09-08 |
| EN 絶滅危惧IB類 | Pentalagus furnessi アマミノクロウサギ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 19 | 0/1 (0.0%) | 9/135 (6.7%) | — |
| EN 絶滅危惧IB類 | Mustela sibirica シベリアイタチ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 35 | 64 | 6/20 (30.0%) | 20/70 (28.6%) | — |
| VU 絶滅危惧II類 | Sorex minutissimus hawkeri トウキョウトガリネズミ | — | — | — | — | — | No | — | — | — | 0 | 9 | 13 | 5/70 (7.1%) | 8/532 (1.5%) | — |
| VU 絶滅危惧II類 | Rhinolophus perditus ヤエヤマコキクガシラコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 11 | 5/167 (3.0%) | 5/171 (2.9%) | — |
| VU 絶滅危惧II類 | Eptesicus japonensis クビワコウモリ | VU | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 5 | 48 | 2/43 (4.7%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Myotis gracilis ウスリホオヒゲコウモリ | — | ✓ | — | — | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Myotis nattereri bombinus ホンドノレンコウモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Myotis pruinosus クロホオヒゲコウモリ | EN | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Nyctalus aviator ヤマコウモリ | NT | ✓ | ✓ | ✓ | ✓ | Yes (1) | Chromosome, Reference | 1.78 Gbp 380.0x | 337 61.2 Mbp | 1 | 3 | 48 | 2/8 (25.0%) | 29/892 (3.3%) | 2024-05-31 |
| VU 絶滅危惧II類 | Pipistrellus endoi モリアブラコウモリ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 48 | 4/77 (5.2%) | 29/892 (3.3%) | — |
| VU 絶滅危惧II類 | Tadarida insignis オヒキコウモリ | DD | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 10 | 1/8 (12.5%) | 4/145 (2.8%) | — |
| NT 準絶滅危惧 | Crocidura shantungensis コジネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/306 (0.3%) | 8/532 (1.5%) | — |
| NT 準絶滅危惧 | Crocidura watasei ワタセジネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 13 | 1/306 (0.3%) | 8/532 (1.5%) | — |
| NT 準絶滅危惧 | Sorex hosonoi アズミトガリネズミ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 13 | 5/70 (7.1%) | 8/532 (1.5%) | — |
| NT 準絶滅危惧 | Sorex shinto shikokensis シコクトガリネズミ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 9 | 13 | 5/70 (7.1%) | 8/532 (1.5%) | — |
| NT 準絶滅危惧 | Euroscaptor mizura ミズラモグラ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/1 (0.0%) | 6/106 (5.7%) | — |
| NT 準絶滅危惧 | Mogera tokudae サドモグラ | NT | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 7 | 0/10 (0.0%) | 6/106 (5.7%) | — |
| NT 準絶滅危惧 | Myodes rex montanus ミヤマムクゲネズミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 76 | 0/2 (0.0%) | 38/1112 (3.4%) | — |
| NT 準絶滅危惧 | Myodes rex rex リシリムクゲネズミ | — | — | — | — | — | No | — | — | — | 0 | 0 | 76 | 0/2 (0.0%) | 38/1112 (3.4%) | — |
| NT 準絶滅危惧 | Ochotona hyperborea yesoensis エゾナキウサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 6 | 6 | 2/65 (3.1%) | 2/66 (3.0%) | — |
| NT 準絶滅危惧 | Lepus brachyurus lyoni サドノウサギ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 11 | 19 | 6/95 (6.3%) | 9/135 (6.7%) | — |
| NT 準絶滅危惧 | Martes melampus tsuensis ツシマテン | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 8 | 64 | 4/9 (44.4%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Martes zibellina brachyura エゾクロテン | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 8 | 64 | 4/9 (44.4%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Mustela erminea nippon ホンドオコジョ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 35 | 64 | 6/20 (30.0%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Mustela erminea orientalis エゾオコジョ | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 35 | 64 | 6/20 (30.0%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Mustela nivalis namiyei ニホンイイズナ（本州亜種） | — | — | ✓ | ✓ | ✓ | No | — | — | — | 2 | 35 | 64 | 6/20 (30.0%) | 20/70 (28.6%) | — |
| NT 準絶滅危惧 | Phoca vitulina ゼニガタアザラシ | LC | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, Reference | 2.36 Gbp 45.0x | 21,601 284 kbp | 1 | 1 | 11 | 1/4 (25.0%) | 8/19 (42.1%) | 2019-02-11 |
| NT 準絶滅危惧 | Eumetopias jubatus トド | NT | ✓ | ✓ | ✓ | ✓ | Yes (3) | Scaffold, Reference | 2.42 Gbp 34.7x | 24,746 242 kbp | 3 | 3 | 13 | 1/1 (100.0%) | 5/16 (31.2%) | 2019-01-15 |
| DD 情報不足 | Hypsugo alaschanicus オオアブラコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 48 | 0/25 (0.0%) | 29/892 (3.3%) | — |
| DD 情報不足 | Murina tenebrosa クチバテングコウモリ | CR | — | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 48 | 1/69 (1.4%) | 29/892 (3.3%) | — |
| DD 情報不足 | Vespertilio murinus ヒメヒナコウモリ | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Chromosome, Reference | 1.93 Gbp 44.0x | 1,157 3.32 Mbp | 2 | 2 | 48 | 1/2 (50.0%) | 29/892 (3.3%) | 2024-01-29 |
| DD 情報不足 | Tadarida latouchei スミイロオヒキコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 3 | 10 | 1/8 (12.5%) | 4/145 (2.8%) | — |
| DD 情報不足 | Tamias sibiricus lineatus エゾシマリス | — | — | ✓ | ✓ | ✓ | No | — | — | — | 1 | 1 | 31 | 1/26 (3.8%) | 17/310 (5.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Chimarrogale platycephala 九州地方のカワネズミ | LC | ✓ | ✓ | — | ✓ | No | — | — | — | 0 | 0 | 13 | 0/6 (0.0%) | 8/532 (1.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Hipposideros turpis 波照間島のカグラコウモリ | EN | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 5 | 6 | 4/126 (3.2%) | 5/144 (3.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Barbastella leucomelas 四国のチチブコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 0 | 48 | 0/7 (0.0%) | 29/892 (3.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Myotis ikonnikovi hosonoi 紀伊半島のシナノホオヒゲコウモリ | — | — | — | — | — | No | — | — | — | 0 | 17 | 48 | 12/375 (3.2%) | 29/892 (3.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Plecotus sacrimontis 近畿地方以西のウサギコウモリ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 2 | 48 | 1/29 (3.4%) | 29/892 (3.3%) | — |
| LP 絶滅のおそれの ある地域個体群 | Macaca fuscata fuscata 北奥羽・北上山系のホンドザル | LC | ✓ | ✓ | ✓ | ✓ | Yes (2) | Contig, Reference | 2.93 Gbp 42.0x | 90,905 94.9 kbp | 2 | 47 | 146 | 15/33 (45.5%) | 84/196 (42.9%) | 2018-04-04 |
| LP 絶滅のおそれの ある地域個体群 | Sciurus lis 九州地方のニホンリス | LC | ✓ | ✓ | ✓ | — | No | — | — | — | 0 | 7 | 31 | 3/14 (21.4%) | 17/310 (5.5%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ursus arctos yesoensis 石狩西部のエゾヒグマ | — | — | — | — | — | No | — | — | — | 3 | 11 | 17 | 4/13 (30.8%) | 7/20 (35.0%) | — |
| LP 絶滅のおそれの ある地域個体群 | Ursus thibetanus japonicus 西中国地域のツキノワグマ | — | ✓ | ✓ | ✓ | ✓ | Yes (1) | Scaffold, — | 2.21 Gbp 87.0x | 127,776 39.8 kbp | 2 | 11 | 17 | 4/13 (30.8%) | 7/20 (35.0%) | 2020-08-23 |
| LP 絶滅のおそれの ある地域個体群 | Cervus nippon 馬毛島のニホンジカ | LC | ✓ | ✓ | ✓ | ✓ | Yes (3) | Chromosome, Reference | 2.78 Gbp 37.0x | 51 89.6 Mbp | 3 | 9 | 55 | 5/7 (71.4%) | 23/171 (13.5%) | 2023-12-07 |
| LP 絶滅のおそれの ある地域個体群 | Sus scrofa riukiuanus 徳之島のリュウキュウイノシシ | — | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 39 | 40 | 43 | 2/16 (12.5%) | 4/27 (14.8%) | — |
| LP 絶滅のおそれの ある地域個体群 | Capricornis crispus 九州地方のカモシカ | LC | ✓ | ✓ | ✓ | ✓ | No | — | — | — | 0 | 1 | 250 | 1/12 (8.3%) | 73/234 (31.2%) | — |